Name: Fibrisoma limi DSM 22564
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 3836

Type strain:

Species: Fibrisoma limi

Culture col. no.: DSM 22564, CCUG 58137, BUZ 3

Strain history: <- H. Bagheri, Univ. Zurich, Switzerland; BUZ 3 <- M. Filippini

NCBI tax ID(s): 1185876 (strain), 663275 (species)

SI-ID 406396

DSM 22564, CCUG 58137

Section

Fibrisoma limi DSM 22564 is an aerobe bacterium that was isolated from mud from tidal flats.

aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Spirosomataceae*
	Genus	*Fibrisoma*
	Species	**Fibrisoma limi**
	Full Scientific Name (LPSN)	Fibrisoma limi Filippini et al. 2011

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16402]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #16402]

Culture medium growth

[Ref.: #16402]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16402]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16402]			growth	28 °C
[Ref.: #61605]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #61605]

Oxygen tolerance

aerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16402]	Sample type/isolated from	mud from tidal flats
[Ref.: #16402]	Geographic location (country and/or sea, region)	North Sea coast, Fedderwardersiel (53° 35' 59'' N, 8° 21' 23'' E, elevation 0 m)
[Ref.: #16402]	Country	Germany
[Ref.: #16402]	Country ISO 3 Code	DEU
[Ref.: #16402]	Continent	Europe
[Ref.: #16402]	Geographic location	53.5997°/8.3564°

[Ref.: #61605]	Sample type/isolated from	Mud,tidal flats
[Ref.: #61605]	Sampling date	2008
[Ref.: #61605]	Geographic location (country and/or sea, region)	North Sea coast,Fedderwardersiel
[Ref.: #61605]	Country	Germany
[Ref.: #61605]	Country ISO 3 Code	DEU
[Ref.: #61605]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Terrestrial	#Tidal flat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GQ355622 (>99% sequence identity) for Fibrisoma limi subclade from Microbeatlas

Aquatic Samples	504
Soil Samples	241
Animal Samples	2501
Plant Samples	79
Total Samples	3325

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16402]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16402]	Fibrisoma limi strain BUZ 3 16S ribosomal RNA gene, partial sequence	GQ355622	1430	GenBank ENA	1185876 tax ID

[Ref.: #16402]

GC-content

52.0 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #16402]

Culture collection no.

DSM 22564, CCUG 58137, BUZ 3

[Ref.: #73346]

SI-ID 406396

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Fibrisoma montanum sp. nov., isolated from soil of Mountain Danxia, China.	Huang Y, Niu Y, Wang G, Zheng S	Arch Microbiol	10.1007/s00203-019-01741-w	2019	*
Genetics	Genome sequence of the filamentous bacterium Fibrisoma limi BUZ 3T.	Filippini M, Qi W, Jaenicke S, Goesmann A, Smits TH, Bagheri HC	J Bacteriol	10.1128/JB.00869-12	2012	*
Phylogeny	Fibrisoma limi gen. nov., sp. nov., a filamentous bacterium isolated from tidal flats.	Filippini M, Kaech A, Ziegler U, Bagheri HC	Int J Syst Evol Microbiol	10.1099/ijs.0.025395-0	2010	*
	Antagonistic interactions between filamentous heterotrophs and the cyanobacterium Nostoc muscorum.	Svercel M, Saladin B, van Moorsel SJ, Wolf S, Bagheri HC	BMC Res Notes	10.1186/1756-0500-4-357	2011	*

References

#16402

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22564

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#61605 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 58137

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#73346

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406396.1 )

* These data were automatically processed and therefore are not curated

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