Bordetella hinzii (DSM 11333, ATCC 51783, CIP 104527)

Name: Bordetella hinzii (DSM 11333, ATCC 51783, CIP 104527)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 378

Type strain

Strain Designation Blackall TC 58

Culture col. no. DSM 11333 ATCC 51783 CIP 104527 LMG 13501 CCUG 33847 4 more

NCBI tax ID(s) 398518 103855

Special Collections DSMZ CCUG JCM CIP Literature strains

History DSMZ <- LMG <- P. Blackall (Bordetella avium-like strain TC 58) JCM <-- LMG 13501 <-- P. J. Blackall TC58. CIP <- 1995, LMG <- J. Hommez, Belgium: strain Blackall TC 58

Links

Bordetella hinzii Blackall TC 58 is a Gram-negative, motile, rod-shaped human pathogen that forms circular colonies and was isolated from chicken trachea.

Gram-negative motile rod-shaped colony-forming human pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 9479

LMG 13501,CIP 104527,DSM 11333,NCTC 13199,ATCC 51783,CCUG 33847,CCM 4584,JCM 15550

@ref 20215

Last LPSN update 2026-05-29 08:25:01

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Bordetella

Species Bordetella hinzii

Full scientific name Bordetella hinzii Vandamme et al. 1995

BacDive ID	Other strains from **Bordetella hinzii** (7)	Type strain
137476	B. hinzii CIP 57.58, IAM 12593, LMG 1872, JCM 20670
138071	B. hinzii Blackall TC 102, CIP 104526, LMG 10979, CCUG ...
146890	B. hinzii CCUG 32380, LMG 13500
161604	B. hinzii JCM 15551, LMG 14052
161860	B. hinzii JCM 16709
161861	B. hinzii JCM 16710
172928	B. hinzii Bhi6, CRBIP4.207, BOR 207

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Flagellum arrangement	Confidence
23281	negative	rod-shaped	peritrichous
125439	negative			97.098
125438	negative			96.968

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period
23281	2 mm	greyish	circular	2 days
23281	5 mm
51780				2 days

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
4303	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
41209	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
4303	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
4303	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
119904	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
4303	positive	growth	37
41209	positive	growth	37
51780	positive	growth	30
51780	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
23281
125439		99.646
125438		91.188

Halophily

@ref	Salt	Growth	Tested relation	Concentration
23281	NaCl	positive	growth	6.5 %

Observation

67770

Observationquinones: Q-8

Tolerance

23281

CompoundCetrimide

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23281	27856 ChEBI	acetamide	+	builds base from
23281	17128 ChEBI	adipate	+	assimilation
23281	17128 ChEBI	adipate	+	builds base from
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
23281	28938 ChEBI	ammonium	+	nitrogen source
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
23281	16947 ChEBI	citrate	+	assimilation
23281	16947 ChEBI	citrate	+	carbon source
23281	8391 ChEBI	D-gluconate	-	assimilation
23281	17634 ChEBI	D-glucose	-	assimilation
23281	17634 ChEBI	D-glucose	-	fermentation
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
23281	16899 ChEBI	D-mannitol	-	assimilation
23281	16024 ChEBI	D-mannose	-	assimilation
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
23281	27689 ChEBI	decanoate	-	assimilation
23281	4853 ChEBI	esculin	-	hydrolysis
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
23281	5291 ChEBI	gelatin	-	hydrolysis
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
23281	15428 ChEBI	glycine	+	builds base from
23281	30849 ChEBI	L-arabinose	-	assimilation
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
23281	25115 ChEBI	malate	+	assimilation
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
23281	48537 ChEBI	malonamide	+	builds base from
23281	15792 ChEBI	malonate	+	builds base from
23281	17306 ChEBI	maltose	-	assimilation
23281	506227 ChEBI	N-acetylglucosamine	-	assimilation
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
23281	17632 ChEBI	nitrate	-	reduction
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
23281	18401 ChEBI	phenylacetate	+	assimilation
23281	45422 ChEBI	propionamide	+	builds base from
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
23281	31011 ChEBI	valerate	+	builds base from

Metabolite production

@ref	Chebi-ID	Metabolite	Production
23281	35581 ChEBI	indole
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test	Citrate test
23281	16947 ChEBI	citrate		+
68369	35581 ChEBI	indole	-		from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
23281	catalase	+	1.11.1.6
23281	cytochrome oxidase	+	1.9.3.1
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
23281	gelatinase	-
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	biotin biosynthesis	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	cardiolipin biosynthesis	100	7 of 7
66794	quinate degradation	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	ethanol fermentation	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	valine metabolism	100	9 of 9
66794	propanol degradation	100	7 of 7
66794	L-lactaldehyde degradation	100	3 of 3
66794	gallate degradation	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	taurine degradation	100	1 of 1
66794	aerobactin biosynthesis	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	ubiquinone biosynthesis	100	7 of 7
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	sulfopterin metabolism	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	ceramide biosynthesis	100	1 of 1
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	citric acid cycle	92.86	13 of 14
66794	leucine metabolism	92.31	12 of 13
66794	phenylalanine metabolism	92.31	12 of 13
66794	phenol degradation	90	18 of 20
66794	Entner Doudoroff pathway	90	9 of 10
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	lipid A biosynthesis	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	photosynthesis	85.71	12 of 14
66794	heme metabolism	85.71	12 of 14
66794	vitamin B1 metabolism	84.62	11 of 13
66794	alanine metabolism	82.76	24 of 29
66794	vitamin B6 metabolism	81.82	9 of 11
66794	proline metabolism	81.82	9 of 11
66794	methionine metabolism	80.77	21 of 26
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	lipoate biosynthesis	80	4 of 5
66794	3-phenylpropionate degradation	80	12 of 15
66794	3-chlorocatechol degradation	80	4 of 5
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	glutathione metabolism	78.57	11 of 14
66794	4-hydroxymandelate degradation	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	tryptophan metabolism	76.32	29 of 38
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	lactate fermentation	75	3 of 4
66794	degradation of aromatic, nitrogen containing compounds	75	9 of 12
66794	toluene degradation	75	3 of 4
66794	oxidative phosphorylation	72.53	66 of 91
66794	purine metabolism	72.34	68 of 94
66794	cysteine metabolism	72.22	13 of 18
66794	tyrosine metabolism	71.43	10 of 14
66794	arginine metabolism	70.83	17 of 24
66794	propionate fermentation	70	7 of 10
66794	sulfate reduction	69.23	9 of 13
66794	histidine metabolism	68.97	20 of 29
66794	non-pathway related	68.42	26 of 38
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	octane oxidation	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	lysine metabolism	66.67	28 of 42
66794	cyanate degradation	66.67	2 of 3
66794	flavin biosynthesis	66.67	10 of 15
66794	acetoin degradation	66.67	2 of 3
66794	glycolysis	64.71	11 of 17
66794	lipid metabolism	64.52	20 of 31
66794	pyrimidine metabolism	64.44	29 of 45
66794	pentose phosphate pathway	63.64	7 of 11
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	urea cycle	61.54	8 of 13
66794	factor 420 biosynthesis	60	3 of 5
66794	cellulose degradation	60	3 of 5
66794	vitamin K metabolism	60	3 of 5
66794	creatinine degradation	60	3 of 5
66794	4-hydroxyphenylacetate degradation	60	6 of 10
66794	reductive acetyl coenzyme A pathway	57.14	4 of 7
66794	degradation of sugar alcohols	56.25	9 of 16
66794	androgen and estrogen metabolism	56.25	9 of 16
66794	degradation of sugar acids	52	13 of 25
66794	resorcinol degradation	50	1 of 2
66794	carnitine metabolism	50	4 of 8
66794	pantothenate biosynthesis	50	3 of 6
66794	cyclohexanol degradation	50	2 of 4
66794	glycine metabolism	50	5 of 10
66794	ribulose monophosphate pathway	50	1 of 2
66794	nitrate assimilation	44.44	4 of 9
66794	allantoin degradation	44.44	4 of 9
66794	degradation of hexoses	44.44	8 of 18
66794	degradation of pentoses	42.86	12 of 28
66794	bile acid biosynthesis, neutral pathway	41.18	7 of 17
66794	arachidonate biosynthesis	40	2 of 5
66794	glycogen metabolism	40	2 of 5
66794	hydrogen production	40	2 of 5
66794	ascorbate metabolism	36.36	8 of 22
66794	cholesterol biosynthesis	36.36	4 of 11
66794	polyamine pathway	34.78	8 of 23
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	enterobactin biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	coenzyme M biosynthesis	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	mevalonate metabolism	28.57	2 of 7
66794	arachidonic acid metabolism	27.78	5 of 18
66794	chlorophyll metabolism	27.78	5 of 18
66794	d-xylose degradation	27.27	3 of 11
66794	metabolism of disaccharids	27.27	3 of 11
66794	alginate biosynthesis	25	1 of 4
66794	phenylpropanoid biosynthesis	23.08	3 of 13

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
4303	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	+	+
4303	-	-	-	-	-	-	-	-	-	-	-	+/-	-	+/-	-	+	+	+	+	+	+
4303	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Birds	#Chicken
#Host Body-Site	#Oral cavity and airways	#Trachea

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Sampling date	Geographic location	Isolation date
4303	chicken trachea	Australia	AUS	Australia and Oceania	-27	133 -27/133
51780	Chicken trachea	Australia	AUS	Australia and Oceania			1990	Moorooka
67770	Chicken trachea
119904	Chicken, trachea	Australia	AUS	Australia and Oceania					1993

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
4303			2	Risk group (German classification) According to TRBA 466
119904			2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	52191_A01 assembly for Bordetella hinzii NCTC13199	complete	GCA_900637615	103855.90	8117984076	103855	98.19
67770	ASM154847v1 assembly for Bordetella hinzii LMG 13501	contig	GCA_001548475	398518.3	2728369170	398518	61.22

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Bordetella hinzii 16S ribosomal RNA gene, complete sequence	AF177667	1522		398518

GC content

@ref	GC-content (mol%)	Method
23281	66.00	thermal denaturation, midpoint method (Tm)
67770	66	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: 52191_A01 assembly for Bordetella hinzii NCTC13199
NCBI: GCA_900637615

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	60.90	no
125439	gram_stain	BacteriaNetⓘ	negative	97.10	no
125439	motility	BacteriaNetⓘ	yes	76.80	no
125439	spore_formation	BacteriaNetⓘ	no	99.65	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bordetella hinzii LMG 13501
PATRIC: 398518.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.97	yes
125438	anaerobic	anaerobicⓘ	no	98.00	no
125438	spore-forming	spore-formingⓘ	no	91.19	yes
125438	aerobic	aerobicⓘ	yes	88.17	no
125438	thermophilic	thermophileⓘ	no	97.91	yes
125438	flagellated	motile2+ⓘ	yes	86.08	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Rapid identification of Acinetobacter spp. by fluorescence in situ hybridization (FISH) from colony and blood culture material.	Frickmann H, Essig A, Hagen RM, Riecker M, Jerke K, Ellison D, Poppert S.	Eur J Microbiol Immunol (Bp)	10.1556/eujmi.1.2011.4.4	2011
Phylogeny	Detection and differentiation of Bordetella spp. by real-time PCR.	Koidl C, Bozic M, Burmeister A, Hess M, Marth E, Kessler HH.	J Clin Microbiol	10.1128/jcm.01303-06	2007
	Transcriptional diversification in a human-adapting zoonotic pathogen drives niche-specific evolution.	Ghosh S, Wu CJ, Moller AG, Launay A, Hall LN, Hansen BT, Fischer ER, Youn JH, Khil PP, Dekker JP.	Nat Commun	10.1038/s41467-025-57331-6	2025
Enzymology	Evaluation of specificity of BP3385 for Bordetella pertussis detection.	Register KB, Nicholson TL, Guthrie JL.	J Clin Microbiol	10.1128/jcm.00945-10	2010
Phylogeny	Fluorescence in situ hybridization for rapid identification of Achromobacter xylosoxidans and Alcaligenes faecalis recovered from cystic fibrosis patients.	Wellinghausen N, Wirths B, Poppert S.	J Clin Microbiol	10.1128/jcm.00508-06	2006
	First Report of Strawberry Crown Rot Caused by Xanthomonas fragariae in China	Song Z, Yang C, Zeng R, Gao S, Cheng W, Gao P, Xu L, Dai F.	Plant Dis		2021
	The rumen microbiota and metabolism of dairy cows are affected by the dietary rate of inclusion of Yucca schidigera extract.	Snelling TJ, Condren M, Huntington JA, Warren HE, Taylor-Pickard J, Sinclair LA.	Microbiol Spectr	10.1128/spectrum.00641-25	2025
Genetics	The hidden life of Xylella: mining the NCBI Sequence Read Archive reveals potential new species, host plants, and infected areas for this elusive bacterial plant pathogen.	Briand M, Jacques M-A, Dittmer J.	Appl Environ Microbiol	10.1128/aem.00913-25	2025
Genetics	The SMC Hinge is a Selective Gate for Obstacle Bypass.	Liu HW, Roisne-Hamelin F, Taschner M, Collier J, Srinivasan M, Gruber S.	Nat Commun	10.1038/s41467-025-65408-5	2025
	Draft Genome Sequence of the Necrotrophic Plant-Pathogenic Bacterium Pectobacterium carotovorum subsp. carotovorum Strain LMG 2410.	Rooney WM, Wojnowska M, Walker D.	Microbiol Resour Announc	10.1128/mra.00614-19	2019
	Draft Genome Sequence of Pseudomonas aeruginosa Strain LMG 1272, an Atypical White Line Reaction Producer.	Salari F, Zare-Mirakabad F, Alavi MH, Girard L, Ghafari M, De Mot R, Rokni-Zadeh H.	Microbiol Resour Announc	10.1128/mra.01363-19	2020
Pathogenicity	Environmental Origin of the Genus Bordetella.	Hamidou Soumana I, Linz B, Harvill ET.	Front Microbiol	10.3389/fmicb.2017.00028	2017
Genetics	Alleviating arsenic stress affecting the growth of Vigna radiata through the application of Klebsiella strain ASBT-KP1 isolated from wastewater.	Prasad M, Madhavan A, Babu P, Salim A, Subhash S, Nair BG, Pal S.	Front Microbiol	10.3389/fmicb.2024.1484069	2024
Genetics	High genomic plasticity and unique features of Xanthomonas translucens pv. graminis revealed through comparative analysis of complete genome sequences.	Goettelmann F, Koebnik R, Roman-Reyna V, Studer B, Kolliker R.	BMC Genomics	10.1186/s12864-023-09855-8	2023
	The type-III effectors-based multiplex PCR for detection of Xanthomonas campestris pv. campestris causing black rot disease in crucifer crops.	Singh D, Singh D, Kesharwani AK, Avasthi AS.	3 Biotech	10.1007/s13205-023-03691-z	2023
	Draft Genome Sequence of the Plasmid-Free Lactococcus lactis subsp. lactis Strain LMG 19460.	Silva IN, Duarte S, Moreira LM, Monteiro GA.	Genome Announc	10.1128/genomea.00210-17	2017
	Complete Genome Sequences of Campylobacter hyointestinalis subsp. hyointestinalis Strain LMG 9260 and C. hyointestinalis subsp. lawsonii Strain LMG 15993.	Miller WG, Yee E, Chapman MH.	Genome Announc	10.1128/genomea.00665-16	2016
Phylogeny	Phylogenetic, Functional and Safety Features of 1950s B. infantis Strains.	Duboux S, Ngom-Bru C, De Bruyn F, Bogicevic B.	Microorganisms	10.3390/microorganisms10020203	2022
	Draft Genome Sequence of Xanthomonas sacchari Strain LMG 476.	Pieretti I, Bolot S, Carrere S, Barbe V, Cociancich S, Rott P, Royer M.	Genome Announc	10.1128/genomea.00146-15	2015
	Community-forming traits play role in effective colonization of plant-growth-promoting bacteria and improved plant growth.	Pathak D, Suman A, Sharma P, Aswini K, Govindasamy V, Gond S, Anshika R.	Front Plant Sci	10.3389/fpls.2024.1332745	2024
	Clustered Regularly Interspaced Short Palindromic Repeats in Xanthomonas citri-Witnesses to a Global Expansion of a Bacterial Pathogen over Time.	Bellanger N, Dereeper A, Koebnik R.	Microorganisms	10.3390/microorganisms10091715	2022
Phylogeny	Genome sequence of Xanthomonas axonopodis pv. punicae strain LMG 859.	Sharma V, Midha S, Ranjan M, Pinnaka AK, Patil PB.	J Bacteriol	10.1128/jb.00181-12	2012
	CRISPR genotyping as complementary tool for epidemiological surveillance of Erwinia amylovora outbreaks.	Mendes RJ, Luz JP, Santos C, Tavares F.	PLoS One	10.1371/journal.pone.0250280	2021
Phylogeny	Complete Genome Assemblies of All Xanthomonas translucens Pathotype Strains Reveal Three Genetically Distinct Clades.	Goettelmann F, Roman-Reyna V, Cunnac S, Jacobs JM, Bragard C, Studer B, Koebnik R, Kolliker R.	Front Microbiol	10.3389/fmicb.2021.817815	2021
	Bordetella pseudohinzii targets cilia and impairs tracheal cilia-driven transport in naturally acquired infection in mice.	Perniss A, Schmidt N, Gurtner C, Dietert K, Schwengers O, Weigel M, Hempe J, Ewers C, Pfeil U, Gartner U, Gruber AD, Hain T, Kummer W.	Sci Rep	10.1038/s41598-018-23830-4	2018
Pathogenicity	Isolation and Characterization of vB_PagP-SK1, a T7-Like Phage Infecting Pantoea agglomerans.	McDougall DL, Soutar CD, Perry BJ, Brown C, Alexander D, Yost CK, Stavrinides J.	Phage (New Rochelle)	10.1089/phage.2019.0012	2020
Enzymology	Adenylate cyclase toxin (ACT) from Bordetella hinzii: characterization and differences from ACT of Bordetella pertussis.	Donato GM, Hsia HL, Green CS, Hewlett EL.	J Bacteriol	10.1128/jb.187.22.7579-7588.2005	2005
Phylogeny	Endophytic Bacteria From the Roots of the Medicinal Plant Alkanna tinctoria Tausch (Boraginaceae): Exploration of Plant Growth Promoting Properties and Potential Role in the Production of Plant Secondary Metabolites.	Rat A, Naranjo HD, Krigas N, Grigoriadou K, Maloupa E, Alonso AV, Schneider C, Papageorgiou VP, Assimopoulou AN, Tsafantakis N, Fokialakis N, Willems A.	Front Microbiol	10.3389/fmicb.2021.633488	2021
Metabolism	Biogenic selenium nanoparticles synthesized by Stenotrophomonas maltophilia SeITE02 loose antibacterial and antibiofilm efficacy as a result of the progressive alteration of their organic coating layer.	Cremonini E, Boaretti M, Vandecandelaere I, Zonaro E, Coenye T, Lleo MM, Lampis S, Vallini G.	Microb Biotechnol	10.1111/1751-7915.13260	2018
	A Review of the Antibacterial, Fungicidal and Antiviral Properties of Selenium Nanoparticles.	Serov DA, Khabatova VV, Vodeneev V, Li R, Gudkov SV.	Materials (Basel)	10.3390/ma16155363	2023
Phylogeny	Application of 16S rRNA gene sequencing to identify Bordetella hinzii as the causative agent of fatal septicemia.	Kattar MM, Chavez JF, Limaye AP, Rassoulian-Barrett SL, Yarfitz SL, Carlson LC, Houze Y, Swanzy S, Wood BL, Cookson BT.	J Clin Microbiol	10.1128/jcm.38.2.789-794.2000	2000
Phylogeny	Ribosomal DNA-directed PCR for identification of Achromobacter (Alcaligenes) xylosoxidans recovered from sputum samples from cystic fibrosis patients.	Liu L, Coenye T, Burns JL, Whitby PW, Stull TL, LiPuma JJ.	J Clin Microbiol	10.1128/jcm.40.4.1210-1213.2002	2002
Phylogeny	PirVP genes causing AHPND identified in a new Vibrio species (Vibrio punensis) within the commensal Orientalis clade.	Restrepo L, Bayot B, Arciniegas S, Bajana L, Betancourt I, Panchana F, Reyes Munoz A.	Sci Rep	10.1038/s41598-018-30903-x	2018
Metabolism	Interaction between 2,4-Diacetylphloroglucinol- and Hydrogen Cyanide-Producing Pseudomonas brassicacearum LBUM300 and Clavibacter michiganensis subsp. michiganensis in the Tomato Rhizosphere.	Paulin MM, Novinscak A, Lanteigne C, Gadkar VJ, Filion M.	Appl Environ Microbiol	10.1128/aem.00073-17	2017
Pathogenicity	Antimicrobial activity of essential oils against multidrug-resistant clinical isolates of the Burkholderia cepacia complex.	Vasireddy L, Bingle LEH, Davies MS.	PLoS One	10.1371/journal.pone.0201835	2018
Enzymology	Comprehensive analysis of clinical Burkholderia pseudomallei isolates demonstrates conservation of unique lipid A structure and TLR4-dependent innate immune activation.	Sengyee S, Yoon SH, Paksanont S, Yimthin T, Wuthiekanun V, Limmathurotsakul D, West TE, Ernst RK, Chantratita N.	PLoS Negl Trop Dis	10.1371/journal.pntd.0006287	2018
Phylogeny	Bacteriophages LIMElight and LIMEzero of Pantoea agglomerans, belonging to the "phiKMV-like viruses".	Adriaenssens EM, Ceyssens PJ, Dunon V, Ackermann HW, Van Vaerenbergh J, Maes M, De Proft M, Lavigne R.	Appl Environ Microbiol	10.1128/aem.00128-11	2011
Phylogeny	Sequence diversity in the Dickeya fliC gene: phylogeny of the Dickeya genus and TaqMan® PCR for 'D. solani', new biovar 3 variant on potato in Europe.	Van Vaerenbergh J, Baeyen S, De Vos P, Maes M.	PLoS One	10.1371/journal.pone.0035738	2012
Phylogeny	Comparative genome analysis of pathogenic and non-pathogenic Clavibacter strains reveals adaptations to their lifestyle.	Zaluga J, Stragier P, Baeyen S, Haegeman A, Van Vaerenbergh J, Maes M, De Vos P.	BMC Genomics	10.1186/1471-2164-15-392	2014
Metabolism	Production of multiple bacteriocins from a single locus by gastrointestinal strains of Lactobacillus salivarius.	O'Shea EF, O'Connor PM, Raftis EJ, O'Toole PW, Stanton C, Cotter PD, Ross RP, Hill C.	J Bacteriol	10.1128/jb.06221-11	2011
	Improved cloning vectors for bifidobacteria, based on the Bifidobacterium catenulatum pBC1 replicon.	Alvarez-Martin P, Belen Florez A, Margolles A, del Solar G, Mayo B.	Appl Environ Microbiol	10.1128/aem.00074-08	2008
	Genetic characterization of soybean rhizobia in Paraguay.	Chen LS, Figueredo A, Pedrosa FO, Hungria M.	Appl Environ Microbiol	10.1128/aem.66.11.5099-5103.2000	2000
	Discovery of a free-living chlorophyll d-producing cyanobacterium with a hybrid proteobacterial/cyanobacterial small-subunit rRNA gene.	Miller SR, Augustine S, Olson TL, Blankenship RE, Selker J, Wood AM.	Proc Natl Acad Sci U S A	10.1073/pnas.0405667102	2005
	Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. Manihotis strain CIO151.	Arrieta-Ortiz ML, Rodriguez-R LM, Perez-Quintero A, Poulin L, Diaz AC, Arias Rojas N, Trujillo C, Restrepo Benavides M, Bart R, Boch J, Boureau T, Darrasse A, David P, Duge de Bernonville T, Fontanilla P, Gagnevin L, Guerin F, Jacques MA, Lauber E, Lefeuvre P, Medina C, Medina E, Montenegro N, Munoz Bodnar A, Noel LD, Ortiz Quinones JF, Osorio D, Pardo C, Patil PB, Poussier S, Pruvost O, Robene-Soustrade I, Ryan RP, Tabima J, Urrego Morales OG, Verniere C, Carrere S, Verdier V, Szurek B, Restrepo S, Lopez C, Koebnik R, Bernal A.	PLoS One	10.1371/journal.pone.0079704	2013
Phylogeny	Lichenibacterium ramalinae gen. nov, sp. nov., Lichenibacterium minor sp. nov., the first endophytic, beta-carotene producing bacterial representatives from lichen thalli and the proposal of the new family Lichenibacteriaceae within the order Rhizobiales.	Pankratov TA, Grouzdev DS, Patutina EO, Kolganova TV, Suzina NE, Berestovskaya JJ.	Antonie Van Leeuwenhoek	10.1007/s10482-019-01357-6	2020
Genetics	Taxonogenomic analysis of the Xanthomonas translucens complex leads to the descriptions of Xanthomonas cerealis sp. nov. and Xanthomonas graminis sp. nov.	Tambong JT, Xu R, Fleitas MC, Kutcher R.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006523	2024
Phylogeny	Pusillimonas ginsengisoli sp. nov., isolated from soil of a ginseng field.	Srinivasan S, Kim MK, Sathiyaraj G, Kim YJ, Yang DC.	Int J Syst Evol Microbiol	10.1099/ijs.0.018358-0	2010

References

#4303	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11333
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#23281	P. VANDAMME, J. HOMMEZ, M. VANCANNEYT, M. MONSIEURS, B. HOSTE, B. COOKSON, C. H. WIRSING VON KÖNIG, K. KERSTERS, P. J. BLACKALL: Bordetella hinzii sp. nov., Isolated from Poultry and Humans. IJSEM 45: 37 - 45 1995 ( DOI 10.1099/00207713-45-1-37 , PubMed 7857806 )
#41209	; Curators of the CIP;
#51780	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 33847
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#119904	Collection of Institut Pasteur ; Curators of the CIP; CIP 104527
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bordetella hinzii (DSM 11333, ATCC 51783, CIP 104527)

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