Belnapia rosea (DSM 23312, CGMCC 1.10758, CPCC 100156)

Name: Belnapia rosea (DSM 23312, CGMCC 1.10758, CPCC 100156)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 39

Type strain

Culture col. no. DSM 23312 CGMCC 1.10758 CPCC 100156

NCBI tax ID(s) 938405

Special Collections DSMZ Literature strains

History DSMZ <- Y.-Q. Zhang, Inst. Med. Biotechnol., Chinese Academy of Med. Sci. and Peking Union Med. College, Beijing; CPCC 100156 <- R. Jin

Links

Belnapia rosea DSM 23312 is an aerobe, Gram-negative, coccus-shaped bacterium that forms circular colonies and was isolated from forest soil.

Gram-negative coccus-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 401611

DSM 23312

@ref 20215

Last LPSN update 2026-05-29 08:24:55

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Acetobacteraceae

Genus Belnapia

Species Belnapia rosea

Full scientific name Belnapia rosea Jin et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
23242	negative	1.8 µm	1.8 µm	coccus-shaped
125438	negative					98.202

Colony morphology

@ref	Colony color	Colony shape	Incubation period	Medium used
23242	pink to rose, opaque	circular	3 days	TSA

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16783	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
23242	Trypticase Soy Agar (TSA)

Culture temp

@ref	Growth	Type	Temperature (°C)
16783	positive	growth	28
23242	positive	maximum	37
23242	positive	minimum	20
23242	positive	optimum	28-32

Culture pH

@ref	Ability	Type	PH
23242	positive	maximum	8
23242	positive	minimum	5
23242	positive	optimum	7.0-7.5

Physiology and metabolism

Oxygen tolerance

23242

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
125439		96.315

Halophily

@ref	Salt	Growth	Tested relation	Concentration
23242	NaCl	positive	maximum	1 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23242	30916 ChEBI	2-oxoglutarate	+	carbon source
23242	37054 ChEBI	3-hydroxybutyrate	+	carbon source
23242	73918 ChEBI	3-O-methyl-D-glucose	+	carbon source
23242	16449 ChEBI	alanine	+	nitrogen source
23242	17925 ChEBI	alpha-D-glucose	+	carbon source
23242	29016 ChEBI	arginine	+	nitrogen source
23242		casein	-	degradation
23242	62968 ChEBI	cellulose	-	hydrolysis
23242	17108 ChEBI	D-arabinose	+	builds acid from
23242	15824 ChEBI	D-fructose	+	builds acid from
23242	78697 ChEBI	D-fructose 6-phosphate	+	carbon source
23242	28847 ChEBI	D-fucose	+	builds acid from
23242	28847 ChEBI	D-fucose	+	carbon source
23242	12936 ChEBI	D-galactose	+	carbon source
23242	14314 ChEBI	D-glucose 6-phosphate	+	carbon source
23242	15748 ChEBI	D-glucuronate	+	carbon source
23242	62318 ChEBI	D-lyxose	+	builds acid from
23242	17317 ChEBI	D-sorbose	+	builds acid from
23242	16813 ChEBI	galactitol	+	builds acid from
23242	5291 ChEBI	gelatin	-	hydrolysis
23242	17234 ChEBI	glucose	-	fermentation
23242	32323 ChEBI	glucuronamide	+	carbon source
23242	29987 ChEBI	glutamate	+	nitrogen source
23242	28300 ChEBI	glutamine	+	nitrogen source
23242	15443 ChEBI	inulin	+	builds acid from
23242	24898 ChEBI	isoleucine	+	nitrogen source
23242	30849 ChEBI	L-arabinose	+	builds acid from
23242	18287 ChEBI	L-fucose	+	carbon source
23242	62345 ChEBI	L-rhamnose	+	builds acid from
23242	62345 ChEBI	L-rhamnose	+	carbon source
23242	65328 ChEBI	L-xylose	+	builds acid from
23242	25017 ChEBI	leucine	+	nitrogen source
23242	25094 ChEBI	lysine	+	nitrogen source
23242	25115 ChEBI	malate	+	carbon source
23242	17632 ChEBI	nitrate	+	reduction
23242	63043 ChEBI	potassium nitrate	+	nitrogen source
23242	28017 ChEBI	starch	-	degradation
23242	26986 ChEBI	threonine	+	nitrogen source
23242	27897 ChEBI	tryptophan	+	nitrogen source
23242	18186 ChEBI	tyrosine	+	nitrogen source
23242	27266 ChEBI	valine	+	nitrogen source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
23242	15688 ChEBI	acetoin
23242	16136 ChEBI	hydrogen sulfide

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
23242	15688 ChEBI	acetoin	-
23242	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
23242	acid phosphatase	+	3.1.3.2
23242	alkaline phosphatase	+	3.1.3.1
23242	alpha-chymotrypsin	+	3.4.21.1
23242	alpha-fucosidase	-	3.2.1.51
23242	alpha-galactosidase	-	3.2.1.22
23242	alpha-glucosidase	-	3.2.1.20
23242	alpha-mannosidase	-	3.2.1.24
23242	beta-galactosidase	-	3.2.1.23
23242	beta-glucosidase	-	3.2.1.21
23242	beta-glucuronidase	-	3.2.1.31
23242	catalase	+	1.11.1.6
23242	cystine arylamidase	+	3.4.11.3
23242	cytochrome oxidase	-	1.9.3.1
23242	esterase (C 4)	+
23242	esterase lipase (C 8)	+
23242	leucine arylamidase	+	3.4.11.1
23242	lipase (C 14)	-
23242	N-acetyl-beta-glucosaminidase	-	3.2.1.52
23242	naphthol-AS-BI-phosphohydrolase	+
23242	trypsin	+	3.4.21.4
23242	valine arylamidase	+

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	adipate degradation	100	2 of 2
66794	ethanol fermentation	100	2 of 2
66794	4-hydroxymandelate degradation	100	9 of 9
66794	acetate fermentation	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	glycogen metabolism	100	5 of 5
66794	resorcinol degradation	100	2 of 2
66794	valine metabolism	100	9 of 9
66794	quinate degradation	100	2 of 2
66794	phenylmercury acetate degradation	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	cardiolipin biosynthesis	100	7 of 7
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	taurine degradation	100	1 of 1
66794	ceramide biosynthesis	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	ethylmalonyl-CoA pathway	100	5 of 5
66794	L-lactaldehyde degradation	100	3 of 3
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	leucine metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	Entner Doudoroff pathway	90	9 of 10
66794	starch degradation	90	9 of 10
66794	threonine metabolism	90	9 of 10
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	ketogluconate metabolism	87.5	7 of 8
66794	flavin biosynthesis	86.67	13 of 15
66794	photosynthesis	85.71	12 of 14
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	citric acid cycle	85.71	12 of 14
66794	phenylalanine metabolism	84.62	11 of 13
66794	vitamin B1 metabolism	84.62	11 of 13
66794	degradation of aromatic, nitrogen containing compounds	83.33	10 of 12
66794	NAD metabolism	83.33	15 of 18
66794	purine metabolism	82.98	78 of 94
66794	alanine metabolism	82.76	24 of 29
66794	methionine metabolism	80.77	21 of 26
66794	propionate fermentation	80	8 of 10
66794	factor 420 biosynthesis	80	4 of 5
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	gallate degradation	80	4 of 5
66794	histidine metabolism	79.31	23 of 29
66794	tryptophan metabolism	78.95	30 of 38
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	cysteine metabolism	77.78	14 of 18
66794	d-mannose degradation	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	degradation of pentoses	75	21 of 28
66794	CMP-KDO biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	toluene degradation	75	3 of 4
66794	lipid metabolism	74.19	23 of 31
66794	non-pathway related	73.68	28 of 38
66794	proline metabolism	72.73	8 of 11
66794	d-xylose degradation	72.73	8 of 11
66794	vitamin B6 metabolism	72.73	8 of 11
66794	metabolism of disaccharids	72.73	8 of 11
66794	tyrosine metabolism	71.43	10 of 14
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	heme metabolism	71.43	10 of 14
66794	glutathione metabolism	71.43	10 of 14
66794	glycolysis	70.59	12 of 17
66794	myo-inositol biosynthesis	70	7 of 10
66794	pyrimidine metabolism	68.89	31 of 45
66794	degradation of sugar acids	68	17 of 25
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	allantoin degradation	66.67	6 of 9
66794	enterobactin biosynthesis	66.67	2 of 3
66794	IAA biosynthesis	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	oxidative phosphorylation	63.74	58 of 91
66794	degradation of sugar alcohols	62.5	10 of 16
66794	arginine metabolism	62.5	15 of 24
66794	carnitine metabolism	62.5	5 of 8
66794	sulfate reduction	61.54	8 of 13
66794	urea cycle	61.54	8 of 13
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	phosphatidylethanolamine bioynthesis	61.54	8 of 13
66794	degradation of hexoses	61.11	11 of 18
66794	lipoate biosynthesis	60	3 of 5
66794	coenzyme M biosynthesis	60	6 of 10
66794	phenol degradation	60	12 of 20
66794	creatinine degradation	60	3 of 5
66794	bile acid biosynthesis, neutral pathway	58.82	10 of 17
66794	propanol degradation	57.14	4 of 7
66794	androgen and estrogen metabolism	56.25	9 of 16
66794	nitrate assimilation	55.56	5 of 9
66794	lysine metabolism	54.76	23 of 42
66794	3-phenylpropionate degradation	53.33	8 of 15
66794	selenocysteine biosynthesis	50	3 of 6
66794	ribulose monophosphate pathway	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	biotin biosynthesis	50	2 of 4
66794	cyclohexanol degradation	50	2 of 4
66794	lactate fermentation	50	2 of 4
66794	chlorophyll metabolism	50	9 of 18
66794	dolichyl-diphosphooligosaccharide biosynthesis	45.45	5 of 11
66794	polyamine pathway	43.48	10 of 23
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	ascorbate metabolism	40.91	9 of 22
66794	carotenoid biosynthesis	40.91	9 of 22
66794	elloramycin biosynthesis	40	2 of 5
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	3-chlorocatechol degradation	40	2 of 5
66794	glycine betaine biosynthesis	40	2 of 5
66794	hydrogen production	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	O-antigen biosynthesis	40	2 of 5
66794	vitamin K metabolism	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	cholesterol biosynthesis	36.36	4 of 11
66794	sulfoquinovose degradation	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	pantothenate biosynthesis	33.33	2 of 6
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	alginate biosynthesis	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture composition	Isolation procedure
16783	forest soil	Hainan Island	China	CHN	Asia
23242						YM agar	4.0 g yeast extract (Difco), 10.0 g malt extract (Difco), 4.0 g glucose (Difco), 15.0 g agar and 1 l distilled water, pH 7.2	dilution plating

Taxonmaps

69479

Global distribution of 16S sequence HQ641379 (>99% sequence identity) for Belnapia rosea subclade from Microbeatlas

Aquatic Samples	326
Soil Samples	1033
Animal Samples	952
Plant Samples	161
Total Samples	2472

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16783	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2596583546 annotated assembly for Belnapia rosea CGMCC 1.10758	scaffold	GCA_900104205	938405.4	2596583546	938405	55.34
66792	IMG-taxon 2623620456 annotated assembly for Belnapia rosea CPCC 100156	scaffold	GCA_900101615	938405.3	2623620456	938405	53.98

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16783	Belnapia rosea strain CPCC 100156 16S ribosomal RNA gene, partial sequence	HQ641379	1473		938405

GC content

@ref	GC-content (mol%)	Method
16783	70.3	thermal denaturation, midpoint method (Tm)
23242	70.30	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2596583546 annotated assembly for Belnapia rosea CGMCC 1.10758
NCBI: GCA_900104205

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	89.79	no
125439	gram_stain	BacteriaNetⓘ	negative	87.17	no
125439	motility	BacteriaNetⓘ	yes	58.62	no
125439	spore_formation	BacteriaNetⓘ	no	96.32	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Belnapia rosea CPCC 100156
NCBI: GCA_900101615.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.20	yes
125438	anaerobic	anaerobicⓘ	no	94.11	yes
125438	aerobic	aerobicⓘ	yes	79.12	yes
125438	spore-forming	spore-formingⓘ	no	84.11	no
125438	thermophilic	thermophileⓘ	no	94.29	no
125438	flagellated	motile2+ⓘ	yes	66.38	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Rhizospheric microbiomes differ between dormant and active Potaninia mongolica in the Gobi desert of Mongolia.	Erdenetsetseg B, Arakawa K, Galipon J, Undrakhbold S, Fukuda S, Boldgiv B.	Sci Rep	10.1038/s41598-025-22696-7	2025
Phylogeny	Genome analysis suggests the bacterial family Acetobacteraceae is a source of undiscovered specialized metabolites.	Guzman J, Vilcinskas A.	Antonie Van Leeuwenhoek	10.1007/s10482-021-01676-7	2022
Genetics	Bacteriobiota of the Cave Church of Sts. Peter and Paul in Serbia-Culturable and Non-Culturable Communities' Assessment in the Bioconservation Potential of a Peculiar Fresco Painting.	Dimkic I, Copic M, Petrovic M, Stupar M, Savkovic Z, Knezevic A, Subakov Simic G, Ljaljevic Grbic M, Unkovic N.	Int J Mol Sci	10.3390/ijms24021016	2023
Genetics	Functional Signatures of the Epiphytic Prokaryotic Microbiome of Agaves and Cacti.	Flores-Nunez VM, Fonseca-Garcia C, Desgarennes D, Eloe-Fadrosh E, Woyke T, Partida-Martinez LP.	Front Microbiol	10.3389/fmicb.2019.03044	2019
Phylogeny	Belnapia mucosa sp. nov. and Belnapia arida sp. nov., isolated from desert biocrust.	Molina-Menor E, Vidal-Verdu A, Satari L, Calonge-Garcia A, Pascual J, Pereto J, Porcar M	Int J Syst Evol Microbiol	10.1099/ijsem.0.004837	2021
Phylogeny	Siccirubricoccus phaeus sp. nov., isolated from oil reservoir water and emended description of the genus Siccirubricoccus.	Li FL, Zhang YX, Zhang YK, Chen WF, Li WJ, Wang L	Antonie Van Leeuwenhoek	10.1007/s10482-021-01516-8	2021
Phylogeny	Belnapia soli sp. nov., a proteobacterium isolated from grass soil.	Jin L, Lee HG, No KJ, Ko SR, Kim HS, Ahn CY, Oh HM	Int J Syst Evol Microbiol	10.1099/ijs.0.045302-0	2012
Phylogeny	Description of Belnapia rosea sp. nov. and emended description of the genus Belnapia Reddy et al. 2006.	Jin R, Su J, Liu HY, Wei YZ, Li QP, Zhang YQ, Yu LY	Int J Syst Evol Microbiol	10.1099/ijs.0.031021-0	2011

References

#16783	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23312
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23242	Rong Jin, Jing Su, Hong-Yu Liu, Yu-Zhen Wei, Qiu-Ping Li, Yu-Qin Zhang, Li-Yan Yu: Description of Belnapia rosea sp. nov. and emended description of the genus Belnapia Reddy et al. 2006. IJSEM 62: 705 - 709 2012 ( DOI 10.1099/ijs.0.031021-0 , PubMed 21551325 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Belnapia rosea (DSM 23312, CGMCC 1.10758, CPCC 100156)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900104205

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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