Name: Parapusillimonas granuli Ch-07
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 386

Type strain:

Species: Parapusillimonas granuli

Strain Designation: Ch-07, Ch07

Culture col. no.: DSM 18079, KCTC 12668, LMG 24012

Strain history: <- DC Yang, Kyunghee Univ.

NCBI tax ID(s): 380911 (species)

SI-ID 294568

LMG 24012, KCTC 12668, DSM 18079

Other strains from Parapusillimonas granuli

P. granuli BZ45, DSM 22813

Section

Parapusillimonas granuli Ch-07 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from granules from a wastewater-treatment bioreactor of an alcohol fermentation factory.

Gram-negative
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Alcaligenaceae*
	Genus	*Parapusillimonas*
	Species	**Parapusillimonas granuli**
	Full Scientific Name (LPSN)	Parapusillimonas granuli Kim et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #69480]	Motility	yes Confidence in %96.249

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7380]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)

[Ref.: #7380]

Culture medium growth

[Ref.: #7380]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7380]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7380]			growth	30 °C
[Ref.: #67771]			growth	28 °C

[Ref.: #7380]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.971

[Ref.: #67771]

Observation

quinones: Q-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7380]	Sample type/isolated from	granules from a wastewater-treatment bioreactor of an alcohol fermentation factory
[Ref.: #7380]	Country	Republic of Korea
[Ref.: #7380]	Country ISO 3 Code	KOR
[Ref.: #7380]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From granule, wastewater-treatment bioreactor of an alcohol fermentation factory
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Bioreactor	-
#Engineered	#Industrial	#Plant (Factory)
#Engineered	#Waste	#Water treatment plant

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7380]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7380]	Parapusillimonas granuli strain Ch07 16S ribosomal RNA gene, partial sequence	DQ466075	1449	ENA	380911 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Parapusillimonas granuli DSM 18079	GCA_014202705	scaffold	GenBank	380911 tax ID	*
[Ref.: #66792]	Parapusillimonas granuli LMG 24012	GCA_013416525	contig	GenBank	380911 tax ID	*
[Ref.: #66792]	Parapusillimonas granuli strain DSM 18079	380911.4	wgs	PATRIC	380911 tax ID	*
[Ref.: #66792]	Parapusillimonas granuli strain LMG 24012	380911.3	wgs	PATRIC	380911 tax ID	*
[Ref.: #66792]	Parapusillimonas granuli DSM 18079	2861602684	draft	JGI IMG/M	380911 tax ID	*

[Ref.: #7380]	GC-content	67.9±0.1 mol%
[Ref.: #67771]	GC-content	72.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Parapusillimonas granuli DSM 18079 NCBI: GCA_014202705.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Parapusillimonas granuli DSM 18079 NCBI: GCA_014202705.1
[Ref.: #69480]	flagellated	no	75.227	no
[Ref.: #69480]	gram-positive	no	98.237	yes
[Ref.: #69480]	anaerobic	no	97.374	yes
[Ref.: #69480]	aerobic	yes	87.7	yes
[Ref.: #69480]	halophile	no	86.664	no
[Ref.: #69480]	spore-forming	no	93.013	no
[Ref.: #69480]	glucose-util	no	74.166	no
[Ref.: #69480]	thermophile	no	97.546	yes
[Ref.: #69480]	glucose-ferment	no	91.882	no
[Ref.: #69480]	motile	yes	86.232	no

Availability in culture collections External links

[Ref.: #7380]

Culture collection no.

DSM 18079, KCTC 12668, LMG 24012

[Ref.: #70066]

SI-ID 294568

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Caenimicrobium hargitense gen. nov., sp. nov., a new member of the family Alcaligenaceae (Betaproteobacteria) isolated from activated sludge.	Felfoldi T, Schumann P, Mentes A, Keki Z, Mathe I, Toth EM	Int J Syst Evol Microbiol	10.1099/ijsem.0.001674	2017	*
Phylogeny	Parapusillimonas granuli gen. nov., sp. nov., isolated from granules from a wastewater-treatment bioreactor.	Kim YJ, Kim MK, Im WT, Srinivasan S, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.009720-0	2009	*

References

#7380

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18079

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70066

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID294568.1 )

* These data were automatically processed and therefore are not curated

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Parapusillimonas granuli DSM 18079

Parapusillimonas granuli DSM 18079

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