Name: Garritya polymorpha DSM 9678
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3794

Type strain:

Species: Garritya polymorpha

Culture col. no.: DSM 9678, ATCC 27820, IFO 16703, NBRC 16703

Strain history: <- ATCC <- R. A. Lewin

NCBI tax ID(s): 1001 (species)

SI-ID 7685

LMG 13165, ATCC 27820, DSM 9678, LMG 13575, LMG 13859, LMG 8390, NCIMB 12704, IFO 16703, NBRC 16703

Section

Garritya polymorpha DSM 9678 is a mesophilic bacterium that was isolated from decaying ascidian .

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Bernardetiaceae*
	Genus	*Garritya*
	Species	**Garritya polymorpha**
	Full Scientific Name (LPSN)	Garritya polymorpha (Lewin 1974) Hahnke et al. 2017

Synonym

Flexibacter polymorphus

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3605]

Culture medium

FLEXIBACTER MEDIUM (DSMZ Medium 668)

[Ref.: #3605]

Culture medium growth

[Ref.: #3605]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3605]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3605]			growth	30 °C

[Ref.: #3605]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3605]	Sample type/isolated from	decaying ascidian (Didemnum sp.)
[Ref.: #3605]	Host species	Didemnum
[Ref.: #3605]	Geographic location (country and/or sea, region)	La Paz
[Ref.: #3605]	Country	Mexico
[Ref.: #3605]	Country ISO 3 Code	MEX
[Ref.: #3605]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Other	#Decomposing animal
#Host	#Invertebrates (Other)	#Tunicata

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence NR_040913 (>99% sequence identity) for Garritya polymorpha subclade from Microbeatlas

Aquatic Samples	737
Soil Samples	1
Animal Samples	64
Plant Samples	1
Total Samples	803

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3605]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3605]	Garritya polymorpha strain IFO 16703 16S ribosomal RNA, partial sequence	NR_040913	1481	GenBank	1001 tax ID
[Ref.: #20218]	Flexibacter polymorphus 16S ribosomal RNA	M58786	1476	ENA	1001 tax ID	*
[Ref.: #20218]	Flexibacter polymorphus gene for 16S rRNA, strain:IFO 16703	AB078059	1481	ENA	1001 tax ID	*

Availability in culture collections External links

[Ref.: #3605]

Culture collection no.

DSM 9678, ATCC 27820, IFO 16703, NBRC 16703

[Ref.: #73306]

SI-ID 7685

References

#3605

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9678

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#73306

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID7685.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Garritya polymorpha in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF