Name: Rhodonellum ikkaensis GCM 70
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 3831

Type strain:

Species: Rhodonellum ikkaensis

Strain Designation: GCM 70

Culture col. no.: DSM 17997

Strain history: <- P. Stougaard,Denmark; GCM 70 <- M. Schmidt

NCBI tax ID(s): 336829 (species)

Special Collections

DSMZ

Section

Rhodonellum ikkaensis GCM 70 is a bacterium that was isolated from Ikaite tufa columns.

16S sequence
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

[Ref.: #7225]	Domain	Bacteria
[Ref.: #7225]	Phylum	Bacteroidetes
[Ref.: #7225]	Class	Cytophagia
[Ref.: #7225]	Order	Cytophagales
[Ref.: #7225]	Family	Cyclobacteriaceae
[Ref.: #7225]	Genus	Rhodonellum
[Ref.: #7225]	Species	Rhodonellum ikkaensis
[Ref.: #7225]	Full Scientific Name	Rhodonellum ikkaensis
[Ref.: #7225]	Strain Designation	GCM 70
[Ref.: #7225]	Type strain

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %94.989

[Ref.: #69480]	Motility	no Confidence in %90.602

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7225]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7225]

Culture medium growth

[Ref.: #7225]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7225]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7225]			growth	15 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7225]	Sample type/isolated from	Ikaite tufa columns
[Ref.: #7225]	Geographic location (country and/or sea, region)	Ikka Fjord
[Ref.: #7225]	Country	Greenland
[Ref.: #7225]	Country ISO 3 Code	GRL
[Ref.: #7225]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Geologic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ112663 (>99% sequence identity) for Rhodonellum from Microbeatlas

Aquatic Samples	641
Soil Samples	161
Animal Samples	175
Plant Samples	7
Total Samples	984

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7225]	Rhodonellum ikkaensis strain GCM70 16S ribosomal RNA gene, partial sequence	DQ112663	1353	GenBank ENA	336829 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhodonellum ikkaensis DSM 17997	GCA_900107465	scaffold	GenBank ENA	336829 tax ID	*
[Ref.: #66792]	Rhodonellum ikkaensis strain DSM 17997	336829.5	wgs	PATRIC	336829 tax ID	*
[Ref.: #66792]	Rhodonellum ikkaensis DSM 17997	2693429890	draft	JGI IMG/M	336829 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rhodonellum ikkaensis strain DSM 17997 PATRIC: 336829.5
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhodonellum ikkaensis DSM 17997 NCBI: GCA_900107465.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	94.989	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.456	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	86.471	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	85.938	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.972	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90.602	no

Availability in culture collections External links

[Ref.: #7225]

Culture collection no.

DSM 17997

References

#7225

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17997

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Rhodonellum ikkaensis strain DSM 17997

Rhodonellum ikkaensis DSM 17997

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