Name: Desulfocastanea catecholica NZva20
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3966

Type strain:

Species: Desulfocastanea catecholica

Strain Designation: NZva20

Culture col. no.: DSM 3882, JCM 39068

Strain history: DSM 3882 <-- R. Szewzyk; Univ. of Konstanz, Germany; NZva20.

NCBI tax ID(s): 90729 (species)

SI-ID 47771

DSM 3882, ATCC 43955

Section

Desulfocastanea catecholica NZva20 is an anaerobe, mesophilic bacterium that was isolated from anoxic mud.

anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfobacterales*
	Family	*Desulfobulbaceae*
	Genus	*Desulfocastanea*
	Species	**Desulfocastanea catecholica**
	Full Scientific Name (LPSN)	Desulfocastanea catecholica (Szewzyk and Pfennig 1988) Galushko and Kuever 2021

Synonym

Desulfobacterium catecholicum

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1500]

Culture medium

DESULFOBACTERIUM CATECHOLICUM MEDIUM (DSMZ Medium 385)

[Ref.: #1500]

Culture medium growth

[Ref.: #1500]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1500]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1500]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #1500]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1500]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1500]	Sample type/isolated from	anoxic mud
[Ref.: #1500]	Geographic location (country and/or sea, region)	Delaware Bay
[Ref.: #1500]	Country	New Zealand
[Ref.: #1500]	Country ISO 3 Code	NZL
[Ref.: #1500]	Continent	Australia and Oceania

[Ref.: #67770]	Sample type/isolated from	Delaware Bay
[Ref.: #67770]	Geographic location (country and/or sea, region)	north-east of Nelson
[Ref.: #67770]	Country	New Zealand
[Ref.: #67770]	Country ISO 3 Code	NZL
[Ref.: #67770]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Mud (Sludge)
#Condition	#Anoxic (anaerobic)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ237602 (>99% sequence identity) for [Desulfobacterium] catecholicum subclade from Microbeatlas

Aquatic Samples	46
Soil Samples	4
Animal Samples	1
Plant Samples
Total Samples	51

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1500]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1500]	Desulfobacterium catecholicum 16S rRNA gene, partial, strain DSM 3882	AJ237602	1501	ENA	90729 tax ID

[Ref.: #1500]	GC-content	52.4 mol%
[Ref.: #67770]	GC-content	52.4 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #1500]

Culture collection no.

DSM 3882, JCM 39068

[Ref.: #73474]

SI-ID 47771

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulfoprunum benzoelyticum gen. nov., sp. nov., a Gram-stain-negative, benzoate-degrading, sulfate-reducing bacterium isolated from a wastewater treatment plant.	Junghare M, Schink B	Int J Syst Evol Microbiol	10.1099/ijs.0.066761-0	2014	*
Phylogeny	Desulfopila aestuarii gen. nov., sp. nov., a Gram-negative, rod-like, sulfate-reducing bacterium isolated from an estuarine sediment in Japan.	Suzuki D, Ueki A, Amaishi A, Ueki K	Int J Syst Evol Microbiol	10.1099/ijs.0.64600-0	2007	*

References

#1500

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3882

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#73474

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID47771.1 )

* These data were automatically processed and therefore are not curated

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