Name: Saccharicrinis fermentans DSM 9555
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3773

Type strain:

Species: Saccharicrinis fermentans

Culture col. no.: DSM 9555, ATCC 19072, IAM 14302, NCIMB 2218, JCM 21142, CECT 7602, CIP 104805, IFO 15936, LMG 1338, NBRC 15936

Strain history: IAM 14302 <-- NCIMB 2218 <-- ATCC 19072 <-- H. Veldkamp.

NCBI tax ID(s): 982 (species)

Section

Saccharicrinis fermentans DSM 9555 is a mesophilic bacterium that was isolated from marine mud.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Marinilabiliaceae*
	Genus	*Saccharicrinis*
	Species	**Saccharicrinis fermentans**
	Full Scientific Name (PNU)	Saccharicrinis fermentans (Bachmann 1955) Yang et al. 2014

Synonym

Cytophaga fermentans

Information on morphological and physiological properties Morphology

[Ref.: #69480]

Gram stain

negative Confidence in %100

Multimedia content

[Ref.: #66793]

Caption:

electron microscopic image

[Ref.: #66793]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3636]

Culture medium

CYTOPHAGA MEDIUM (DSMZ Medium 669)

[Ref.: #3636]

Culture medium growth

[Ref.: #3636]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #3636]

Culture medium composition

expand / minimize

[Ref.: #35746]

Culture medium

MEDIUM 166 - for Cytophaga fermentans

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Culture medium growth

[Ref.: #35746]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #3636]	growth	30 °C
[Ref.: #35746]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #3636]	Temperature range	mesophilic
[Ref.: #35746]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.96

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3636]	Sample type/isolated from	marine mud

[Ref.: #67770]	Sample type/isolated from	Marine mud
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB517712 (>99% sequence identity) for Saccharicrinis fermentans subclade from Microbeatlas

Aquatic Samples	1715
Soil Samples	121
Animal Samples	641
Plant Samples	28
Total Samples	2505

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3636]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3636]	Cytophaga fermentans strain ATCC 19072 16S ribosomal RNA gene, partial sequence	M58766	1474	ENA	982 tax ID
[Ref.: #20218]	Cytophaga fermentans gene for 16S ribosomal RNA, partial sequence, strain: NBRC 15936	AB517712	1448	ENA	982 tax ID	*
[Ref.: #20218]	Cytophaga fermentans gene for 16S ribosomal RNA, partial sequence	D12661	1257	ENA	869213 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Saccharicrinis fermentans DSM 9555 = JCM 21142 DSM 9555	GCA_000517085	scaffold	GenBank	869213 tax ID
[Ref.: #67770]	Saccharicrinis fermentans DSM 9555 = JCM 21142 JCM 21142	GCA_000583675	contig	GenBank	869213 tax ID
[Ref.: #66792]	Cytophaga fermentans DSM 9555	869213.4	wgs	PATRIC	869213 tax ID	*
[Ref.: #66792]	Cytophaga fermentans JCM 21142	1236536.3	wgs	PATRIC	869213 tax ID	*
[Ref.: #66792]	Saccharicrinis fermentans JCM 21142	2576861787	draft	JGI IMG/M	869213 tax ID	*
[Ref.: #66792]	Saccharicrinis fermentans DSM 9555	2509601038	draft	JGI IMG/M	869213 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Saccharicrinis fermentans DSM 9555 = JCM 21142 DSM 9555 NCBI: GCA_000517085.1
[Ref.: #69480]	spore-forming	no	99.96	yes
[Ref.: #69480]	anaerobic	yes	63.827	no
[Ref.: #69480]	gram-positive	no	100	yes
[Ref.: #69480]	thermophile	no	99.941	no
[Ref.: #69480]	motile	yes	70.627	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Saccharicrinis fermentans DSM 9555 = JCM 21142 DSM 9555 NCBI: GCA_000517085.1
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #3636]

Culture collection no.

DSM 9555, ATCC 19072, IAM 14302, NCIMB 2218, JCM 21142, CECT 7602, CIP 104805, IFO 15936, LMG 1338, NBRC 15936

[Ref.: #20218]

Associated Passport(s) in StrainInfo

161520, 854018, 150377, 150379

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharicrinis marinus sp. nov., isolated from marine sediment.	Liu QQ, Li J, Xiao D, Lu JX, Chen GJ, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000436	2015	*
Phylogeny	Saccharicrinis carchari sp. nov., isolated from a shark, and emended descriptions of the genus Saccharicrinis and Saccharicrinis fermentans.	Liu QQ, Wang Y, Li J, Du ZJ, Chen GJ	Int J Syst Evol Microbiol	10.1099/ijs.0.061986-0	2014	*
Genetics	Draft Genome Sequence of Cytophaga fermentans JCM 21142T, a Facultative Anaerobe Isolated from Marine Mud.	Starns D, Oshima K, Suda W, Iino T, Yuki M, Inoue J, Kitamura K, Iida T, Darby A, Hattori M, Ohkuma M	Genome Announc	10.1128/genomeA.00206-14	2014	*
Phylogeny	Carboxylicivirga gen. nov. in the family Marinilabiliaceae with two novel species, Carboxylicivirga mesophila sp. nov. and Carboxylicivirga taeanensis sp. nov., and reclassification of Cytophaga fermentans as Saccharicrinis fermentans gen. nov., comb. nov.	Yang SH, Seo HS, Woo JH, Oh HM, Jang H, Lee JH, Kim SJ, Kwon KK	Int J Syst Evol Microbiol	10.1099/ijs.0.053462-0	2014	*
Phylogeny	Marinifilum fragile gen. nov., sp. nov., isolated from tidal flat sediment.	Na H, Kim S, Moon EY, Chun J	Int J Syst Evol Microbiol	10.1099/ijs.0.009027-0	2009	*

References

#3636

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9555

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#35746 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Saccharicrinis fermentans DSM 9555 = JCM 21142 DSM 9555

Saccharicrinis fermentans DSM 9555 = JCM 21142 DSM 9555

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