Name: Pontibacter actiniarum DSM 19842
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 3830

Type strain:

Species: Pontibacter actiniarum

Culture col. no.: DSM 19842, KCTC 12367, KMM 6156, LMG 23027

Strain history: <- O. I. Nedashkovskaya, Pacific Inst. Bioorg. Chem., RAS, Vladivostok; KMM 6156 <- L. S. Shevchenko

NCBI tax ID(s): 709015 (strain), 323450 (species)

SI-ID 138409

LMG 23027, KCTC 12367, DSM 19842

Special Collections

DSMZ
KCTC

Section

Pontibacter actiniarum DSM 19842 is a bacterium that was isolated from unidentified actinians.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Pontibacter*
	Species	**Pontibacter actiniarum**
	Full Scientific Name (LPSN)	Pontibacter actiniarum Nedashkovskaya et al. 2005

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #66793]

Caption:

electron microscopic image

[Ref.: #66793]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8128]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #8128]

Culture medium growth

[Ref.: #8128]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8128]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8128]			growth	28 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8128]	Sample type/isolated from	unidentified actinians
[Ref.: #8128]	Geographic location (country and/or sea, region)	Pacific Ocean, Rudnaya Bay
[Ref.: #8128]	Country	Russia
[Ref.: #8128]	Country ISO 3 Code	RUS
[Ref.: #8128]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Cnidaria (Corals)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY989908 (>99% sequence identity) for Pontibacter actiniarum subclade from Microbeatlas

Aquatic Samples	23
Soil Samples	9
Animal Samples	6
Plant Samples	1
Total Samples	39

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8128]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8128]	Pontibacter actiniarum strain KMM 6156 16S ribosomal RNA gene, partial sequence	AY989908	1435	GenBank ENA	709015 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pontibacter actiniarum DSM 19842	GCA_003585765	complete	GenBank ENA	323450 tax ID	*
[Ref.: #66792]	Pontibacter actiniarum DSM 19842	GCA_000472485	contig	GenBank ENA	709015 tax ID	*
[Ref.: #66792]	Pontibacter actiniarum DSM 19842	709015.3	wgs	PATRIC	709015 tax ID	*
[Ref.: #66792]	Pontibacter actiniarum strain DSM 19842	323450.3	complete	PATRIC	323450 tax ID	*
[Ref.: #66792]	Pontibacter actiniarum DSM 19842	2834962495	complete	JGI IMG/M	709015 tax ID	*
[Ref.: #66792]	Pontibacter actiniarum DSM 19842	2502545039	draft	JGI IMG/M	709015 tax ID	*

[Ref.: #8128]	GC-content	48.7 mol%
[Ref.: #8128]	GC-content	53.1 mol%	sequence analysis

Availability in culture collections External links

[Ref.: #8128]

Culture collection no.

DSM 19842, KCTC 12367, KMM 6156, LMG 23027

[Ref.: #73341]

SI-ID 138409

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pontibacter flavimaris sp. nov., of the family Hymenobacteraceae, isolated from marine sediment.	Liu D, Xiong Q, Zhao J, Fang Z, Zhang G	Int J Syst Evol Microbiol	10.1099/ijsem.0.004958	2021	*
Phylogeny	Pontibacter oryzae sp. nov., a carotenoid-producing species isolated from a rice paddy field.	Chhetri G, Kim J, Kim H, Kim I, Seo T	Antonie Van Leeuwenhoek	10.1007/s10482-019-01298-0	2019	*
Phylogeny	Erythrobacter odishensis sp. nov. and Pontibacter odishensis sp. nov. isolated from dry soil of a solar saltern.	Subhash Y, Tushar L, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijs.0.052183-0	2013	*
Phylogeny	Pontibacter korlensis sp. nov., isolated from the desert of Xinjiang, China.	Zhang L, Zhang Q, Luo X, Tang Y, Dai J, Li Y, Wang Y, Chen G, Fang C	Int J Syst Evol Microbiol	10.1099/ijs.0.65667-0	2008	*
Phylogeny	Effluviibacter roseus gen. nov., sp. nov., isolated from muddy water, belonging to the family "Flexibacteraceae".	Suresh K, Mayilraj S, Chakrabarti T	Int J Syst Evol Microbiol	10.1099/ijs.0.64144-0	2006	*
Phylogeny	Pontibacter actiniarum gen. nov., sp. nov., a novel member of the phylum 'Bacteroidetes', and proposal of Reichenbachiella gen. nov. as a replacement for the illegitimate prokaryotic generic name Reichenbachia Nedashkovskaya et al. 2003.	Nedashkovskaya OI, Kim SB, Suzuki M, Shevchenko LS, Lee MS, Lee KH, Park MS, Frolova GM, Oh HW, Bae KS, Park HY, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/ijs.0.63819-0	2005	*

References

#8128

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19842

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#73341

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID138409.1 )

* These data were automatically processed and therefore are not curated

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