Deinococcus radiodurans R1, R<SUB>1</SUB> | Type strain | CCUG 27074, DSM 20539, ATCC 13939, CCM 1700, JCM 16871, NCIB 9279, CIP 104750, HAMBI 1924, IFO 15346, LMG 4051, NBRC 15346, NCIMB 9279, UWO 288, VKM B-1422 | BacDiveID:3852

Strain identifier

BacDive ID: 3852

Type strain:

Species: Deinococcus radiodurans

Strain Designation: R1, R₁

Culture col. no.: CCUG 27074, DSM 20539, ATCC 13939, CCM 1700, JCM 16871, NCIB 9279, CIP 104750, HAMBI 1924, IFO 15346, LMG 4051, NBRC 15346, NCIMB 9279, UWO 288, VKM B-1422

Strain history: CIP <- 1996, ATCC <- A.W. Anderson: strain R1 (smooth), Micrococcus radiodurans

NCBI tax ID(s): 1121384 (strain), 1408434 (strain), 1299 (species)

SI-ID 2154

LMG 4051, ATCC 13939, CCM 1700, DSM 20539, IMET 10603, NCIB 9279, CCUG 27074, CIP 104750, NCIMB 9279, IFO15346, VKM B-1422, CCRC 12827, CECT 833, NBRC 15346, HAMBI 1924, BCRC 12827, JCM 16871

Other strains from Deinococcus radiodurans

D. radiodurans Anderson U1, U1, DSM 46620, CCM ...
D. radiodurans STI07259(IMET),
D. radiodurans CCUG 52921
D. radiodurans CCUG 52922
D. radiodurans CCUG 54603
D. radiodurans CCUG 54616
D. radiodurans CCUG 54733
D. radiodurans CCUG 54820
D. radiodurans CCUG 56416
D. radiodurans CCUG 56417

Section

Deinococcus radiodurans R1 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from irradiated ground pork and beef.

coccus-shaped
Gram-positive
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Deinococcales*
	Family	*Deinococcaceae*
	Genus	*Deinococcus*
	Species	**Deinococcus radiodurans**
	Full Scientific Name (LPSN)	Deinococcus radiodurans (ex Raj et al. 1960) Brooks and Murray 1981

Information on morphological and physiological properties Morphology

[Ref.: #122123]	Gram stain	positive

[Ref.: #122123]	Cell shape	coccus-shaped

[Ref.: #122123]	Motility	no

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

CORYNEBACTERIUM AGAR (DSMZ Medium 53)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

MEDIUM 72- for trypto casein soja agar

Culture medium growth

Culture medium composition

expand / minimize

[Ref.: #122123]

Culture medium

CIP Medium 3

[Ref.: #122123]

Culture medium growth

[Ref.: #122123]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #122123]

Culture medium

CIP Medium 72

[Ref.: #122123]

Culture medium growth

[Ref.: #122123]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #8768]			growth	30 °C
[Ref.: #37966]			growth	30 °C
[Ref.: #67770]			growth	30 °C
[Ref.: #122123]			growth	15-30 °C
[Ref.: #122123]		no	growth	45 °C

[Ref.: #8768]	Temperature range	mesophilic
[Ref.: #37966]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #122123]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #122123]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.947

Name of produced compound

restriction endonuclease MraI

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #122123]		NaCl		growth	0	%
[Ref.: #122123]		NaCl	no	growth	2	%
[Ref.: #122123]		NaCl	no	growth	4	%
[Ref.: #122123]		NaCl	no	growth	6	%
[Ref.: #122123]		NaCl	no	growth	8	%
[Ref.: #122123]		NaCl	no	growth	10	%

[Ref.: #8768]	Murein short key	A21.01
[Ref.: #8768]	Murein types	A3ß L-Orn-Gly₂_-₃

Observation

quinones: MK-8, a trace of MK-7

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]		amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-glucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122123]		nitrate ChEBI	-	reduction
[Ref.: #122123]		nitrite ChEBI	-	reduction
[Ref.: #68371]		Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		xylitol ChEBI	-	builds acid from	* from API 50CH acid
		Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #122123]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #122123]		acetoin ChEBI	-

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #68382]		acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #122123]		alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]		alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]		alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]		alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]		alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]		alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]		alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122123]		amylase	-
[Ref.: #122123]		beta-galactosidase	-	3.2.1.23
[Ref.: #68382]		beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]		beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]		beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122123]		caseinase	+	3.4.21.50
[Ref.: #122123]		catalase	+	1.11.1.6
[Ref.: #68382]		cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #122123]		DNase	+
[Ref.: #68382]		esterase (C 4)	+		* from API zym
[Ref.: #68382]		esterase lipase (C 8)	+		* from API zym
[Ref.: #122123]		gelatinase	+
[Ref.: #122123]		lecithinase	-
[Ref.: #68382]		leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]		lipase (C 14)	-		* from API zym
[Ref.: #122123]		lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]		N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]		naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #122123]		ornithine decarboxylase	-	4.1.1.17
[Ref.: #122123]		oxidase	+
[Ref.: #122123]		protease	-
[Ref.: #68382]		trypsin	-	3.4.21.4	* from API zym
[Ref.: #122123]		urease	-	3.5.1.5
[Ref.: #68382]		valine arylamidase	-		* from API zym
		Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #8768]	14693	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122123]	802	not determinedn.d.	-	+	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122123]	8170	-	+	+	+	-	+	-	+	-	+	+	-	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8768]	Sample type/isolated from	irradiated ground pork and beef

[Ref.: #48649]	Sample type/isolated from	Irradiated ground pork and beef

[Ref.: #67770]	Sample type/isolated from	Irradiated ground pork and beef

[Ref.: #122123]	Sample type/isolated from	Food, Irradiated ground pork and beef
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Meat
#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host	#Mammals	#Suidae (Pig,Swine)

What are isolation sources categories?

Global distribution of 16S sequence Y11332 (>99% sequence identity) for Deinococcus radiodurans subclade from Microbeatlas

Aquatic Samples	639
Soil Samples	213
Animal Samples	3917
Plant Samples	212
Total Samples	4981

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8768]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122123]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8768]	D.radiodurans 16S rRNA gene	Y11332	1466	ENA	1299 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	GCA_000687895	contig	GenBank	243230 tax ID
[Ref.: #67770]	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	GCA_000685985	contig	GenBank	243230 tax ID
[Ref.: #66792]	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 ATCC 13939 substr. S1	GCA_020546705	complete	GenBank	243230 tax ID	*
[Ref.: #66792]	Deinococcus radiodurans ATCC 13939	1408434.19	complete	PATRIC	1408434 tax ID	*
[Ref.: #66792]	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 ATCC 13939 substr. R1	GCA_020546805	complete	GenBank	243230 tax ID	*
[Ref.: #66792]	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 ATCC 13939 substr. R6	GCA_020547085	complete	GenBank	243230 tax ID	*

[Ref.: #8768]	GC-content	67.0 mol%
[Ref.: #67770]	GC-content	67 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	69 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Deinococcus radiodurans ATCC 13939 ATCC 13939 NCBI: GCA_020546685.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Deinococcus radiodurans ATCC 13939 ATCC 13939 substr. S1 NCBI: GCA_020546705.1
[Ref.: #69480]	flagellated	no	96.041	no
[Ref.: #69480]	gram-positive	yes	79.501	no
[Ref.: #69480]	anaerobic	no	98.136	no
[Ref.: #69480]	aerobic	yes	86.144	no
[Ref.: #69480]	halophile	no	92.419	no
[Ref.: #69480]	spore-forming	no	93.965	no
[Ref.: #69480]	motile	no	89.837	no
[Ref.: #69480]	thermophile	no	88.069	yes
[Ref.: #69480]	glucose-util	yes	84.694	no
[Ref.: #69480]	glucose-ferment	no	87.435	no

Availability in culture collections External links

Culture collection no.

CCUG 27074, DSM 20539, ATCC 13939, CCM 1700, JCM 16871, NCIB 9279, CIP 104750, HAMBI 1924, IFO 15346, LMG 4051, NBRC 15346, NCIMB 9279, UWO 288, VKM B-1422

SI-ID 2154

*

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Characterization of the Radiation Desiccation Response Regulon of the Radioresistant Bacterium Deinococcus radiodurans by Integrative Genomic Analyses.	Eugenie N, Zivanovic Y, Lelandais G, Coste G, Bouthier de la Tour C, Bentchikou E, Servant P, Confalonieri F	Cells	10.3390/cells10102536	2021	*
Phylogeny	Deinococcus antarcticus sp. nov., isolated from soil.	Dong N, Li HR, Yuan M, Zhang XH, Yu Y	Int J Syst Evol Microbiol	10.1099/ijs.0.066324-0	2014	*
Phylogeny	Deinococcus wulumuqiensis sp. nov., and Deinococcus xibeiensis sp. nov., isolated from radiation-polluted soil.	Wang W, Mao J, Zhang Z, Tang Q, Xie Y, Zhu J, Zhang L, Liu Z, Shi Y, Goodfellow M	Int J Syst Evol Microbiol	10.1099/ijs.0.015917-0	2009	*
Metabolism	Effects of carotenoids from Deinococcus radiodurans on protein oxidation.	Tian B, Sun Z, Shen S, Wang H, Jiao J, Wang L, Hu Y, Hua Y	Lett Appl Microbiol	10.1111/j.1472-765X.2009.02727.x	2009	*
Genetics	Mismatch repair ensures fidelity of replication and recombination in the radioresistant organism Deinococcus radiodurans.	Mennecier S, Coste G, Servant P, Bailone A, Sommer S	Mol Genet Genomics	10.1007/s00438-004-1077-6	2004	*
Metabolism	Protein splicing of the Deinococcus radiodurans strain R1 Snf2 intein.	Southworth MW, Perler FB	J Bacteriol	10.1128/JB.184.22.6387-6388.2002	2002	*
Metabolism	Firm but slippery attachment of Deinococcus geothermalis.	Kolari M, Schmidt U, Kuismanen E, Salkinoja-Salonen MS	J Bacteriol	10.1128/JB.184.9.2473-2480.2002	2002	*
Pathogenicity	Culturomics of Bacteria from Radon-Saturated Water of the World's Oldest Radium Mine.	Kapinusova G, Jani K, Smrhova T, Pajer P, Jarosova I, Suman J, Strejcek M, Uhlik O	Microbiol Spectr	10.1128/spectrum.01995-22	2022	*

References

#8768

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20539

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#37966 ; Curators of the CIP;
#48649 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 27074

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73362

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID2154.1 )

#122123 Collection of Institut Pasteur ; Curators of the CIP; CIP 104750
* These data were automatically processed and therefore are not curated

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