Name: Deinococcus aquaticus PB314
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 3882

Type strain:

Species: Deinococcus aquaticus

Strain Designation: PB314

Culture col. no.: DSM 18376, KCTC 12552, NBRC 101311

Strain history: <- ST Lee, KAIST

NCBI tax ID(s): 328692 (species)

SI-ID 291599

LMG 23718, KCTC 12552, NBRC 101311, DSM 18376

Special Collections

Section

When using BacDive for research please cite our paper

Deinococcus aquaticus PB314 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from freshwater with sediment of Gapcheon.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Deinococcales*
	Family	*Deinococcaceae*
	Genus	*Deinococcus*
	Species	**Deinococcus aquaticus**
	Full Scientific Name (LPSN)	Deinococcus aquaticus Im et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #31700]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #31700]	Cell length	2.5-3 µm

[Ref.: #31700]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #67771]	Motility	no

[Ref.: #31700]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7439]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7439]

Culture medium growth

[Ref.: #7439]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7439]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7439]	growth	28 °C
[Ref.: #31700]	growth	20-37 °C
[Ref.: #31700]	optimum	30 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #31700]			optimum	7
[Ref.: #31700]			growth	6-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31700]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31700]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31700]		NaCl		growth	0-3	%
[Ref.: #31700]		NaCl		optimum	0-3	%

[Ref.: #31700]	Observation	aggregates in chains
[Ref.: #67771]	Observation	quinones: MK-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31700]	esculin ChEBI	+	hydrolysis
[Ref.: #31700]	glucose ChEBI	+	carbon source
[Ref.: #31700]	glycogen ChEBI	+	carbon source
[Ref.: #31700]	maltose ChEBI	+	carbon source
[Ref.: #31700]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #31700]	proline ChEBI	+	carbon source
[Ref.: #31700]	sucrose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31700]		catalase	+	1.11.1.6
[Ref.: #31700]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7439]	Sample type/isolated from	freshwater with sediment of Gapcheon
[Ref.: #7439]	Geographic location (country and/or sea, region)	Daejeon City
[Ref.: #7439]	Country	Republic of Korea
[Ref.: #7439]	Country ISO 3 Code	KOR
[Ref.: #7439]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From freshwater stream
[Ref.: #67771]	Geographic location (country and/or sea, region)	the River Gapcheon near KAIST, Daejeon
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ017708 (>99% sequence identity) for Deinococcus aquaticus from Microbeatlas

Aquatic Samples	113
Soil Samples	14
Animal Samples	57
Plant Samples	9
Total Samples	193

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7439]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7439]	Deinococcus aquaticus strain PB314 16S ribosomal RNA gene, partial sequence	DQ017708	1459	GenBank ENA	328692 tax ID

[Ref.: #7439]

GC-content

68.3 mol%

Availability in culture collections External links

[Ref.: #7439]

Culture collection no.

DSM 18376, KCTC 12552, NBRC 101311

[Ref.: #73392]

SI-ID 291599

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Deinococcus knuensis sp. nov., a bacterium isolated from river water.	Lee JJ, Lee YH, Park SJ, Lee SY, Park S, Lee DS, Kang IK, Ten LN, Jung HY	Antonie Van Leeuwenhoek	10.1007/s10482-016-0813-3	2016	*
Phylogeny	Deinococcus budaensis sp. nov., a mesophilic species isolated from a biofilm sample of a hydrothermal spring cave.	Makk J, Toth EM, Anda D, Pal S, Schumann P, Kovacs AL, Madl-Szonyi J, Marialigeti K, Borsodi AK	Int J Syst Evol Microbiol	10.1099/ijsem.0.001519	2016	*
Phylogeny	Deinococcus seoulensis sp. nov., a bacterium isolated from sediment at Han River in Seoul, Republic of Korea.	Lee JJ, Lee YH, Park SJ, Lim S, Jeong SW, Lee SY, Cho YJ, Kim MK, Jung HY	J Microbiol	10.1007/s12275-016-6253-y	2016	*
Phylogeny	Deinococcus antarcticus sp. nov., isolated from soil.	Dong N, Li HR, Yuan M, Zhang XH, Yu Y	Int J Syst Evol Microbiol	10.1099/ijs.0.066324-0	2014	*
Phylogeny	Deinococcus daejeonensis sp. nov., isolated from sludge in a sewage disposal plant.	Srinivasan S, Kim MK, Lim S, Joe M, Lee M	Int J Syst Evol Microbiol	10.1099/ijs.0.033316-0	2011	*
Phylogeny	Deinococcus depolymerans sp. nov., a gamma- and UV-radiation-resistant bacterium, isolated from a naturally radioactive site.	Asker D, Awad TS, McLandsborough L, Beppu T, Ueda K	Int J Syst Evol Microbiol	10.1099/ijs.0.013482-0	2010	*
Phylogeny	Deinococcus aquaticus sp. nov., isolated from fresh water, and Deinococcus caeni sp. nov., isolated from activated sludge.	Im WT, Jung HM, Ten LN, Kim MK, Bora N, Goodfellow M, Lim S, Jung J, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.64082-0	2008	*

References

#7439

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18376

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31700

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27977 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#73392

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID291599.1 )

#27977

IJSEM 2348 2008 ( DOI 10.1099/ijs.0.64082-0 , PubMed 18842854 )

* These data were automatically processed and therefore are not curated

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