Deinococcus caeni (DSM 18373, KCTC 12553, NBRC 101312)

Name: Deinococcus caeni (DSM 18373, KCTC 12553, NBRC 101312)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3881

Type strain

Strain Designation Ho-08

Culture col. no. DSM 18373 KCTC 12553 NBRC 101312 Ho-08

NCBI tax ID(s) 569127

Special Collections DSMZ KCTC Literature strains

History <- Sung Taik Lee; Ho08 <- ST Lee, KAIST

Links

Deinococcus caeni Ho-08 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from activated sludge, wastewater treatment plant.

Gram-negative coccus-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 292198

LMG 23721,KCTC 12553,NBRC 101312,DSM 18373

@ref 20215

Last LPSN update 2025-12-16 09:47:40

Domain Thermotogati

Phylum Deinococcota

Class Deinococci

Order Deinococcales

Family Deinococcaceae

Genus Deinococcus

Species Deinococcus caeni

Full scientific name Deinococcus caeni Im et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell shape
31700	negative	02-03 µm	coccus-shaped
67771			rod-shaped
67771	negative

Pigmentation

31700

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7438	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7438	positive	growth	28	mesophilic
31700	positive	growth	20-37
31700	positive	optimum	30	mesophilic
67771	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
31700	positive	optimum	7
31700	positive	growth	6-9.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
31700	aerobe
67771	aerobe

Spore formation

@ref	Spore formation
31700
67771

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31700	NaCl	positive	growth	0-3 %
31700	NaCl	positive	optimum	0-3 %

Observation

@ref	Observation
31700	aggregates in chains
67771	quinones: MK-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31700	17234 ChEBI	glucose	+	carbon source
31700	28087 ChEBI	glycogen	+	carbon source
31700	17306 ChEBI	maltose	+	carbon source
31700	506227 ChEBI	N-acetylglucosamine	+	carbon source
31700	26271 ChEBI	proline	+	carbon source
31700	17992 ChEBI	sucrose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31700	catalase	+	1.11.1.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Activated sludge
#Engineered	#Waste	#Water treatment plant

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7438	activated sludge, wastewater treatment plant	Daejeon City	Republic of Korea	KOR	Asia
67771	From activated sludge, wastewater-treatment plant that receives leachate from a landfill site	Daejeon	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence DQ017709 (>99% sequence identity) for Deinococcus caeni from Microbeatlas

Aquatic Samples	580
Soil Samples	73
Animal Samples	1109
Plant Samples	26
Total Samples	1788

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7438	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3954493v1 assembly for Deinococcus caeni NBRC 101312	contig	GCA_039544935	569127	57.68
124043	ASM4266174v1 assembly for Deinococcus caeni NBRC 101312	contig	GCA_042661745	569127	47.01

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7438	Deinococcus caeni strain Ho-08 16S ribosomal RNA gene, partial sequence	DQ017709	1458		569127

GC content

7438

GC-content (mol%)68.4

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Deinococcus knuensis sp. nov., a bacterium isolated from river water.	Lee JJ, Lee YH, Park SJ, Lee SY, Park S, Lee DS, Kang IK, Ten LN, Jung HY	Antonie Van Leeuwenhoek	10.1007/s10482-016-0813-3	2016
Phylogeny	Deinococcus seoulensis sp. nov., a bacterium isolated from sediment at Han River in Seoul, Republic of Korea.	Lee JJ, Lee YH, Park SJ, Lim S, Jeong SW, Lee SY, Cho YJ, Kim MK, Jung HY	J Microbiol	10.1007/s12275-016-6253-y	2016
Phylogeny	Deinococcus daejeonensis sp. nov., isolated from sludge in a sewage disposal plant.	Srinivasan S, Kim MK, Lim S, Joe M, Lee M	Int J Syst Evol Microbiol	10.1099/ijs.0.033316-0	2011
Phylogeny	Deinococcus depolymerans sp. nov., a gamma- and UV-radiation-resistant bacterium, isolated from a naturally radioactive site.	Asker D, Awad TS, McLandsborough L, Beppu T, Ueda K	Int J Syst Evol Microbiol	10.1099/ijs.0.013482-0	2010
Phylogeny	Deinococcus aquaticus sp. nov., isolated from fresh water, and Deinococcus caeni sp. nov., isolated from activated sludge.	Im WT, Jung HM, Ten LN, Kim MK, Bora N, Goodfellow M, Lim S, Jung J, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.64082-0	2008

References

#7438	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18373
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27977	IJSEM 2348 2008 ( DOI 10.1099/ijs.0.64082-0 , PubMed 18842854 )
#31700	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27977
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Deinococcus caeni (DSM 18373, KCTC 12553, NBRC 101312)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039544935

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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