Name: Alcanivorax dieselolei B-5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 394

Type strain:

Species: Alcanivorax dieselolei

Strain Designation: B-5

Culture col. no.: DSM 16502, CGMCC 1.3690

Strain history: <- Z. Shao, State Oceanic Admin., Third Inst. Oceanography, China; B-5 <- C. Liu

NCBI tax ID(s): 285091 (species)

SI-ID 138966

CGMCC 1.3690, DSM 16502

Other strains from Alcanivorax dieselolei

A. dieselolei CCUG 58480
A. dieselolei CCUG 61641

Section

Alcanivorax dieselolei B-5 is an aerobe, halophilic, mesophilic bacterium that forms irregular colonies and was isolated from oil-contaminated sea water at the Yellow River dock of Shengli oilfield.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
halophilic
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Alcanivoracaceae*
	Genus	*Alcanivorax*
	Species	**Alcanivorax dieselolei**
	Full Scientific Name (LPSN)	Alcanivorax dieselolei Liu and Shao 2005

Synonym

Alloalcanivorax dieselolei

Information on morphological and physiological properties Morphology

[Ref.: #23284]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #23284]	Cell length	0.8-2.0 µm

[Ref.: #23284]	Cell width	0.3-0.7 µm

[Ref.: #23284]	Cell shape	rod-shaped

[Ref.: #23284]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %92.822

[Ref.: #23284]	Flagellum arrangement	lophotrichous

[Ref.: #23284]	Colony color	translucent
[Ref.: #23284]	Colony shape	irregular
[Ref.: #23284]	Cultivation medium used	HLB agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6379]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6379]

Culture medium growth

[Ref.: #6379]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6379]

Culture medium composition

expand / minimize

[Ref.: #23284]

Culture medium

HLB agar

[Ref.: #23284]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #6379]		growth	28 °C
[Ref.: #23284]		growth	15-45 °C
[Ref.: #23284]	no	growth	4 °C
[Ref.: #23284]		growth	45 °C
[Ref.: #23284]		optimum	28 °C

[Ref.: #6379]	Temperature range	mesophilic
[Ref.: #23284]	Temperature range	psychrophilic
[Ref.: #23284]	Temperature range	thermophilic
[Ref.: #23284]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23284]

Oxygen tolerance

aerobe

[Ref.: #23284]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.995

[Ref.: #23284]

Halophily / tolerance level

halophilic

	Salt	Tested relation		Salt conc.
[Ref.: #23284]	NaCl		growth	1-15	%
[Ref.: #23284]	NaCl		optimum	3-7.5	%
[Ref.: #23284]	NaCl	no	growth	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23284]	2,3-butanediol ChEBI	+	assimilation
[Ref.: #23284]	4-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #23284]	4-hydroxyphenylacetic acid ChEBI	+	assimilation
[Ref.: #23284]	4-hydroxyphenylacetic acid ChEBI	+	carbon source
[Ref.: #23284]	acetate ChEBI	+	assimilation
[Ref.: #23284]	alpha-lactose ChEBI	-	assimilation
[Ref.: #23284]	beta-hydroxybutyrate ChEBI	+	assimilation
[Ref.: #23284]	cellobiose ChEBI	-	assimilation
[Ref.: #23284]	citrate ChEBI	+	assimilation
[Ref.: #23284]	citrate ChEBI	+	carbon source
[Ref.: #23284]	D-arabitol ChEBI	-	assimilation
[Ref.: #23284]	D-fructose ChEBI	-	assimilation
[Ref.: #23284]	D-galactose ChEBI	-	assimilation
[Ref.: #23284]	D-glucose ChEBI	-	assimilation
[Ref.: #23284]	D-mannitol ChEBI	-	assimilation
[Ref.: #23284]	D-mannose ChEBI	-	assimilation
[Ref.: #23284]	D-sorbitol ChEBI	-	assimilation
[Ref.: #23284]	D-trehalose ChEBI	-	assimilation
[Ref.: #23284]	decane ChEBI	+	degradation
[Ref.: #23284]	docosane ChEBI	+	degradation
[Ref.: #23284]	dodecane ChEBI	+	degradation
[Ref.: #23284]	dotriacontane ChEBI	+	degradation
[Ref.: #23284]	erythritol ChEBI	-	assimilation
[Ref.: #23284]	gentiobiose ChEBI	-	assimilation
[Ref.: #23284]	henicosane ChEBI	+	degradation
[Ref.: #23284]	hentriacontane ChEBI	+	degradation
[Ref.: #23284]	heptacosane ChEBI	+	degradation
[Ref.: #23284]	heptadecane ChEBI	+	degradation
[Ref.: #23284]	heptane ChEBI	+	degradation
[Ref.: #23284]	hexacosane ChEBI	+	degradation
[Ref.: #23284]	hexadecane ChEBI	+	degradation
[Ref.: #23284]	hexane ChEBI	+	degradation
[Ref.: #23284]	hexatriacontane ChEBI	+	degradation
[Ref.: #23284]	icosane ChEBI	+	degradation
[Ref.: #23284]	L-arabinose ChEBI	-	assimilation
[Ref.: #23284]	L-fucose ChEBI	-	assimilation
[Ref.: #23284]	L-rhamnose ChEBI	-	assimilation
[Ref.: #23284]	lactate ChEBI	+	assimilation
[Ref.: #23284]	lactate ChEBI	+	carbon source
[Ref.: #23284]	lactulose ChEBI	-	assimilation
[Ref.: #23284]	maltose ChEBI	-	assimilation
[Ref.: #23284]	melibiose ChEBI	-	assimilation
[Ref.: #23284]	methyl beta-D-glucopyranoside ChEBI	-	assimilation
[Ref.: #23284]	methyl pyruvate ChEBI	+	assimilation
[Ref.: #23284]	monomethyl succinate ChEBI	+	assimilation
[Ref.: #23284]	myo-inositol ChEBI	-	assimilation
[Ref.: #23284]	N-acetylgalactosamine ChEBI	-	assimilation
[Ref.: #23284]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #23284]	nitrate ChEBI	+	reduction
[Ref.: #23284]	nonacosane ChEBI	+	degradation
[Ref.: #23284]	nonadecane ChEBI	+	degradation
[Ref.: #23284]	nonane ChEBI	+	degradation
[Ref.: #23284]	octacosane ChEBI	+	degradation
[Ref.: #23284]	octadecane ChEBI	+	degradation
[Ref.: #23284]	octane ChEBI	+	degradation
[Ref.: #23284]	pentacosane ChEBI	+	degradation
[Ref.: #23284]	pentadecane ChEBI	+	degradation
[Ref.: #23284]	pentane ChEBI	+	degradation
[Ref.: #23284]	pentatriacontane	+	degradation
[Ref.: #23284]	propionate ChEBI	+	assimilation
[Ref.: #23284]	psicose ChEBI	-	assimilation
[Ref.: #23284]	pyruvate ChEBI	+	carbon source
[Ref.: #23284]	raffinose ChEBI	-	assimilation
[Ref.: #23284]	ribitol ChEBI	-	assimilation
[Ref.: #23284]	succinate ChEBI	+	assimilation
[Ref.: #23284]	sucrose ChEBI	-	assimilation
[Ref.: #23284]	tetracosane ChEBI	+	degradation
[Ref.: #23284]	tetradecane ChEBI	+	degradation
[Ref.: #23284]	tetratriacontane ChEBI	+	degradation
[Ref.: #23284]	triacontane ChEBI	+	degradation
[Ref.: #23284]	tricosane ChEBI	+	degradation
[Ref.: #23284]	tridecane ChEBI	+	degradation
[Ref.: #23284]	tritriacontane ChEBI	+	degradation
[Ref.: #23284]	turanose ChEBI	-	assimilation
[Ref.: #23284]	tween 40 ChEBI	+	assimilation
[Ref.: #23284]	tween 80 ChEBI	+	assimilation
[Ref.: #23284]	tween 80 ChEBI	+	degradation
[Ref.: #23284]	undecane ChEBI	+	degradation
[Ref.: #23284]	xylitol ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity
[Ref.: #23284]	amikacin ChEBI	yes
[Ref.: #23284]	kanamycin ChEBI	yes
[Ref.: #23284]	neomycin ChEBI	yes
[Ref.: #23284]	polymyxin b ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #23284]	agarase	-	3.2.1.81
[Ref.: #23284]	amylase	-
[Ref.: #23284]	arginine dihydrolase	-	3.5.3.6
[Ref.: #23284]	catalase	+	1.11.1.6
[Ref.: #23284]	cytochrome oxidase	+	1.9.3.1
[Ref.: #23284]	gelatinase	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6379]	Sample type/isolated from	oil-contaminated sea water at the Yellow River dock of Shengli oilfield
[Ref.: #6379]	Geographic location (country and/or sea, region)	Bohai Sea
[Ref.: #6379]	Country	China
[Ref.: #6379]	Country ISO 3 Code	CHN
[Ref.: #6379]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	#Oil (Fuel)
#Environmental	#Aquatic	#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY683537 (>99% sequence identity) for Alcanivorax from Microbeatlas

Aquatic Samples	8225
Soil Samples	778
Animal Samples	1456
Plant Samples	237
Total Samples	10696

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6379]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6379]	Alcanivorax dieselolei strain B-5 clone 1 16S ribosomal RNA gene, partial sequence	AY683537	1504	ENA	285091 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Alloalcanivorax dieselolei CGMCC 1.3690	GCA_014644575	contig	GenBank	285091 tax ID	*
[Ref.: #66792]	Alcanivorax dieselolei strain CGMCC 1.3690	285091.9	wgs	PATRIC	285091 tax ID	*

[Ref.: #6379]	GC-content	62.1 mol%
[Ref.: #23284]	GC-content	62.1 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alcanivorax dieselolei strain CGMCC 1.3690 PATRIC: 285091.5
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alcanivorax dieselolei strain CGMCC 1.3690 PATRIC: 285091.9
[Ref.: #69480]	motile	yes	92.806	yes
[Ref.: #69480]	gram-positive	no	98.675	no
[Ref.: #69480]	anaerobic	no	98.461	yes
[Ref.: #69480]	halophile	yes	82.777	no
[Ref.: #69480]	spore-forming	no	96.344	yes
[Ref.: #69480]	glucose-util	no	76.211	yes
[Ref.: #69480]	flagellated	yes	87.332	yes
[Ref.: #69480]	aerobic	yes	95.529	yes
[Ref.: #69480]	thermophile	no	99.377	no
[Ref.: #69480]	glucose-ferment	no	88.379	no

Availability in culture collections External links

[Ref.: #6379]

Culture collection no.

DSM 16502, CGMCC 1.3690

[Ref.: #70074]

SI-ID 138966

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alcanivorax xenomutans sp. nov., a hydrocarbonoclastic bacterium isolated from a shrimp cultivation pond.	Rahul K, Sasikala C, Tushar L, Debadrita R, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijs.0.061168-0	2014	*
Phylogeny	Alcanivorax dieselolei sp. nov., a novel alkane-degrading bacterium isolated from sea water and deep-sea sediment.	Liu C, Shao Z	Int J Syst Evol Microbiol	10.1099/ijs.0.63443-0	2005	*

References

#6379

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16502

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23284

Chenli Liu, Zongze Shao: Alcanivorax dieselolei sp. nov., a novel alkane-degrading bacterium isolated from sea water and deep-sea sediment. IJSEM 55: 1181 - 1186 2005 ( DOI 10.1099/ijs.0.63443-0 , PubMed 15879252 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70074

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID138966.1 )

* These data were automatically processed and therefore are not curated

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Alcanivorax dieselolei strain CGMCC 1.3690

Alcanivorax dieselolei strain CGMCC 1.3690

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