Name: Devriesea agamarum DSM 22407
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3919

Type strain:

Species: Devriesea agamarum

Culture col. no.: DSM 22407, CCUG 55056, LMG 24257, IMP 2, JCM 16028

Strain history: LMG 24257 <-- A. Martel IMP2.

NCBI tax ID(s): 472569 (species)

SI-ID 358879

CCUG 55056, LMG 24257, JCM 16028, DSM 22407

Section

Devriesea agamarum DSM 22407 is a microaerophile, spore-forming, mesophilic animal pathogen that was isolated from liver of female agamid lizard, Agama impalearis, that died from dermatitis lesions.

Gram-positive
rod-shaped
spore-forming
animal pathogen
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Dermabacteraceae*
	Genus	*Devriesea*
	Species	**Devriesea agamarum**
	Full Scientific Name (LPSN)	Devriesea agamarum Martel et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32425]	Gram stain	positive

[Ref.: #32425]	Cell length	01-02 µm

[Ref.: #32425]	Cell width	1 µm

[Ref.: #32425]	Cell shape	rod-shaped

[Ref.: #32425]	Motility	no

[Ref.: #60439]

Incubation period

1 day

[Ref.: #32425]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16320]

Culture medium

BHI MEDIUM (DSMZ Medium 215)

[Ref.: #16320]

Culture medium growth

[Ref.: #16320]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16320]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16320]	growth	37 °C
[Ref.: #32425]	growth	25-42 °C
[Ref.: #32425]	optimum	25-30 °C
[Ref.: #60439]	growth	30-42 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #16320]	Temperature range	mesophilic
[Ref.: #32425]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32425]			optimum	7
[Ref.: #32425]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16320]	Oxygen tolerance	microaerophile
[Ref.: #32425]	Oxygen tolerance	facultative anaerobe

[Ref.: #32425]

Ability of spore formation

yes

[Ref.: #32425]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-8, MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32425]	esculin ChEBI	+	hydrolysis
[Ref.: #32425]	fructose ChEBI	+	carbon source
[Ref.: #32425]	galactose ChEBI	+	carbon source
[Ref.: #32425]	glucose ChEBI	+	carbon source
[Ref.: #32425]	maltose ChEBI	+	carbon source
[Ref.: #32425]	mannose ChEBI	+	carbon source
[Ref.: #32425]	melibiose ChEBI	+	carbon source
[Ref.: #32425]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32425]	raffinose ChEBI	+	carbon source
[Ref.: #32425]	sucrose ChEBI	+	carbon source
[Ref.: #32425]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32425]		catalase	+	1.11.1.6
[Ref.: #32425]		urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16320]	Sample type/isolated from	liver of female agamid lizard, Agama impalearis, that died from dermatitis lesions
[Ref.: #16320]	Host species	Agama impalearis
[Ref.: #16320]	Geographic location (country and/or sea, region)	Merelbeke
[Ref.: #16320]	Country	Belgium
[Ref.: #16320]	Country ISO 3 Code	BEL
[Ref.: #16320]	Continent	Europe

[Ref.: #60439]	Sample type/isolated from	Agama impalearis (lizard),liver,dermatitis lesions
[Ref.: #60439]	Sampling date	2004-05-06
[Ref.: #60439]	Geographic location (country and/or sea, region)	Merelbeke
[Ref.: #60439]	Country	Belgium
[Ref.: #60439]	Country ISO 3 Code	BEL
[Ref.: #60439]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Liver of a female agamid lizard Agama impalearis with dermatitis
[Ref.: #67770]	Host species	Agama impalearis
* marker position based on {}

Isolation sources categories

#Infection	#Inflammation	-
#Host	#Reptilia	-
#Host Body-Site	#Other	#Wound
#Host Body-Site	#Organ	#Liver

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU009865 (>99% sequence identity) for Brachybacterium from Microbeatlas

Aquatic Samples	170
Soil Samples	26
Animal Samples	202
Plant Samples	13
Total Samples	411

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16320]	Pathogenicity (animal)	yes
[Ref.: #16320]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16320]	Devriesea agamarum strain IMP2 16S ribosomal RNA gene, partial sequence	EU009865	1476	ENA	472569 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Devriesea agamarum IMP2	GCA_900070355	complete	GenBank	472569 tax ID

[Ref.: #16320]	GC-content	61 mol%	high performance liquid chromatography (HPLC)
[Ref.: #32425]	GC-content	61 mol%

Availability in culture collections External links

[Ref.: #16320]

Culture collection no.

DSM 22407, CCUG 55056, LMG 24257, IMP 2, JCM 16028

[Ref.: #73428]

SI-ID 358879

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome Sequence of Devriesea agamarum, Isolated from Agamid Lizards with Dermatitis.	Haesendonck R, Van Nieuwerburgh F, Haesebrouck F, Deforce D, Pasmans F, Martel A	Genome Announc	10.1128/genomeA.00949-15	2015	*
Phylogeny	Devriesea agamarum gen. nov., sp. nov., a novel actinobacterium associated with dermatitis and septicaemia in agamid lizards.	Martel A, Pasmans F, Hellebuyck T, Haesebrouck F, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.65478-0	2008	*

References

#16320

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22407

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32425

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28648 (see below)

#60439 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55056
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#73428

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID358879.1 )

#28648

IJSEM 2206 2008 ( DOI 10.1099/ijs.0.65478-0 , PubMed 18768630 )

* These data were automatically processed and therefore are not curated

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