Deinococcus aquatilis (DSM 23025, CCM 7524, CCUG 53370)

Name: Deinococcus aquatilis (DSM 23025, CCM 7524, CCUG 53370)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3891

Type strain

Strain Designation MIFE 35041/06

Culture col. no. DSM 23025 CCM 7524 CCUG 53370 MIFE 35041/06

NCBI tax ID(s) 1121378 519440

Special Collections DSMZ CCUG Literature strains

History <- CCUG <- Anonymous

Links

Deinococcus aquatilis MIFE 35041/06 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from industry water.

Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 303347

CCUG 53370,CCM 7524,LMG 28567,DSM 23025

@ref 20215

Last LPSN update 2026-02-09 11:18:36

Domain Bacteria

Phylum Deinococcota

Class Deinococci

Order Deinococcales

Family Deinococcaceae

Genus Deinococcus

Species Deinococcus aquatilis

Full scientific name Deinococcus aquatilis Kämpfer et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
31203	positive	rod-shaped

Pigmentation

31203

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16655	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16655	positive	growth	28
31203	positive	growth	15-36
31203	positive	optimum	30
59877	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
31203	positive	optimum	08-09
31203	positive	growth	5.5-11	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
31203	aerobe
59877	aerobe

Spore formation

31203

Spore formationno

Observation

31203

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31203	30089 ChEBI	acetate	+	carbon source
31203	17234 ChEBI	glucose	+	carbon source
31203	17306 ChEBI	maltose	+	carbon source
31203	506227 ChEBI	N-acetylglucosamine	+	carbon source
31203	17992 ChEBI	sucrose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31203	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	-
#Engineered	#Industrial	#Engineered product
#Engineered	#Waste	#Industrial wastewater

Isolation

@ref	Sample type	Sampling date	Country	Country ISO 3 Code	Continent
16655	industry water		Sweden	SWE	Europe
59877	Water,industry	2006	Sweden	SWE	Europe

Taxonmaps

69479

Global distribution of 16S sequence AM940971 (>99% sequence identity) for Deinococcus from Microbeatlas

Aquatic Samples	532
Soil Samples	262
Animal Samples	943
Plant Samples	248
Total Samples	1985

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16655	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM37844v1 assembly for Deinococcus aquatilis DSM 23025	scaffold	GCA_000378445	1121378.3	2519899682	1121378	54.34

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16655	Deinococcus aquatilis partial 16S rRNA gene, type strain CCUG 53370T	AM940971	1363		519440

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Deinococcus aquatilis DSM 23025
NCBI: GCA_000378445

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	89.60	no
125439	gram_stain	BacteriaNetⓘ	negative	65.10	no
125439	motility	BacteriaNetⓘ	no	71.30	no
125439	spore_formation	BacteriaNetⓘ	no	80.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Deinococcus aquatilis DSM 23025 DSM 23025
NCBI: GCA_000378445.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	52.82	no
125438	anaerobic	anaerobicⓘ	no	91.05	yes
125438	aerobic	aerobicⓘ	yes	83.04	yes
125438	spore-forming	spore-formingⓘ	no	76.87	no
125438	thermophilic	thermophileⓘ	no	87.23	yes
125438	flagellated	motile2+ⓘ	no	78.41	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Engineering a high-sugar tolerant strain of Saccharomyces cerevisiae for efficient trehalose production using a cell surface display approach.	Tulsook K, Bussadee P, Arnthong J, Mhuantong W, U-Thai P, Trakarnpaiboon S, Champreda V, Suwannarangsee S.	Bioresour Bioprocess	10.1186/s40643-024-00816-x	2024
Metabolism	Arsinothricin, an arsenic-containing non-proteinogenic amino acid analog of glutamate, is a broad-spectrum antibiotic.	Nadar VS, Chen J, Dheeman DS, Galvan AE, Yoshinaga-Sakurai K, Kandavelu P, Sankaran B, Kuramata M, Ishikawa S, Rosen BP, Yoshinaga M, Yoshinaga M.	Commun Biol	10.1038/s42003-019-0365-y	2019
Phylogeny	Airborne bacterial communities in residences: similarities and differences with fungi.	Adams RI, Miletto M, Lindow SE, Taylor JW, Bruns TD.	PLoS One	10.1371/journal.pone.0091283	2014
	Alterations of Urinary Microbiota in Type 2 Diabetes Mellitus with Hypertension and/or Hyperlipidemia.	Liu F, Ling Z, Xiao Y, Yang Q, Wang B, Zheng L, Jiang P, Li L, Wang W.	Front Physiol	10.3389/fphys.2017.00126	2017
Phylogeny	Deinococcus metalli sp. nov., isolated from an abandoned lead-zinc mine.	Feng GD, Wang YH, Li YX, Zhu HH	Int J Syst Evol Microbiol	10.1099/ijsem.0.000439	2015
Phylogeny	Deinococcus puniceus sp. nov., a bacterium isolated from soil-irradiated gamma radiation.	Lee JJ, Srinivasan S, Lim S, Joe M, Im S, Kim MK	Curr Microbiol	10.1007/s00284-014-0748-8	2014
Phylogeny	Deinococcus aquatilis sp. nov., isolated from water.	Kampfer P, Lodders N, Huber B, Falsen E, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/001206-0	2008

References

#16655	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23025
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27530	IJSEM 2803 2008 ( DOI 10.1099/ijs.0.2008/001206-0 , PubMed 19060062 )
#31203	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27530
#59877	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53370
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Deinococcus aquatilis (DSM 23025, CCM 7524, CCUG 53370)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000378445

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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