Bordetella petrii (DSM 12804, CCUG 43448, CIP 107267)

Name: Bordetella petrii (DSM 12804, CCUG 43448, CIP 107267)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 382

Type strain

Strain Designation Se-1111R

Culture col. no. DSM 12804 CCUG 43448 CIP 107267 ATCC BAA-461 CCM 7166 1 more

NCBI tax ID(s) 340100 94624

Special Collections DSMZ CCUG CIP Literature strains

History <- F. von Wintzingerode, Techn. Univ. Berlin; Se-1111R CIP <- 2001, CCUG <- F. von Wintzingerode, Techn. Univ. Berlin, Germany: strain Se-1111R

Links

Bordetella petrii Se-1111R is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from bioreactor culture enriched from river sediment.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 49365

DSM 12804,CCUG 43448,CIP 107267,ATCC BAA-461,CCM 7166,LMG 26168

@ref 20215

Last LPSN update 2026-02-09 11:17:51

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Bordetella

Species Bordetella petrii

Full scientific name Bordetella petrii Von Wintzingerode et al. 2001

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
23282	negative	1.0-2.8 µm	0.4-0.7 µm	rod-shaped
121788	negative			rod-shaped
125439	negative				98.7
125438	negative				97.417

Colony morphology

@ref	Incubation period	Hemolysis ability
4829	1-2 days
121788		1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
4829	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
4829	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
4829	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
23282	MacConkey agar
33725	MEDIUM 6 - Columbia agar with 10 % horse blood		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
121788	CIP Medium 6	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
4829	positive	growth	30
4829	positive	growth	37
23282	positive	growth	37
23282	positive	growth	30
33725	positive	growth	37
55867	positive	growth	37
121788	positive	growth	25-45
121788	negative	growth	5
121788	negative	growth	15

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
23282	aerobe
23282	anaerobe
55867	aerobe
121788	obligate aerobe
125439	obligate aerobe	95.6

Spore formation

@ref	Spore formation	Confidence
23282
125439		98.9
125438		90.188

Halophily

@ref	Salt	Growth	Tested relation	Concentration
121788	NaCl	positive	growth	2-4 %
121788	NaCl		growth	0 %
121788	NaCl		growth	6 %
121788	NaCl		growth	8 %
121788	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23282	17128 ChEBI	adipate	+	assimilation
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
23282	27613 ChEBI	amygdalin	-	assimilation
23282	22599 ChEBI	arabinose	-	anaerobic growth
23282	18305 ChEBI	arbutin	-	assimilation
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
23282	17057 ChEBI	cellobiose	-	anaerobic growth
23282	17057 ChEBI	cellobiose	-	assimilation
23282	16947 ChEBI	citrate	+	assimilation
121788	16947 ChEBI	citrate	+	carbon source
23282	17108 ChEBI	D-arabinose	-	assimilation
23282	8391 ChEBI	D-gluconate	+	assimilation
23282	17634 ChEBI	D-glucose	-	assimilation
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
23282	65327 ChEBI	D-xylose	-	assimilation
23282	27689 ChEBI	decanoate	-	assimilation
23282	17113 ChEBI	erythritol	-	assimilation
23282	4853 ChEBI	esculin	-	hydrolysis
121788	4853 ChEBI	esculin	-	hydrolysis
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
23282	5291 ChEBI	gelatin	-	hydrolysis
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
23282	28066 ChEBI	gentiobiose	-	assimilation
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
23282	17234 ChEBI	glucose	-	anaerobic growth
23282	17754 ChEBI	glycerol	-	anaerobic growth
23282	17754 ChEBI	glycerol	-	assimilation
23282	28087 ChEBI	glycogen	-	assimilation
121788	606565 ChEBI	hippurate	+	hydrolysis
23282	15443 ChEBI	inulin	-	assimilation
23282	30849 ChEBI	L-arabinose	-	assimilation
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
23282	15589 ChEBI	L-malate	+	assimilation
23282	65328 ChEBI	L-xylose	-	assimilation
23282	17716 ChEBI	lactose	-	anaerobic growth
23282	17716 ChEBI	lactose	-	assimilation
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
121788	15792 ChEBI	malonate	-	assimilation
23282	17306 ChEBI	maltose	-	anaerobic growth
23282	17306 ChEBI	maltose	-	assimilation
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
23282	29864 ChEBI	mannitol	-	anaerobic growth
23282	29864 ChEBI	mannitol	-	assimilation
23282	37684 ChEBI	mannose	-	anaerobic growth
23282	37684 ChEBI	mannose	-	assimilation
23282	6731 ChEBI	melezitose	-	anaerobic growth
23282	6731 ChEBI	melezitose	-	assimilation
23282	28053 ChEBI	melibiose	-	assimilation
23282	320061 ChEBI	methyl alpha-D-glucopyranoside	-	assimilation
23282	74863 ChEBI	methyl beta-D-xylopyranoside	-	assimilation
23282	17268 ChEBI	myo-inositol	-	assimilation
23282	506227 ChEBI	N-acetylglucosamine	-	assimilation
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
23282	17632 ChEBI	nitrate	+	degradation
121788	17632 ChEBI	nitrate	+	builds gas from
121788	17632 ChEBI	nitrate	+	reduction
121788	17632 ChEBI	nitrate	+	respiration
121788	16301 ChEBI	nitrite	+	builds gas from
121788	16301 ChEBI	nitrite	+	reduction
23282	18401 ChEBI	phenylacetate	-	assimilation
23282	16634 ChEBI	raffinose	-	assimilation
23282	26546 ChEBI	rhamnose	-	assimilation
23282	15963 ChEBI	ribitol	-	assimilation
23282	33942 ChEBI	ribose	-	assimilation
23282	17814 ChEBI	salicin	-	anaerobic growth
23282	17814 ChEBI	salicin	-	assimilation
23282	30911 ChEBI	sorbitol	-	assimilation
23282	28017 ChEBI	starch	-	assimilation
23282	17992 ChEBI	sucrose	-	anaerobic growth
23282	17992 ChEBI	sucrose	-	assimilation
23282	78021 ChEBI	tetrazolium	+	reduction
23282	27082 ChEBI	trehalose	-	anaerobic growth
23282	27082 ChEBI	trehalose	-	assimilation
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
23282	17151 ChEBI	xylitol	-	assimilation
23282	18222 ChEBI	xylose	-	anaerobic growth

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
121788	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
23282	15688 ChEBI	acetoin
23282	35581 ChEBI	indole
68369	35581 ChEBI	indole	from API 20NE
121788	35581 ChEBI	indole
23282	16301 ChEBI	nitrite

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test	Voges-proskauer-test	Methylred-test
121788	15688 ChEBI	acetoin		-
121788	17234 ChEBI	glucose			-
68369	35581 ChEBI	indole	-			from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
121788	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
121788	amylase	-
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
121788	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
121788	caseinase	-	3.4.21.50
4829	catalase	+	1.11.1.6
23282	catalase	+	1.11.1.6
121788	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
23282	cytochrome oxidase	+	1.9.3.1
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
4829	cytochrome-c oxidase	+	1.9.3.1
121788	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
121788	gamma-glutamyltransferase	+	2.3.2.2
121788	gelatinase	-
68369	gelatinase	-		from API 20NE
121788	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
121788	lipase	-
68382	lipase (C 14)	-		from API zym
121788	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121788	ornithine decarboxylase	-	4.1.1.17
121788	oxidase	+
121788	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	-	3.4.21.4	from API zym
121788	tryptophan deaminase	-
121788	tween esterase	-
23282	urease	-	3.5.1.5
121788	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	biotin biosynthesis	100	4 of 4
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	cardiolipin biosynthesis	100	7 of 7
66794	ketogluconate metabolism	100	8 of 8
66794	ethanol fermentation	100	2 of 2
66794	acetate fermentation	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	resorcinol degradation	100	2 of 2
66794	valine metabolism	100	9 of 9
66794	quinate degradation	100	2 of 2
66794	lipoate biosynthesis	100	5 of 5
66794	cyanate degradation	100	3 of 3
66794	ribulose monophosphate pathway	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	ubiquinone biosynthesis	100	7 of 7
66794	lactate fermentation	100	4 of 4
66794	suberin monomers biosynthesis	100	2 of 2
66794	taurine degradation	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	sulfopterin metabolism	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	denitrification	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	leucine metabolism	92.31	12 of 13
66794	proline metabolism	90.91	10 of 11
66794	starch degradation	90	9 of 10
66794	Entner Doudoroff pathway	90	9 of 10
66794	threonine metabolism	90	9 of 10
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	4-hydroxymandelate degradation	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	gluconeogenesis	87.5	7 of 8
66794	isoleucine metabolism	87.5	7 of 8
66794	citric acid cycle	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	photosynthesis	85.71	12 of 14
66794	vitamin B1 metabolism	84.62	11 of 13
66794	phenylalanine metabolism	84.62	11 of 13
66794	degradation of aromatic, nitrogen containing compounds	83.33	10 of 12
66794	NAD metabolism	83.33	15 of 18
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	vitamin B6 metabolism	81.82	9 of 11
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	gallate degradation	80	4 of 5
66794	phenol degradation	80	16 of 20
66794	glycogen metabolism	80	4 of 5
66794	degradation of sugar acids	80	20 of 25
66794	peptidoglycan biosynthesis	80	12 of 15
66794	3-phenylpropionate degradation	80	12 of 15
66794	3-chlorocatechol degradation	80	4 of 5
66794	glutathione metabolism	78.57	11 of 14
66794	heme metabolism	78.57	11 of 14
66794	d-mannose degradation	77.78	7 of 9
66794	nitrate assimilation	77.78	7 of 9
66794	lysine metabolism	76.19	32 of 42
66794	alanine metabolism	75.86	22 of 29
66794	arginine metabolism	75	18 of 24
66794	toluene degradation	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	non-pathway related	73.68	28 of 38
66794	methionine metabolism	73.08	19 of 26
66794	pentose phosphate pathway	72.73	8 of 11
66794	cysteine metabolism	72.22	13 of 18
66794	tyrosine metabolism	71.43	10 of 14
66794	purine metabolism	71.28	67 of 94
66794	propionate fermentation	70	7 of 10
66794	sulfate reduction	69.23	9 of 13
66794	urea cycle	69.23	9 of 13
66794	tryptophan metabolism	68.42	26 of 38
66794	lipid metabolism	67.74	21 of 31
66794	flavin biosynthesis	66.67	10 of 15
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	IAA biosynthesis	66.67	2 of 3
66794	sulfoquinovose degradation	66.67	2 of 3
66794	allantoin degradation	66.67	6 of 9
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	octane oxidation	66.67	2 of 3
66794	metabolism of disaccharids	63.64	7 of 11
66794	oxidative phosphorylation	62.64	57 of 91
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	histidine metabolism	62.07	18 of 29
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	vitamin K metabolism	60	3 of 5
66794	hydrogen production	60	3 of 5
66794	glycolysis	58.82	10 of 17
66794	pyrimidine metabolism	57.78	26 of 45
66794	degradation of pentoses	57.14	16 of 28
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	carnitine metabolism	50	4 of 8
66794	glycine metabolism	50	5 of 10
66794	cyclohexanol degradation	50	2 of 4
66794	pantothenate biosynthesis	50	3 of 6
66794	selenocysteine biosynthesis	50	3 of 6
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	degradation of hexoses	44.44	8 of 18
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	polyamine pathway	43.48	10 of 23
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	bile acid biosynthesis, neutral pathway	41.18	7 of 17
66794	carotenoid biosynthesis	40.91	9 of 22
66794	factor 420 biosynthesis	40	2 of 5
66794	creatinine degradation	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	d-xylose degradation	36.36	4 of 11
66794	enterobactin biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	arachidonic acid metabolism	33.33	6 of 18
66794	ascorbate metabolism	31.82	7 of 22
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	mevalonate metabolism	28.57	2 of 7
66794	cholesterol biosynthesis	27.27	3 of 11
66794	daunorubicin biosynthesis	22.22	2 of 9
66794	vitamin B12 metabolism	20.59	7 of 34

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121788	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
4829	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+/-	+	+	+	-	not determinedn.d.
4829	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	+	+	-	not determinedn.d.
4829	+	-	-	-	-	-	-	-	-	-	-	+/-	-	-	+	-	+	+	+	-	+
4829	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+/-	+	+	+	+/-	+

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
121788	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	+	+	+	-	+	+	-	-	-	-	-	-	+	-	+	-	-	+	-	+	-	-	-	-	-	-	-	+	-	-	-	+	+	+	+	-	-	-	+	+	+	+	+	+	+	+	+	-	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Bioreactor	-
#Environmental	#Aquatic	#River (Creek)
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
4829	bioreactor culture enriched from river sediment		Jena, Saale	Germany	DEU	Europe
55867	River sediment derived anaerobic bioreactor	1998	Saale near Jena	Germany	DEU	Europe
121788	Environment, River sediment derived anaerobic bioreactor			Sweden	SWE	Europe	1996

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
4829	yes, in single cases	1	Risk group (German classification) According to TRBA 466
121788		2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM6720v1 assembly for Bordetella petrii DSM 12804	complete	GCA_000067205	340100.3	641228479	94624	96.95

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Bordetella petrii 16S rRNA gene, strain DSM 12804	AJ249861	1496		94624
124043	Bordetella petrii strain DSM 12804 16S ribosomal RNA gene, partial sequence.	MT103109	1287		94624

GC content

@ref	GC-content (mol%)	Method
4829	63.8
23282	63.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bordetella petrii DSM 12804
PATRIC: 340100.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.90	no
125439	motility	BacteriaNetⓘ	yes	82.80	no
125439	gram_stain	BacteriaNetⓘ	negative	98.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bordetella petrii DSM 12804
PATRIC: 340100.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.42	yes
125438	anaerobic	anaerobicⓘ	no	97.38	no
125438	spore-forming	spore-formingⓘ	no	90.19	yes
125438	aerobic	aerobicⓘ	yes	89.07	no
125438	thermophilic	thermophileⓘ	no	97.28	no
125438	flagellated	motile2+ⓘ	yes	85.84	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Genomic, morphological, and biochemical analyses of a multi-metal resistant but multi-drug susceptible strain of Bordetella petrii from hospital soil.	Halder U, Biswas R, Kabiraj A, Deora R, Let M, Roy RK, Chitikineni A, Majhi K, Sarkar S, Dutta B, Laha A, Datta A, Khan D, Varshney RK, Saha D, Chattopadhyay S, Bandopadhyay R.	Sci Rep	10.1038/s41598-022-12435-7	2022
	Draft Genome Assembly of Stutzerimonas sp. Strain S1 and Achromobacter spanius Strain S4, Two Syringol-Metabolizing Bacteria Isolated from Compost Soil.	Brink DP, Larsson EM, Garcia-Hidalgo J, Helgadottir H, Gorwa-Grauslund MF.	Microbiol Resour Announc	10.1128/mra.01150-22	2023
Genetics	Genomic and environmental controls on Castellaniella biogeography in an anthropogenically disturbed subsurface.	Goff JL, Szink EG, Durrence KL, Lui LM, Nielsen TN, Kuehl JV, Hunt KA, Chandonia JM, Huang J, Thorgersen MP, Poole FL, Stahl DA, Chakraborty R, Deutschbauer AM, Arkin AP, Adams MWW.	Environ Microbiome	10.1186/s40793-024-00570-9	2024
Genetics	Evolution End Classification of tfd Gene Clusters Mediating Bacterial Degradation of 2,4-Dichlorophenoxyacetic Acid (2,4-D).	Iasakov T.	Int J Mol Sci	10.3390/ijms241814370	2023
Genetics	Comparative Genomic Analysis of the Regulation of Aromatic Metabolism in Betaproteobacteria.	Suvorova IA, Gelfand MS.	Front Microbiol	10.3389/fmicb.2019.00642	2019
Enzymology	Septic arthritis and osteomyelitis due to Bordetella petrii.	Nogi M, Bankowski MJ, Pien FD.	J Clin Microbiol	10.1128/jcm.02794-14	2015
	Identification of BvgA-Dependent and BvgA-Independent Small RNAs (sRNAs) in Bordetella pertussis Using the Prokaryotic sRNA Prediction Toolkit ANNOgesic.	Moon K, Sim M, Tai CH, Yoo K, Merzbacher C, Yu SH, Kim DD, Lee J, Forstner KU, Chen Q, Stibitz S, Knipling LG, Hinton DM.	Microbiol Spectr	10.1128/spectrum.00044-21	2021
Transcriptome	Transcriptional and Antagonistic Responses of Biocontrol Strain Lysobacter enzymogenes OH11 to the Plant Pathogenic Oomycete Pythium aphanidermatum.	Zhao Y, Qian G, Chen Y, Du L, Liu F.	Front Microbiol	10.3389/fmicb.2017.01025	2017
Genetics	IslandCafe: Compositional Anomaly and Feature Enrichment Assessment for Delineation of Genomic Islands.	Jani M, Azad RK.	G3 (Bethesda)	10.1534/g3.119.400562	2019
	Succession of the microbial community during the process of mechanical and biological pretreatment coupled with a bio-filter for removal of VOCs derived from domestic waste: a field study.	Hou J, Yu C, Meng F, He X, Wang Y, Chen W, Li M.	RSC Adv	10.1039/d1ra05962a	2021
Metabolism	Strategy for successful expression of the Pseudomonas putida nitrile hydratase activator P14K in Escherichia coli.	Liu Y, Cui W, Fang Y, Yu Y, Cui Y, Xia Y, Kobayashi M, Zhou Z.	BMC Biotechnol	10.1186/1472-6750-13-48	2013
	Zisland Explorer: detect genomic islands by combining homogeneity and heterogeneity properties.	Wei W, Gao F, Du MZ, Hua HL, Wang J, Guo FB.	Brief Bioinform	10.1093/bib/bbw019	2017
Phylogeny	A multilocus sequence typing scheme implies population structure and reveals several putative novel Achromobacter species.	Spilker T, Vandamme P, Lipuma JJ.	J Clin Microbiol	10.1128/jcm.00814-12	2012
Metabolism	Cloning, characterization and analysis of cat and ben genes from the phenol degrading halophilic bacterium Halomonas organivorans.	de Lourdes Moreno M, Sanchez-Porro C, Piubeli F, Frias L, Garcia MT, Mellado E.	PLoS One	10.1371/journal.pone.0021049	2011
Phylogeny	Detection and differentiation of Bordetella spp. by real-time PCR.	Koidl C, Bozic M, Burmeister A, Hess M, Marth E, Kessler HH.	J Clin Microbiol	10.1128/jcm.01303-06	2007
Metabolism	Regulation and evolution of malonate and propionate catabolism in proteobacteria.	Suvorova IA, Ravcheev DA, Gelfand MS.	J Bacteriol	10.1128/jb.00163-12	2012
Metabolism	Genomic and functional analyses of the 2-aminophenol catabolic pathway and partial conversion of its substrate into picolinic acid in Burkholderia xenovorans LB400.	Chirino B, Strahsburger E, Agullo L, Gonzalez M, Seeger M.	PLoS One	10.1371/journal.pone.0075746	2013
Metabolism	A novel hydrolase identified by genomic-proteomic analysis of phenylurea herbicide mineralization by Variovorax sp. strain SRS16.	Bers K, Leroy B, Breugelmans P, Albers P, Lavigne R, Sorensen SR, Aamand J, De Mot R, Wattiez R, Springael D.	Appl Environ Microbiol	10.1128/aem.06162-11	2011
Genetics	Life Within a Contaminated Niche: Comparative Genomic Analyses of an Integrative Conjugative Element ICEnahCSV86 and Two Genomic Islands From Pseudomonas bharatica CSV86^T Suggest Probable Role in Colonization and Adaptation.	Mohapatra B, Malhotra H, Phale PS.	Front Microbiol	10.3389/fmicb.2022.928848	2022
Enzymology	Self-subunit swapping occurs in another gene type of cobalt nitrile hydratase.	Liu Y, Cui W, Xia Y, Cui Y, Kobayashi M, Zhou Z.	PLoS One	10.1371/journal.pone.0050829	2012
Genetics	Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements.	Ryan MP, Pembroke JT, Adley CC.	BMC Microbiol	10.1186/1471-2180-9-242	2009
	Genotypic and phenotypic applications for the differentiation and species-level identification of achromobacter for clinical diagnoses.	Gomila M, Prince-Manzano C, Svensson-Stadler L, Busquets A, Erhard M, Martinez DL, Lalucat J, Moore ER.	PLoS One	10.1371/journal.pone.0114356	2014
	Matching curated genome databases: a non trivial task.	Descorps-Declere S, Barba M, Labedan B.	BMC Genomics	10.1186/1471-2164-9-501	2008
Genetics	A marine inducible prophage vB_CibM-P1 isolated from the aerobic anoxygenic phototrophic bacterium Citromicrobium bathyomarinum JL354.	Zheng Q, Zhang R, Xu Y, White RA, Wang Y, Luo T, Jiao N.	Sci Rep	10.1038/srep07118	2014
Metabolism	p-Cymene Promotes Its Catabolism through the p-Cymene and the p-Cumate Pathways, Activates a Stress Response and Reduces the Biofilm Formation in Burkholderia xenovorans LB400.	Agullo L, Romero-Silva MJ, Domenech M, Seeger M.	PLoS One	10.1371/journal.pone.0169544	2017
Genetics	Genomic island excisions in Bordetella petrii.	Lechner M, Schmitt K, Bauer S, Hot D, Hubans C, Levillain E, Locht C, Lemoine Y, Gross R.	BMC Microbiol	10.1186/1471-2180-9-141	2009
Phylogeny	Multilocus sequence analysis of isolates of Achromobacter from patients with cystic fibrosis reveals infecting species other than Achromobacter xylosoxidans.	Ridderberg W, Wang M, Norskov-Lauritsen N.	J Clin Microbiol	10.1128/jcm.00728-12	2012
	Towards a more accurate annotation of tyrosine-based site-specific recombinases in bacterial genomes.	Van Houdt R, Leplae R, Lima-Mendez G, Mergeay M, Toussaint A.	Mob DNA	10.1186/1759-8753-3-6	2012
	Characterization and genomic analysis of kraft lignin biodegradation by the beta-proteobacterium Cupriavidus basilensis B-8.	Shi Y, Chai L, Tang C, Yang Z, Zhang H, Chen R, Chen Y, Zheng Y.	Biotechnol Biofuels	10.1186/1754-6834-6-1	2013
Enzymology	Broad-host-range plasmids from agricultural soils have IncP-1 backbones with diverse accessory genes.	Sen D, Van der Auwera GA, Rogers LM, Thomas CM, Brown CJ, Top EM.	Appl Environ Microbiol	10.1128/aem.05439-11	2011
Phenotype	Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes.	Jakobsen TH, Hansen MA, Jensen PO, Hansen L, Riber L, Cockburn A, Kolpen M, Ronne Hansen C, Ridderberg W, Eickhardt S, Hansen M, Kerpedjiev P, Alhede M, Qvortrup K, Burmolle M, Moser C, Kuhl M, Ciofu O, Givskov M, Sorensen SJ, Hoiby N, Bjarnsholt T.	PLoS One	10.1371/journal.pone.0068484	2013
Metabolism	Isolation and preliminary characterization of amino acid substitution mutations that increase the activity of the osmoregulated ProP protein of Salmonella enterica serovar Typhimurium.	Gasper BJ, McCreight JC, Banschbach K, Bustion A, Davis C, Divecha R, Donoho M, Elmore AG, Garrison CM, Glenn S, Goeman DC, Haby M, Hooks T, Korman AM, Kowal J, Kuschke S, Mellencamp JE, Meyer M, Myers AN, Nichols MF, Pfeifer A, Porucznik A, Qu X, Ramos-Miller M, Reed RR, Sagintayev A, Singel JM, Smith A, Valle ME, Venderley A, Weber CA, Zaffino AJ, Csonka LN, Gardner SM.	DNA Cell Biol	10.1089/dna.2011.1510	2012
Metabolism	Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions.	Schmidtke C, Findeiss S, Sharma CM, Kuhfuss J, Hoffmann S, Vogel J, Stadler PF, Bonas U.	Nucleic Acids Res	10.1093/nar/gkr904	2012
Metabolism	Identification of genes and pathways related to phenol degradation in metagenomic libraries from petroleum refinery wastewater.	Silva CC, Hayden H, Sawbridge T, Mele P, De Paula SO, Silva LC, Vidigal PM, Vicentini R, Sousa MP, Torres AP, Santiago VM, Oliveira VM.	PLoS One	10.1371/journal.pone.0061811	2013
	Lengths of Orthologous Prokaryotic Proteins Are Affected by Evolutionary Factors.	Tatarinova T, Salih B, Dien Bard J, Cohen I, Bolshoy A.	Biomed Res Int	10.1155/2015/786861	2015
Metabolism	The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation.	Guglielmini J, Quintais L, Garcillan-Barcia MP, de la Cruz F, Rocha EP.	PLoS Genet	10.1371/journal.pgen.1002222	2011
Metabolism	Combined genomic and proteomic approaches identify gene clusters involved in anaerobic 2-methylnaphthalene degradation in the sulfate-reducing enrichment culture N47.	Selesi D, Jehmlich N, von Bergen M, Schmidt F, Rattei T, Tischler P, Lueders T, Meckenstock RU.	J Bacteriol	10.1128/jb.00874-09	2010
Pathogenicity	The dlt operon of Bacillus cereus is required for resistance to cationic antimicrobial peptides and for virulence in insects.	Abi Khattar Z, Rejasse A, Destoumieux-Garzon D, Escoubas JM, Sanchis V, Lereclus D, Givaudan A, Kallassy M, Nielsen-Leroux C, Gaudriault S.	J Bacteriol	10.1128/jb.00892-09	2009
Enzymology	A highly stable plastidic-type ferredoxin-NADP(H) reductase in the pathogenic bacterium Leptospira interrogans.	Catalano-Dupuy DL, Musumeci MA, Lopez-Rivero A, Ceccarelli EA.	PLoS One	10.1371/journal.pone.0026736	2011
Genetics	The cyst-dividing bacterium Ramlibacter tataouinensis TTB310 genome reveals a well-stocked toolbox for adaptation to a desert environment.	De Luca G, Barakat M, Ortet P, Fochesato S, Jourlin-Castelli C, Ansaldi M, Py B, Fichant G, Coutinho PM, Voulhoux R, Bastien O, Marechal E, Henrissat B, Quentin Y, Noirot P, Filloux A, Mejean V, DuBow MS, Barras F, Barbe V, Weissenbach J, Mihalcescu I, Vermeglio A, Achouak W, Heulin T.	PLoS One	10.1371/journal.pone.0023784	2011
Metabolism	The Vein Patterning 1 (VEP1) gene family laterally spread through an ecological network.	Tarrio R, Ayala FJ, Rodriguez-Trelles F.	PLoS One	10.1371/journal.pone.0022279	2011
	Ehrlichia chaffeensis tandem repeat proteins and Ank200 are type 1 secretion system substrates related to the repeats-in-toxin exoprotein family.	Wakeel A, den Dulk-Ras A, Hooykaas PJ, McBride JW.	Front Cell Infect Microbiol	10.3389/fcimb.2011.00022	2011
Genetics	Using Mahalanobis distance to compare genomic signatures between bacterial plasmids and chromosomes.	Suzuki H, Sota M, Brown CJ, Top EM.	Nucleic Acids Res	10.1093/nar/gkn753	2008
	Methods of combinatorial optimization to reveal factors affecting gene length.	Bolshoy A, Tatarinova T.	Bioinform Biol Insights	10.4137/bbi.s10525	2012
Genetics	Phylogenetic distribution and evolutionary history of bacterial DEAD-Box proteins.	Lopez-Ramirez V, Alcaraz LD, Moreno-Hagelsieb G, Olmedo-Alvarez G.	J Mol Evol	10.1007/s00239-011-9441-8	2011
Metabolism	ABC transporters involved in export of cell surface glycoconjugates.	Cuthbertson L, Kos V, Whitfield C.	Microbiol Mol Biol Rev	10.1128/mmbr.00009-10	2010
	Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms.	Nasir A, Naeem A, Khan MJ, Nicora HD, Caetano-Anolles G.	Genes (Basel)	10.3390/genes2040869	2011
Phylogeny	Predicting the proteins of Angomonas deanei, Strigomonas culicis and their respective endosymbionts reveals new aspects of the trypanosomatidae family.	Motta MC, Martins AC, de Souza SS, Catta-Preta CM, Silva R, Klein CC, de Almeida LG, de Lima Cunha O, Ciapina LP, Brocchi M, Colabardini AC, de Araujo Lima B, Machado CR, de Almeida Soares CM, Probst CM, de Menezes CB, Thompson CE, Bartholomeu DC, Gradia DF, Pavoni DP, Grisard EC, Fantinatti-Garboggini F, Marchini FK, Rodrigues-Luiz GF, Wagner G, Goldman GH, Fietto JL, Elias MC, Goldman MH, Sagot MF, Pereira M, Stoco PH, de Mendonca-Neto RP, Teixeira SM, Maciel TE, de Oliveira Mendes TA, Urmenyi TP, de Souza W, Schenkman S, de Vasconcelos AT.	PLoS One	10.1371/journal.pone.0060209	2013
Enzymology	Evolutionary diversification and characterization of the eubacterial gene family encoding DXR type II, an alternative isoprenoid biosynthetic enzyme.	Carretero-Paulet L, Lipska A, Perez-Gil J, Sangari FJ, Albert VA, Rodriguez-Concepcion M.	BMC Evol Biol	10.1186/1471-2148-13-180	2013
	Bioinformatic characterization of the trimeric intracellular cation-specific channel protein family.	Silverio AL, Saier MH.	J Membr Biol	10.1007/s00232-011-9364-8	2011
	Evolution of the oligopeptide transporter family.	Gomolplitinant KM, Saier MH.	J Membr Biol	10.1007/s00232-011-9347-9	2011
	The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments.	Janssen PJ, Van Houdt R, Moors H, Monsieurs P, Morin N, Michaux A, Benotmane MA, Leys N, Vallaeys T, Lapidus A, Monchy S, Medigue C, Taghavi S, McCorkle S, Dunn J, van der Lelie D, Mergeay M.	PLoS One	10.1371/journal.pone.0010433	2010
	Adaptability and persistence of the emerging pathogen Bordetella petrii.	Zelazny AM, Ding L, Goldberg JB, Mijares LA, Conlan S, Conville PS, Stock F, Ballentine SJ, Olivier KN, Sampaio EP, Murray PR, Holland SM.	PLoS One	10.1371/journal.pone.0065102	2013
Enzymology	Molecular structure of WlbB, a bacterial N-acetyltransferase involved in the biosynthesis of 2,3-diacetamido-2,3-dideoxy-D-mannuronic acid .	Thoden JB, Holden HM.	Biochemistry	10.1021/bi1005738	2010
Pathogenicity	Drug Target Identification and Elucidation of Natural Inhibitors for Bordetella petrii: An In Silico Study.	Rath SN, Ray M, Pattnaik A, Pradhan SK	Genomics Inform	10.5808/GI.2016.14.4.241	2016
Enzymology	Activity Enhancement Based on the Chemical Equilibrium of Multiple-Subunit Nitrile Hydratase from Bordetella petrii.	Liu Y, Liu P, Lin L, Zhao Y, Zhong W, Wu L, Zhou Z, Sun W	Appl Biochem Biotechnol	10.1007/s12010-016-2079-7	2016
Metabolism	Successful expression of the Bordetella petrii nitrile hydratase activator P14K and the unnecessary role of Ser115.	Sun W, Zhu L, Chen X, Chen P, Yang L, Ding W, Zhou Z, Liu Y	BMC Biotechnol	10.1186/s12896-016-0252-2	2016
Pathogenicity	New mobile genetic elements in Cupriavidus metallidurans CH34, their possible roles and occurrence in other bacteria.	Van Houdt R, Monchy S, Leys N, Mergeay M	Antonie Van Leeuwenhoek	10.1007/s10482-009-9345-4	2009
Phylogeny	Saccharedens versatilis gen. nov., sp. nov., a sugar-degrading member of the Burkholderiales isolated from Cephalotes rohweri ant guts.	Lin JY, Hobson WJ, Wertz JT	Int J Syst Evol Microbiol	10.1099/ijsem.0.001650	2017
Phylogeny	Bordetella petrii sp. nov., isolated from an anaerobic bioreactor, and emended description of the genus Bordetella.	von Wintzingerode F, Schattke A, Siddiqui RA, Rosick U, Gobel UB, Gross R	Int J Syst Evol Microbiol	10.1099/00207713-51-4-1257	2001

References

#4829	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12804
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#23282	F von Wintzingerode, A Schattke, R A Siddiqui, U Rösick, U B Göbel, R Gross: Bordetella petrii sp. nov., isolated from an anaerobic bioreactor, and emended description of the genus Bordetella.. IJSEM 51: 1257 - 1265 2001 ( DOI 10.1099/00207713-51-4-1257 , PubMed 11491321 )
#33725	; Curators of the CIP;
#55867	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 43448
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#121788	Collection of Institut Pasteur ; Curators of the CIP; CIP 107267
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bordetella petrii (DSM 12804, CCUG 43448, CIP 107267)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API zym

API 20NE

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000067205

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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