Name: Deinococcus radiopugnans DSM 12027
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3861

Type strain:

Species: Deinococcus radiopugnans

Culture col. no.: DSM 12027, ATCC 19172, JCM 16872, UWO 293, MIT 248, CCM 2785, IFO 15348, JCM 21312, NBRC 15348, NCIMB 13155

Strain history: DSM 12027 <-- ATCC 19172 <-- S. H. Hutner MIT 248 (Micrococcus roseus) <-- R. G. E. Murray <-- N. Davis et al. UWO 293.

NCBI tax ID(s): 585398 (strain), 57497 (species)

SI-ID 46559

ATCC 19172, DSM 12027, NCIMB 13155, CCM2785, IFO 15348, NBRC 15348, BCRC 12856, CCRC 12856, IAM 14780, JCM 21312, JCM 16872, LMG 28569

Other strains from Deinococcus radiopugnans

D. radiopugnans STI07175(IMET), Hirsch604, IMET ...

Section

Deinococcus radiopugnans DSM 12027 is a mesophilic bacterium that was isolated from irradiated haddock.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Deinococcales*
	Family	*Deinococcaceae*
	Genus	*Deinococcus*
	Species	**Deinococcus radiopugnans**
	Full Scientific Name (LPSN)	Deinococcus radiopugnans Brooks and Murray 1981

Synonym

Deinococcus swuensis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %99.999

[Ref.: #69480]	Motility	no Confidence in %93.733

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4580]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #4580]

Culture medium growth

[Ref.: #4580]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4580]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4580]			growth	30 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #4580]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %97
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.018

[Ref.: #4580]	Murein short key	A21.01
[Ref.: #4580]	Murein types	A3ß L-Orn-Gly₂_-₃

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4580]	Sample type/isolated from	irradiated haddock
[Ref.: #4580]	Country	USA
[Ref.: #4580]	Country ISO 3 Code	USA
[Ref.: #4580]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Irradiated haddock
* marker position based on {}

Isolation sources categories

#Host

#Fishes

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Y11334 (>99% sequence identity) for Deinococcus from Microbeatlas

Aquatic Samples	350
Soil Samples	115
Animal Samples	941
Plant Samples	153
Total Samples	1559

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4580]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4580]	D.radiopugnans 16S rRNA gene	Y11334	1469	ENA	585398 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Deinococcus radiopugnans ATCC 19172	GCA_006335125	contig	GenBank	585398 tax ID
[Ref.: #66792]	Deinococcus radiopugnans ATCC 19172 DSM 12027	GCA_014201625	contig	GenBank	585398 tax ID	*
[Ref.: #66792]	Deinococcus radiopugnans ATCC 19172	585398.6	wgs	PATRIC	585398 tax ID	*
[Ref.: #66792]	Deinococcus radiopugnans ATCC 19172	585398.4	plasmid	PATRIC	585398 tax ID	*
[Ref.: #66792]	Deinococcus radiopugnans ATCC 19172 strain DSM 12027	585398.8	wgs	PATRIC	585398 tax ID	*
[Ref.: #66792]	Deinococcus radiopugnans DSM 12027	2861237949	draft	JGI IMG/M	585398 tax ID	*

[Ref.: #67770]

GC-content

68 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Deinococcus radiopugnans ATCC 19172 strain DSM 12027 PATRIC: 585398.8
[Ref.: #69481]	spore-forming	no	97	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Deinococcus radiopugnans ATCC 19172 PATRIC: 585398.6
[Ref.: #69480]	gram-positive	yes	87.307	no
[Ref.: #69480]	anaerobic	no	98.486	no
[Ref.: #69480]	halophile	no	90.826	no
[Ref.: #69480]	spore-forming	no	91.335	no
[Ref.: #69480]	glucose-util	yes	89.629	no
[Ref.: #69480]	thermophile	no	94.7	yes
[Ref.: #69480]	flagellated	no	96.162	no
[Ref.: #69480]	aerobic	yes	91.439	no
[Ref.: #69480]	motile	no	88.691	no
[Ref.: #69480]	glucose-ferment	no	90.029	no

Availability in culture collections External links

[Ref.: #4580]

Culture collection no.

DSM 12027, ATCC 19172, JCM 16872, UWO 293, MIT 248, CCM 2785, IFO 15348, JCM 21312, NBRC 15348, NCIMB 13155

[Ref.: #73371]

SI-ID 46559

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Genome based reclassification of Deinococcus swuensis as a heterotypic synonym of Deinococcus radiopugnans.	Lakra P, Verma H, Talwar C, Singh DN, Singhvi N, Lal R, Gupta V	Int J Syst Evol Microbiol	10.1099/ijsem.0.004879	2021	*
Phylogeny	Deinococcus humi sp. nov., isolated from soil.	Srinivasan S, Lee JJ, Lim S, Joe M, Kim MK	Int J Syst Evol Microbiol	10.1099/ijs.0.037234-0	2012	*
Genetics	Development of versatile shuttle vectors for Deinococcus grandis.	Satoh K, Tu Z, Ohba H, Narumi I	Plasmid	10.1016/j.plasmid.2009.01.005	2009	*

References

#4580

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12027

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73371

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID46559.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Deinococcus radiopugnans in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Deinococcus radiopugnans ATCC 19172 strain DSM 12027

Deinococcus radiopugnans ATCC 19172

Change proposal

Change proposal