Name: Desulfatibacillum alkenivorans PF2803
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3947

Type strain:

Species: Desulfatibacillum alkenivorans

Strain Designation: PF2803

Culture col. no.: DSM 16219, ATCC BAA-924

Strain history: <- C. Cravo-Laureau, IMEP CNRS UMR 6116, Faculté des Sciences et Techniques de Saint-Jérôme, Marseille, France; PF2803 <- C. Cravo-Laureau {2000}

NCBI tax ID(s): 1121393 (strain), 259354 (species)

SI-ID 134284

ATCC BAA-924, DSM 16219

Section

Desulfatibacillum alkenivorans PF2803 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from oil polluted sediment of operation station of ballast water and tank water cleanning.

Gram-negative
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfobacterales*
	Family	*Desulfobacteraceae*
	Genus	*Desulfatibacillum*
	Species	**Desulfatibacillum alkenivorans**
	Full Scientific Name (LPSN)	Desulfatibacillum alkenivorans Cravo-Laureau et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #31235]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #31235]	Cell length	1.2-4.5 µm

[Ref.: #31235]	Cell width	0.68 µm

[Ref.: #31235]	Cell shape	rod-shaped

[Ref.: #31235]	Motility	no
[Ref.: #69480]	Motility	yes Confidence in %91.278

[Ref.: #6334]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6334]

Culture medium

DESULFOBACTERIUM MEDIUM (DSMZ Medium 383)

[Ref.: #6334]

Culture medium growth

[Ref.: #6334]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6334]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6334]	growth	30 °C
[Ref.: #31235]	growth	22-38 °C
[Ref.: #31235]	optimum	29 °C

[Ref.: #6334]	Temperature range	mesophilic
[Ref.: #31235]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31235]			optimum	6.8
[Ref.: #31235]			growth	6.2-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6334]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.033

[Ref.: #31235]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.474

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31235]	butanol ChEBI	+	carbon source
[Ref.: #31235]	glycerol ChEBI	+	carbon source
[Ref.: #31235]	malate ChEBI	+	carbon source
[Ref.: #31235]	pyruvate ChEBI	+	carbon source
[Ref.: #31235]	valerate ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6334]	Sample type/isolated from	oil polluted sediment of operation station of ballast water and tank water cleanning
[Ref.: #6334]	Geographic location (country and/or sea, region)	Fos Harbor
[Ref.: #6334]	Country	France
[Ref.: #6334]	Country ISO 3 Code	FRA
[Ref.: #6334]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	#Oil (Fuel)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY493562 (>99% sequence identity) for Desulfatibacillum from Microbeatlas

Aquatic Samples	692
Soil Samples	81
Animal Samples	30
Plant Samples	17
Total Samples	820

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6334]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6334]	Desulfatibacillum alkenivorans 16S ribosomal RNA gene, partial sequence	AY493562	1524	ENA	259354 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfatibacillum alkenivorans DSM 16219	GCA_900142135	scaffold	GenBank	1121393 tax ID	*
[Ref.: #66792]	Desulfatibacillum alkenivorans DSM 16219	1121393.3	wgs	PATRIC	1121393 tax ID	*
[Ref.: #66792]	Desulfatibacillum alkenivorans DSM 16219	2585428156	draft	JGI IMG/M	1121393 tax ID	*

[Ref.: #6334]	GC-content	57.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31235]	GC-content	57.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfatibacillum alkenivorans DSM 16219 DSM 16219 NCBI: GCA_900142135.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfatibacillum alkenivorans DSM 16219 DSM 16219 NCBI: GCA_900142135.1
[Ref.: #69480]	motile	yes	70.029	no
[Ref.: #69480]	flagellated	no	84.136	no
[Ref.: #69480]	gram-positive	no	98.969	yes
[Ref.: #69480]	anaerobic	yes	98.968	no
[Ref.: #69480]	aerobic	no	97.296	no
[Ref.: #69480]	halophile	no	65.891	no
[Ref.: #69480]	spore-forming	no	90.44	yes
[Ref.: #69480]	thermophile	no	95.539	no
[Ref.: #69480]	glucose-util	no	51.094	no
[Ref.: #69480]	glucose-ferment	no	85.629	no

Availability in culture collections External links

[Ref.: #6334]

Culture collection no.

DSM 16219, ATCC BAA-924

[Ref.: #73456]

SI-ID 134284

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Mono- and dialkyl glycerol ether lipids in anaerobic bacteria: biosynthetic insights from the mesophilic sulfate reducer Desulfatibacillum alkenivorans PF2803T.	Grossi V, Mollex D, Vincon-Laugier A, Hakil F, Pacton M, Cravo-Laureau C	Appl Environ Microbiol	10.1128/AEM.03794-14	2015	*
Phylogeny	Desulfatibacillum alkenivorans sp. nov., a novel n-alkene-degrading, sulfate-reducing bacterium, and emended description of the genus Desulfatibacillum.	Cravo-Laureau C, Matheron R, Joulian C, Cayol JL, Hirschler-Rea A	Int J Syst Evol Microbiol	10.1099/ijs.0.63104-0	2004	*

References

#6334

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16219

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31235

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27559 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73456

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID134284.1 )

#27559

IJSEM 1693 2004 ( DOI 10.1099/ijs.0.63104-0 , PubMed 15388722 )

* These data were automatically processed and therefore are not curated

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Desulfatibacillum alkenivorans DSM 16219 DSM 16219

Desulfatibacillum alkenivorans DSM 16219 DSM 16219

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