Name: Dermacoccus barathri MT2.1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3925

Type strain:

Species: Dermacoccus barathri

Strain Designation: MT2.1

Culture col. no.: DSM 17574, CIP 109399, NCIMB 14081, CCUG 57203, JCM 14588, IFM 10799

Strain history: CIP <- 2006, DSMZ <- W. Pathom-aree, Newcastle Univ., Newcastle upon Tyne, UK: strain MT2.1

NCBI tax ID(s): 322601 (species)

SI-ID 297166

DSM 17574, NCIMB 14081, CIP 109399, JCM 14588, CCUG 57203

Section

Dermacoccus barathri MT2.1 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from marine sediment.

coccus-shaped
Gram-positive
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Dermacoccaceae*
	Genus	*Dermacoccus*
	Species	**Dermacoccus barathri**
	Full Scientific Name (LPSN)	Dermacoccus barathri Pathom-aree et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #116730]	Gram stain	positive

[Ref.: #116730]	Cell shape	coccus-shaped

[Ref.: #116730]	Motility	no

[Ref.: #19751]	Colony color	Daffodil yellow (1007)
[Ref.: #19751]	Incubation period	10-14 days
[Ref.: #19751]	Cultivation medium used	ISP 2

[Ref.: #19751]	Colony color	Beige (1001)
[Ref.: #19751]	Incubation period	10-14 days
[Ref.: #19751]	Cultivation medium used	ISP 3

[Ref.: #19751]	Colony color	Beige (1001)
[Ref.: #19751]	Incubation period	10-14 days
[Ref.: #19751]	Cultivation medium used	ISP 4

[Ref.: #19751]	Colony color	Beige (1001)
[Ref.: #19751]	Incubation period	10-14 days
[Ref.: #19751]	Cultivation medium used	ISP 5

[Ref.: #19751]	Colony color	Pale yellow
[Ref.: #19751]	Incubation period	10-14 days
[Ref.: #19751]	Cultivation medium used	ISP 6

[Ref.: #19751]	Colony color	Pale yellow
[Ref.: #19751]	Incubation period	10-14 days
[Ref.: #19751]	Cultivation medium used	ISP 7

[Ref.: #19751]	Multicellular complex forming ability	no
[Ref.: #19751]	Medium Name (multicellularity)	ISP 2

[Ref.: #19751]	Multicellular complex forming ability	no
[Ref.: #19751]	Medium Name (multicellularity)	ISP 3

[Ref.: #19751]	Multicellular complex forming ability	no
[Ref.: #19751]	Medium Name (multicellularity)	ISP 4

[Ref.: #19751]	Multicellular complex forming ability	no
[Ref.: #19751]	Medium Name (multicellularity)	ISP 5

[Ref.: #19751]	Multicellular complex forming ability	no
[Ref.: #19751]	Medium Name (multicellularity)	ISP 6

[Ref.: #19751]	Multicellular complex forming ability	no
[Ref.: #19751]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7062]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #7062]

Culture medium growth

[Ref.: #7062]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7062]

Culture medium composition

expand / minimize

[Ref.: #19751]

Culture medium

ISP 2

[Ref.: #19751]

Culture medium growth

[Ref.: #19751]

Culture medium composition

expand / minimize

[Ref.: #19751]

Culture medium

ISP 3

[Ref.: #19751]

Culture medium growth

[Ref.: #19751]

Culture medium composition

expand / minimize

[Ref.: #19751]

Culture medium

ISP 4

[Ref.: #19751]

Culture medium growth

[Ref.: #19751]

Culture medium composition

expand / minimize

[Ref.: #19751]

Culture medium

ISP 5

[Ref.: #19751]

Culture medium growth

[Ref.: #19751]

Culture medium composition

expand / minimize

[Ref.: #19751]

Culture medium

ISP 6

[Ref.: #19751]

Culture medium growth

[Ref.: #19751]

Culture medium composition

expand / minimize

[Ref.: #19751]

Culture medium

ISP 7

[Ref.: #19751]

Culture medium growth

[Ref.: #19751]

Culture medium composition

expand / minimize

[Ref.: #116730]

Culture medium

CIP Medium 338

[Ref.: #116730]

Culture medium growth

[Ref.: #116730]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7062]	growth	28 °C
[Ref.: #19751]	optimum	28 °C
[Ref.: #61237]	growth	30-37 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #7062]	Temperature range	mesophilic
[Ref.: #19751]	Temperature range	mesophilic
[Ref.: #61237]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #61237]

Oxygen tolerance

aerobe

[Ref.: #67770]

Observation

quinones: MK-8(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #68379]	sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #19751]	293	-	-	-	+	-	-	-	-	-	+	-	not determinedn.d.	-	-	-	-	-	-	+	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19751]	575	not determinedn.d.	+	+	+	+	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7062]	Sample type/isolated from	marine sediment
[Ref.: #7062]	Geographic location (country and/or sea, region)	Mariana Trench

[Ref.: #61237]	Sample type/isolated from	Sediment collected at 10 898 m depth
[Ref.: #61237]	Geographic location (country and/or sea, region)	Mariana Trench,Challenger Deep
[Ref.: #61237]	Country	Pacific Ocean

[Ref.: #67770]	Sample type/isolated from	Sediment sample from the Challenger Deep of the Mariana Trench

[Ref.: #116730]	Sample type/isolated from	Environment, Marine sediment, at a depth of 10 898 m
[Ref.: #116730]	Geographic location (country and/or sea, region)	Mariana Trench, Northwest Pacific
[Ref.: #116730]	Country	Pacific Ocean
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY894328 (>99% sequence identity) for Dermacoccus from Microbeatlas

Aquatic Samples	315
Soil Samples	94
Animal Samples	3401
Plant Samples	57
Total Samples	3867

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7062]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19751]	Biosafety level	1	Risk group (German classification)
[Ref.: #116730]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7062]	Dermacoccus barathri strain MT2.1 16S ribosomal RNA gene, partial sequence	AY894328	1468	ENA	322601 tax ID

[Ref.: #7062]	GC-content	67 mol%
[Ref.: #67770]	GC-content	66.8 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #7062]

Culture collection no.

DSM 17574, CIP 109399, NCIMB 14081, CCUG 57203, JCM 14588, IFM 10799

[Ref.: #73434]

SI-ID 297166

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dermacoccus barathri sp. nov. and Dermacoccus profundi sp. nov., novel actinomycetes isolated from deep-sea mud of the Mariana Trench.	Pathom-Aree W, Nogi Y, Ward AC, Horikoshi K, Bull AT, Goodfellow M	Int J Syst Evol Microbiol	10.1099/ijs.0.64250-0	2006	*

References

#7062

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17574

#19751

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#61237 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57203
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#73434

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297166.1 )

#116730 Collection of Institut Pasteur ; Curators of the CIP; CIP 109399
* These data were automatically processed and therefore are not curated

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