Name: Advenella mimigardefordensis DPN7
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 384

Type strain:

Species: Advenella mimigardefordensis

Strain Designation: DPN7

Culture col. no.: DSM 17166, LMG 22922

Strain history: <- J. H. Wübbeler, Univ. Münster, Germany; DPN7 <- J. H. Wübbeler;

NCBI tax ID(s): 302406 (species)

SI-ID 133642

LMG22922, DSM 17166

Special Collections

Section

Advenella mimigardefordensis DPN7 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from matured compost after the sieving process from the compost plant Coerde.

Gram-negative
motile
ovoid-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Alcaligenaceae*
	Genus	*Advenella*
	Species	**Advenella mimigardefordensis**
	Full Scientific Name (LPSN)	Advenella mimigardefordensis (Wübbeler et al. 2006) Gibello et al. 2009

Synonym

Tetrathiobacter mimigardefordensis

Information on morphological and physiological properties Morphology

[Ref.: #31724]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %96.216

[Ref.: #31724]	Cell length	1.5-2 µm

[Ref.: #31724]	Cell width	1.5 µm

[Ref.: #31724]	Cell shape	ovoid-shaped

[Ref.: #31724]	Motility	yes

[Ref.: #31724]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6801]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #6801]

Culture medium growth

[Ref.: #6801]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6801]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6801]	growth	28 °C
[Ref.: #31724]	growth	15-40 °C
[Ref.: #31724]	optimum	30-37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31724]

Oxygen tolerance

aerobe

[Ref.: #31724]

Ability of spore formation

[Ref.: #31724]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31724]	adipate ChEBI	+	carbon source
[Ref.: #31724]	arabinose ChEBI	+	carbon source
[Ref.: #31724]	citrate ChEBI	+	carbon source
[Ref.: #31724]	malate ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31724]		catalase	+	1.11.1.6
[Ref.: #31724]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6801]	Sample type/isolated from	matured compost after the sieving process from the compost plant Coerde
[Ref.: #6801]	Geographic location (country and/or sea, region)	Münster
[Ref.: #6801]	Country	Germany
[Ref.: #6801]	Country ISO 3 Code	DEU
[Ref.: #6801]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered

#Biodegradation

#Composting

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY880023 (>99% sequence identity) for Advenella mimigardefordensis from Microbeatlas

Aquatic Samples	111
Soil Samples	227
Animal Samples	194
Plant Samples	108
Total Samples	640

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6801]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6801]	Advenella mimigardefordensis DPN7 16S ribosomal RNA gene, partial sequence	AY880023	1502	GenBank ENA	1247726 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Advenella mimigardefordensis DPN7	GCA_000521505	complete	GenBank ENA	1247726 tax ID	*
[Ref.: #66792]	Advenella mimigardefordensis DPN7	1247726.3	complete	PATRIC	1247726 tax ID	*
[Ref.: #66792]	Advenella mimigardefordensis DPN7	1247726.11	plasmid	PATRIC	1247726 tax ID	*
[Ref.: #66792]	Advenella mimigardefordensis DPN7	2548877156	complete	JGI IMG/M	1247726 tax ID	*

[Ref.: #6801]

GC-content

55.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Advenella mimigardefordensis DPN7 DPN7 NCBI: GCA_000521505.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.216	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	99.125	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.594	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	85.51	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	99	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	51.195	no

Availability in culture collections External links

[Ref.: #6801]

Culture collection no.

DSM 17166, LMG 22922

[Ref.: #70064]

SI-ID 133642

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Advenella alkanexedens sp. nov., an alkane-degrading bacterium isolated from biogas slurry samples.	Wang H, Zhou S, Wang Y, Kong D, Guo X, Zhu J, Dong W, Ruan Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.000811	2015	*
Phylogeny	Description of Pelistega indica sp. nov., isolated from human gut.	Prakash O, Munot H, Nimonkar Y, Sharma M, Kumbhare S, Shouche YS	Int J Syst Evol Microbiol	10.1099/ijs.0.059782-0	2014	*
Phylogeny	Reclassification of the members of the genus Tetrathiobacter Ghosh et al. 2005 to the genus Advenella Coenye et al. 2005.	Gibello A, Vela AI, Martin M, Barra-Caracciolo A, Grenni P, Fernandez-Garayzabal JF	Int J Syst Evol Microbiol	10.1099/ijs.0.007443-0	2009	*
Metabolism	Novel pathway for catabolism of the organic sulfur compound 3,3'-dithiodipropionic acid via 3-mercaptopropionic acid and 3-Sulfinopropionic acid to propionyl-coenzyme A by the aerobic bacterium Tetrathiobacter mimigardefordensis strain DPN7.	Wubbeler JH, Bruland N, Kretschmer K, Steinbuchel A	Appl Environ Microbiol	10.1128/AEM.00422-08	2008	*
Phylogeny	Tetrathiobacter mimigardefordensis sp. nov., isolated from compost, a betaproteobacterium capable of utilizing the organic disulfide 3,3'-dithiodipropionic acid.	Wubbeler JH, Lutke-Eversloh T, Van Trappen S, Vandamme P, Steinbuchel A	Int J Syst Evol Microbiol	10.1099/ijs.0.64126-0	2006	*

References

#6801

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17166

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31724

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28000 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#70064

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID133642.1 )

#28000

IJSEM 1305 2006 ( DOI 10.1099/ijs.0.64126-0 , PubMed 16738107 )

* These data were automatically processed and therefore are not curated

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Advenella mimigardefordensis DPN7 DPN7

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