Name: Hymenobacter arizonensis OR362-8
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3801

Type strain:

Species: Hymenobacter arizonensis

Strain Designation: OR362-8

Culture col. no.: DSM 17870, ATCC BAA-1266, JCM 13504

Strain history: F. Garcia-Pichel OR362-8.

NCBI tax ID(s): 1227077 (species)

SI-ID 298288

ATCC BAA-1266, DSM 17870, JCM 13504

Section

Hymenobacter arizonensis OR362-8 is a mesophilic, Gram-negative bacterium that was isolated from biological soil crusts.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Hymenobacter*
	Species	**Hymenobacter arizonensis**
	Full Scientific Name (LPSN)	Hymenobacter arizonensis Reddy and Garcia-Pichel 2013

Synonym

"Siccationidurans arizonensis"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.975

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7148]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7148]

Culture medium growth

[Ref.: #7148]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7148]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7148]			growth	30 °C
[Ref.: #67770]			growth	25 °C

[Ref.: #7148]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7148]	Sample type/isolated from	biological soil crusts
[Ref.: #7148]	Geographic location (country and/or sea, region)	Colorado Plateau
[Ref.: #7148]	Country	USA
[Ref.: #7148]	Country ISO 3 Code	USA
[Ref.: #7148]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Biological soil crusts sample from southwestern arid lands of the USA (42° 30' 716" N 118° 31' 993" W)
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
[Ref.: #67770]	Geographic location	42.5000°/-118.5170°
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX294485 (>99% sequence identity) for Siccationidurans arizonensis from Microbeatlas

Aquatic Samples	2
Soil Samples	15
Animal Samples
Plant Samples	1
Total Samples	18

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7148]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7148]	Hymenobacter arizonensis strain OR362-8 16S ribosomal RNA gene, partial sequence	JX294485	1422	ENA	1227077 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Hymenobacter arizonensis OR362-8,ATCC BAA-1266,JCM 13504	GCA_900115775	scaffold	GenBank	1227077 tax ID
[Ref.: #66792]	Hymenobacter arizonensis strain OR362-8,ATCC BAA-1266,JCM 13504	1227077.3	wgs	PATRIC	1227077 tax ID	*
[Ref.: #66792]	Siccationidurans arizonensis DSM 17870	2636416085	draft	JGI IMG/M	1227077 tax ID	*

[Ref.: #7148]	GC-content	70.0 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	67.5-72.5 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Siccationidurans arizonensis OR362-8,ATCC BAA-1266,JCM 13504 NCBI: GCA_900115775.1
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Hymenobacter arizonensis strain OR362-8,ATCC BAA-1266,JCM 13504 PATRIC: 1227077.3
[Ref.: #69480]	motile	no	93.836	no
[Ref.: #69480]	gram-positive	no	96.98	no
[Ref.: #69480]	anaerobic	no	99.586	no
[Ref.: #69480]	aerobic	yes	93.52	no
[Ref.: #69480]	halophile	no	93.688	no
[Ref.: #69480]	spore-forming	no	93.954	no
[Ref.: #69480]	glucose-util	yes	82.155	no
[Ref.: #69480]	flagellated	no	96.403	no
[Ref.: #69480]	thermophile	no	98.224	yes
[Ref.: #69480]	glucose-ferment	no	90.191	no

Availability in culture collections External links

[Ref.: #7148]

Culture collection no.

DSM 17870, ATCC BAA-1266, JCM 13504

[Ref.: #73313]

SI-ID 298288

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hymenobacter ginkgonis sp. nov., isolated from bark of Ginkgo biloba.	Cha I, Kang H, Kim H, Bae S, Joh K	Int J Syst Evol Microbiol	10.1099/ijsem.0.004343	2020	*
Phylogeny	Hymenobacter pedocola sp. nov., a novel bacterium isolated from soil.	Lim SJ, Ten LN, Kim BO, Kang IK, Jung HY	Int J Syst Evol Microbiol	10.1099/ijsem.0.002818	2018	*
Phylogeny	Red-pink pigmented Hymenobacter coccineus sp. nov., Hymenobacter lapidarius sp. nov. and Hymenobacter glacialis sp. nov., isolated from rocks in Antarctica.	Sedlacek I, Kralova S, Kyrova K, Maslanova I, Busse HJ, Stankova E, Vrbovska V, Nemec M, Bartak M, Holochova P, Svec P, Pantucek R	Int J Syst Evol Microbiol	10.1099/ijsem.0.001898	2017	*
Phylogeny	Hymenobacter sedentarius sp. nov., isolated from a soil.	Lee JJ, Kang MS, Joo ES, Jung HY, Kim MK	J Microbiol	10.1007/s12275-016-5386-3	2016	*
Phylogeny	Hymenobacter humi sp. nov., a bacterium isolated from soil.	Srinivasan S, Joo ES, Lee JJ, Kim MK	Antonie Van Leeuwenhoek	10.1007/s10482-015-0436-0	2015	*
Phylogeny	Description of Hymenobacter arizonensis sp. nov. from the southwestern arid lands of the United States of America.	Reddy GS, Garcia-Pichel F	Antonie Van Leeuwenhoek	10.1007/s10482-012-9812-1	2012	*

References

#7148

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17870

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73313

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID298288.1 )

* These data were automatically processed and therefore are not curated

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Siccationidurans arizonensis OR362-8,ATCC BAA-1266,JCM 13504

Hymenobacter arizonensis strain OR362-8,ATCC BAA-1266,JCM 13504

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