Name: Deinococcus radiophilus RBD
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3854

Type strain:

Species: Deinococcus radiophilus

Strain Designation: RBD

Culture col. no.: DSM 20551, ATCC 27603, CCM 2564, NCIB 10648, NCTC 10785, JCM 21311, CCTM La 3467, IAM 14779, IFO 15347, NBRC 15347, NCIMB 10648, NCMB 1878, VKM B-1468

Strain history: IAM 14779 <-- IFO 15347 <-- CCM 2564 <-- N. F. Lewis.

NCBI tax ID(s): 32062 (species)

SI-ID 39082

ATCC 27603, ATCC 27602, ATCC 27604, CCM 2564, NCIB 10648, NCTC 10785, NCIMB 10648, IFO15347, NCMB1878, VKM B-1468, CCRC 12828, CECT 4323, NBRC 15347, BCRC 12828, IAM 14779, JCM 21311, DSM 20551

Section

Deinococcus radiophilus RBD is a mesophilic bacterium that was isolated from irradiated Bombay duck .

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Deinococcales*
	Family	*Deinococcaceae*
	Genus	*Deinococcus*
	Species	**Deinococcus radiophilus**
	Full Scientific Name (LPSN)	Deinococcus radiophilus (ex Lewis 1973) Brooks and Murray 1981

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %92.274

[Ref.: #69480]	Motility	no Confidence in %91.1

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8901]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #8901]

Culture medium growth

[Ref.: #8901]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8901]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8901]			growth	30 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #8901]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.972

[Ref.: #8901]	Murein short key	A21.01
[Ref.: #8901]	Murein types	A3ß L-Orn-Gly₂_-₃

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8901]	Sample type/isolated from	irradiated Bombay duck (Harpodon nehereus)
[Ref.: #8901]	Host species	Harpodon nehereus

[Ref.: #67770]	Sample type/isolated from	Bombay duck (Harpodon nehereus)
[Ref.: #67770]	Host species	Harpodon nehereus
* marker position based on {}

Isolation sources categories

#Host

#Fishes

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8901]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8901]	D.radiophilus 16S rRNA gene	Y11333	1470	ENA	32062 tax ID
[Ref.: #8901]	Deinococcus radiophilus partial 16S rRNA gene, type strain DSM 20551T	LN681570	1458	ENA	32062 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Deinococcus radiophilus ATCC 27603	GCA_003966215	contig	GenBank	32062 tax ID
[Ref.: #66792]	Deinococcus radiophilus strain ATCC 27603	32062.6	wgs	PATRIC	32062 tax ID	*
[Ref.: #66792]	Deinococcus radiophilus ATCC 27603	2895788610	draft	JGI IMG/M	32062 tax ID	*
[Ref.: #66792]	Deinococcus radiophilus ATCC 27603	GCA_020889625	complete	GenBank	32062 tax ID	*
[Ref.: #66792]	Deinococcus radiophilus strain ATCC 27603	32062.7	complete	PATRIC	32062 tax ID	*

[Ref.: #8901]	GC-content	62.0 mol%
[Ref.: #67770]	GC-content	62 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Deinococcus radiophilus strain ATCC 27603 PATRIC: 32062.6
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Deinococcus radiophilus ATCC 27603 NCBI: GCA_020889625.1
[Ref.: #69480]	flagellated	no	95.865	no
[Ref.: #69480]	gram-positive	yes	70.893	no
[Ref.: #69480]	anaerobic	no	97.179	no
[Ref.: #69480]	aerobic	yes	83.992	no
[Ref.: #69480]	halophile	no	69.21	no
[Ref.: #69480]	spore-forming	no	93.204	no
[Ref.: #69480]	motile	no	83.977	no
[Ref.: #69480]	thermophile	no	76.417	yes
[Ref.: #69480]	glucose-util	yes	91.68	no
[Ref.: #69480]	glucose-ferment	no	85.455	no

Availability in culture collections External links

[Ref.: #8901]

Culture collection no.

DSM 20551, ATCC 27603, CCM 2564, NCIB 10648, NCTC 10785, JCM 21311, CCTM La 3467, IAM 14779, IFO 15347, NBRC 15347, NCIMB 10648, NCMB 1878, VKM B-1468

[Ref.: #73364]

SI-ID 39082

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome Sequence of the Radiation-Resistant Bacterium Deinococcus radiophilus ATCC 27603(T).	Maynard CR, MacLea KS	Microbiol Resour Announc	10.1128/MRA.00627-19	2019	*
Phylogeny	Isolation of Deinococcus species from commercial oyster extract.	Chan WF, O'Toole DK	Appl Environ Microbiol	10.1128/AEM.65.2.846-848.1999	1999	*
Enzymology	Two new restriction endonucleases DraII and DraIII from Deinococcus radiophilus.	Grosskopf R, Wolf W, Kessler C	Nucleic Acids Res	10.1093/nar/13.5.1517	1985	*
Enzymology	Isolation and characterisation of DraI, a type II restriction endonuclease recognising a sequence containing only A:T basepairs, and inhibition of its activity by uv irradiation of substrate DNA.	Purvis IJ, Moseley BE	Nucleic Acids Res	10.1093/nar/11.16.5467	1983	*

References

#8901

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20551

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73364

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID39082.1 )

* These data were automatically processed and therefore are not curated

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Deinococcus radiophilus strain ATCC 27603

Deinococcus radiophilus ATCC 27603

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