Name: Deinococcus aquatilis MIFE 35041/06
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3891

Type strain:

Species: Deinococcus aquatilis

Strain Designation: MIFE 35041/06

Culture col. no.: DSM 23025, CCM 7524, CCUG 53370

Strain history: <- CCUG <- Anonymous

NCBI tax ID(s): 1121378 (strain), 519440 (species)

SI-ID 303347

CCUG 53370, CCM 7524, LMG 28567, DSM 23025

Section

Deinococcus aquatilis MIFE 35041/06 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from industry water.

Gram-positive
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Deinococcales*
	Family	*Deinococcaceae*
	Genus	*Deinococcus*
	Species	**Deinococcus aquatilis**
	Full Scientific Name (LPSN)	Deinococcus aquatilis Kämpfer et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #31203]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %98.607

[Ref.: #31203]	Cell shape	rod-shaped

[Ref.: #31203]	Motility	no

[Ref.: #31203]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16655]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #16655]

Culture medium growth

[Ref.: #16655]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16655]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16655]	growth	28 °C
[Ref.: #31203]	growth	15-36 °C
[Ref.: #31203]	optimum	30 °C
[Ref.: #59877]	growth	30 °C

[Ref.: #16655]	Temperature range	mesophilic
[Ref.: #31203]	Temperature range	mesophilic
[Ref.: #59877]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31203]			optimum	08-09
[Ref.: #31203]			growth	5.5-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31203]	Oxygen tolerance	aerobe
[Ref.: #59877]	Oxygen tolerance	aerobe

[Ref.: #31203]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.259

[Ref.: #31203]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31203]	acetate ChEBI	+	carbon source
[Ref.: #31203]	glucose ChEBI	+	carbon source
[Ref.: #31203]	maltose ChEBI	+	carbon source
[Ref.: #31203]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #31203]	sucrose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31203]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16655]	Sample type/isolated from	industry water
[Ref.: #16655]	Country	Sweden
[Ref.: #16655]	Country ISO 3 Code	SWE
[Ref.: #16655]	Continent	Europe

[Ref.: #59877]	Sample type/isolated from	Water,industry
[Ref.: #59877]	Sampling date	2006
[Ref.: #59877]	Country	Sweden
[Ref.: #59877]	Country ISO 3 Code	SWE
[Ref.: #59877]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Engineered	#Industrial	#Engineered product
#Engineered	#Waste	#Industrial wastewater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM940971 (>99% sequence identity) for Deinococcus from Microbeatlas

Aquatic Samples	532
Soil Samples	262
Animal Samples	943
Plant Samples	248
Total Samples	1985

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16655]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16655]	Deinococcus aquatilis partial 16S rRNA gene, type strain CCUG 53370T	AM940971	1363	ENA	519440 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Deinococcus aquatilis DSM 23025	GCA_000378445	scaffold	GenBank	1121378 tax ID	*
[Ref.: #66792]	Deinococcus aquatilis DSM 23025	1121378.3	wgs	PATRIC	1121378 tax ID	*
[Ref.: #66792]	Deinococcus aquatilis DSM 23025	2519899682	draft	JGI IMG/M	1121378 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Deinococcus aquatilis DSM 23025 DSM 23025 NCBI: GCA_000378445.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Deinococcus aquatilis DSM 23025 DSM 23025 NCBI: GCA_000378445.1
[Ref.: #69480]	motile	no	90.311	yes
[Ref.: #69480]	flagellated	no	94.194	no
[Ref.: #69480]	gram-positive	yes	75.421	no
[Ref.: #69480]	anaerobic	no	99.01	yes
[Ref.: #69480]	aerobic	yes	88.957	yes
[Ref.: #69480]	halophile	no	96.653	no
[Ref.: #69480]	spore-forming	no	90.782	yes
[Ref.: #69480]	thermophile	no	92.937	yes
[Ref.: #69480]	glucose-util	yes	83.66	yes
[Ref.: #69480]	glucose-ferment	no	88.93	no

Availability in culture collections External links

[Ref.: #16655]

Culture collection no.

DSM 23025, CCM 7524, CCUG 53370

[Ref.: #73401]

SI-ID 303347

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Deinococcus metalli sp. nov., isolated from an abandoned lead-zinc mine.	Feng GD, Wang YH, Li YX, Zhu HH	Int J Syst Evol Microbiol	10.1099/ijsem.0.000439	2015	*
Phylogeny	Deinococcus puniceus sp. nov., a bacterium isolated from soil-irradiated gamma radiation.	Lee JJ, Srinivasan S, Lim S, Joe M, Im S, Kim MK	Curr Microbiol	10.1007/s00284-014-0748-8	2014	*
Phylogeny	Deinococcus aquatilis sp. nov., isolated from water.	Kampfer P, Lodders N, Huber B, Falsen E, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/001206-0	2008	*

References

#16655

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23025

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31203

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27530 (see below)

#59877 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53370

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73401

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID303347.1 )

#27530

IJSEM 2803 2008 ( DOI 10.1099/ijs.0.2008/001206-0 , PubMed 19060062 )

* These data were automatically processed and therefore are not curated

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Deinococcus aquatilis DSM 23025 DSM 23025

Deinococcus aquatilis DSM 23025 DSM 23025

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