Advenella mimigardefordensis (DSM 17166, LMG 22922, DPN7)

Name: Advenella mimigardefordensis (DSM 17166, LMG 22922, DPN7)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 384

Type strain

Strain Designation DPN7

Culture col. no. DSM 17166 LMG 22922 DPN7

NCBI tax ID(s) 302406

Special Collections DSMZ Literature strains

History <- J. H. Wübbeler, Univ. Münster, Germany; DPN7 <- J. H. Wübbeler;

Links

Advenella mimigardefordensis DPN7 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from matured compost after the sieving process from the compost plant Coerde.

Gram-negative motile ovoid-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 133642

LMG22922,DSM 17166

@ref 20215

Last LPSN update 2026-02-09 11:17:51

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Advenella

Species Advenella mimigardefordensis

Full scientific name Advenella mimigardefordensis (Wübbeler et al. 2006) Gibello et al. 2009

Synonyms (1)

Tetrathiobacter mimigardefordensis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31724	negative	1.5-2 µm	1.5 µm	ovoid-shaped
125438	negative				96.216
125439	negative				95.4

Pigmentation

31724

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
6801	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6801	positive	growth	28	mesophilic
31724	positive	growth	15-40
31724	positive	optimum	30-37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31724	aerobe
125439	aerobe	96.4

Spore formation

31724

Spore formationno

Observation

31724

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31724	17128 ChEBI	adipate	+	carbon source
31724	22599 ChEBI	arabinose	+	carbon source
31724	16947 ChEBI	citrate	+	carbon source
31724	25115 ChEBI	malate	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31724	catalase	+	1.11.1.6
31724	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Biodegradation	#Composting

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
6801	matured compost after the sieving process from the compost plant Coerde	Münster	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence AY880023 (>99% sequence identity) for Advenella mimigardefordensis from Microbeatlas

Aquatic Samples	111
Soil Samples	227
Animal Samples	194
Plant Samples	108
Total Samples	640

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6801	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM52150v1 assembly for Advenella mimigardefordensis DPN7	complete	GCA_000521505	1247726.3	2548877156	1247726	98.73

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6801	Advenella mimigardefordensis DPN7 16S ribosomal RNA gene, partial sequence	AY880023	1502		1247726

GC content

6801

GC-content (mol%)55.1

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Advenella mimigardefordensis DPN7
PATRIC: 1247726.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	96.40	no
125439	gram_stain	BacteriaNetⓘ	negative	95.40	no
125439	motility	BacteriaNetⓘ	yes	81.50	no
125439	spore_formation	BacteriaNetⓘ	no	84.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Advenella mimigardefordensis DPN7 DPN7
NCBI: GCA_000521505.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.22	yes
125438	anaerobic	anaerobicⓘ	no	99.13	yes
125438	aerobic	aerobicⓘ	yes	89.59	yes
125438	spore-forming	spore-formingⓘ	no	85.51	yes
125438	thermophilic	thermophileⓘ	no	99.00	no
125438	flagellated	motile2+ⓘ	yes	51.20	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	New Multidrug Efflux Systems in a Microcystin-Degrading Bacterium Blastomonas fulva and Its Genomic Feature.	Jin L, Cui C, Zhang C, Ko SR, Li T, Jin FJ, Ahn CY, Oh HM, Lee HG.	Int J Mol Sci	10.3390/ijms231810856	2022
Metabolism	Dihydrolipoamide dehydrogenases of Advenella mimigardefordensis and Ralstonia eutropha catalyze cleavage of 3,3'-dithiodipropionic acid into 3-mercaptopropionic acid.	Wubbeler JH, Raberg M, Brandt U, Steinbuchel A.	Appl Environ Microbiol	10.1128/aem.01706-10	2010
Phylogeny	Reclassification of the members of the genus Tetrathiobacter Ghosh et al. 2005 to the genus Advenella Coenye et al. 2005.	Gibello A, Vela AI, Martin M, Barra-Caracciolo A, Grenni P, Fernandez-Garayzabal JF	Int J Syst Evol Microbiol	10.1099/ijs.0.007443-0	2009
Metabolism	Novel pathway for catabolism of the organic sulfur compound 3,3'-dithiodipropionic acid via 3-mercaptopropionic acid and 3-Sulfinopropionic acid to propionyl-coenzyme A by the aerobic bacterium Tetrathiobacter mimigardefordensis strain DPN7.	Wubbeler JH, Bruland N, Kretschmer K, Steinbuchel A	Appl Environ Microbiol	10.1128/AEM.00422-08	2008
Phylogeny	Advenella alkanexedens sp. nov., an alkane-degrading bacterium isolated from biogas slurry samples.	Wang H, Zhou S, Wang Y, Kong D, Guo X, Zhu J, Dong W, Ruan Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.000811	2015
Phylogeny	Description of Pelistega indica sp. nov., isolated from human gut.	Prakash O, Munot H, Nimonkar Y, Sharma M, Kumbhare S, Shouche YS	Int J Syst Evol Microbiol	10.1099/ijs.0.059782-0	2014
Phylogeny	Tetrathiobacter mimigardefordensis sp. nov., isolated from compost, a betaproteobacterium capable of utilizing the organic disulfide 3,3'-dithiodipropionic acid.	Wubbeler JH, Lutke-Eversloh T, Van Trappen S, Vandamme P, Steinbuchel A	Int J Syst Evol Microbiol	10.1099/ijs.0.64126-0	2006

References

#6801	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17166
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28000	IJSEM 1305 2006 ( DOI 10.1099/ijs.0.64126-0 , PubMed 16738107 )
#31724	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28000
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Advenella mimigardefordensis (DSM 17166, LMG 22922, DPN7)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000521505

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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