Name: Bordetella avium DSM 11332
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 377

Type strain:

Species: Bordetella avium

Culture col. no.: DSM 11332, ATCC 35086, CCUG 13726, LMG 1852, Hinz 591-77, CIP 103348, NCTC 12033

Strain history: CIP <- 1989, LMG <- 1979, K.H. Hinz: strain 591-77, Bordetella bronchiseptica

NCBI tax ID(s): 521 (species)

SI-ID 1259

LMG 1852, ATCC 35086, CCUG 13726, DSM 11332, CIP 103348, NCTC 12033, CCM 6184, HAMBI 2160, VTT E-991291

Other strains from Bordetella avium

B. avium Hervouet, CIP 103004
B. avium CCUG 14270, LMG 1851
B. avium CCUG 14271
B. avium BAV 7, CRBIP4.108, BOR 108

Section

Bordetella avium DSM 11332 is an aerobe, chemoorganotroph, mesophilic animal pathogen that was isolated from turkey, air sac exudate.

Gram-negative
motile
rod-shaped
aerobe
animal pathogen
chemoorganotroph
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Alcaligenaceae*
	Genus	*Bordetella*
	Species	**Bordetella avium**
	Full Scientific Name (LPSN)	Bordetella avium Kersters et al. 1984

Information on morphological and physiological properties Morphology

[Ref.: #23280]	Gram stain	negative

[Ref.: #23280]	Cell length	1-2 µm

[Ref.: #23280]	Cell width	0.4-0.5 µm

[Ref.: #23280]	Cell shape	rod-shaped

[Ref.: #23280]	Motility	yes

[Ref.: #23280]	Flagellum arrangement	peritrichous

[Ref.: #23280]	Colony size	1 mm
[Ref.: #23280]	Colony shape	circular
[Ref.: #23280]	Cultivation medium used	blood agar

[Ref.: #23280]	Incubation period	2-4 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4302]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #4302]

Culture medium growth

[Ref.: #4302]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4302]

Culture medium composition

expand / minimize

[Ref.: #4302]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #4302]

Culture medium growth

[Ref.: #4302]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4302]

Culture medium composition

expand / minimize

[Ref.: #23280]

Culture medium

blood agar

[Ref.: #23280]

Culture medium growth

[Ref.: #23280]

Culture medium

MacConkey

[Ref.: #23280]

Culture medium growth

[Ref.: #23280]

Culture medium

Nutrient agar (NA)

[Ref.: #23280]

Culture medium growth

[Ref.: #23280]

Culture medium

Salmonella-shigella agar

[Ref.: #23280]

Culture medium growth

[Ref.: #23280]

Culture medium

VI agar

[Ref.: #23280]

Culture medium growth

[Ref.: #40613]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #40613]

Culture medium growth

[Ref.: #40613]

Culture medium composition

expand / minimize

[Ref.: #116668]

Culture medium

CIP Medium 3

[Ref.: #116668]

Culture medium growth

[Ref.: #116668]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #4302]	growth	37 °C
[Ref.: #23280]	optimum	37 °C
[Ref.: #40613]	growth	30 °C

[Ref.: #4302]	Temperature range	mesophilic
[Ref.: #23280]	Temperature range	mesophilic
[Ref.: #40613]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23280]

Oxygen tolerance

aerobe

[Ref.: #23280]

Nutrition type

chemoorganotroph

[Ref.: #23280]

Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23280]	2-oxoglutarate ChEBI	+	growth
[Ref.: #23280]	3-hydroxybutyrate ChEBI	+/-	growth
[Ref.: #23280]	acetamide ChEBI	+	builds base from
[Ref.: #23280]	acetate ChEBI	+	builds base from
[Ref.: #23280]	acetate ChEBI	+/-	growth
[Ref.: #23280]	adipate ChEBI	-	growth
[Ref.: #23280]	adipate ChEBI	+	builds base from
[Ref.: #23280]	ammonium ChEBI	+	nitrogen source
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #23280]	aspartate ChEBI	+	assimilation
[Ref.: #23280]	butanamide ChEBI	-	builds base from
[Ref.: #23280]	citrate ChEBI	+	builds base from
[Ref.: #23280]	citrate ChEBI	+	carbon source
[Ref.: #23280]	citrate ChEBI	+	growth
[Ref.: #23280]	D-gluconate ChEBI	-	carbon source
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #23280]	esculin ChEBI	-	hydrolysis
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #23280]	formamide ChEBI	+	builds base from
[Ref.: #23280]	formate ChEBI	+	builds base from
[Ref.: #23280]	fumarate ChEBI	+	growth
[Ref.: #23280]	gelatin ChEBI	-	hydrolysis
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #23280]	glucose ChEBI	-	builds acid from
[Ref.: #23280]	glucose ChEBI	-	builds base from
[Ref.: #23280]	glucose ChEBI	-	carbon source
[Ref.: #23280]	glutamate ChEBI	+	assimilation
[Ref.: #23280]	glutamine ChEBI	+	builds base from
[Ref.: #23280]	glutaric acid ChEBI	+	growth
[Ref.: #23280]	glycolate ChEBI	-	carbon source
[Ref.: #23280]	itaconate ChEBI	-	carbon source
[Ref.: #23280]	L-asparagine ChEBI	+	builds base from
[Ref.: #23280]	L-aspartate ChEBI	+	growth
[Ref.: #23280]	L-glutamate ChEBI	+	carbon source
[Ref.: #23280]	L-glutamate ChEBI	+	growth
[Ref.: #23280]	L-proline ChEBI	+	carbon source
[Ref.: #23280]	L-proline ChEBI	+	growth
[Ref.: #23280]	L-tyrosine ChEBI	+/-	growth
[Ref.: #23280]	lactate ChEBI	+	growth
[Ref.: #23280]	malate ChEBI	+	growth
[Ref.: #23280]	malonamide ChEBI	-	builds base from
[Ref.: #23280]	malonate ChEBI	-	carbon source
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #23280]	meso-tartrate ChEBI	-	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #23280]	nitrate ChEBI	-	builds gas from
[Ref.: #23280]	nitrate ChEBI	-	reduction
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #23280]	nitrite ChEBI	-	builds gas from
[Ref.: #23280]	phenylacetate ChEBI	-	growth
[Ref.: #23280]	pimelate ChEBI	-	carbon source
[Ref.: #23280]	proline ChEBI	+	assimilation
[Ref.: #23280]	propionamide ChEBI	+	builds base from
[Ref.: #23280]	propionate ChEBI	+	builds base from
[Ref.: #23280]	pyruvate ChEBI	+	assimilation
[Ref.: #23280]	pyruvate ChEBI	+	carbon source
[Ref.: #23280]	pyruvate ChEBI	+	growth
[Ref.: #23280]	succinamate ChEBI	+	builds base from
[Ref.: #23280]	succinate ChEBI	+	assimilation
[Ref.: #23280]	succinate ChEBI	+	carbon source
[Ref.: #23280]	succinate ChEBI	+	growth
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #23280]	xylose ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #23280]		penicillin g ChEBI	no			yes	2	Unit (disc)
[Ref.: #23280]		penicillin g ChEBI	yes	10	Unit (disc)

	Metabolite production	Metabolite	Production
[Ref.: #23280]		indole ChEBI	no
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test	Citrate test
[Ref.: #23280]		citrate ChEBI		+
[Ref.: #68369]		indole ChEBI	-		* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #23280]	acid phosphatase	+	3.1.3.2
[Ref.: #23280]	alkaline phosphatase	+/-	3.1.3.1
[Ref.: #23280]	alpha-chymotrypsin	+/-	3.4.21.1
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #23280]	catalase	+	1.11.1.6
[Ref.: #23280]	cytochrome oxidase	-	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #23280]	esterase (C 4)	+
[Ref.: #23280]	esterase lipase (C 8)	+/-
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #23280]	L-leucyl-2-naphthylamide hydrolase	+
[Ref.: #23280]	phenylalanine deaminase	-	4.3.1.5
[Ref.: #23280]	phosphoamidase	+	3.9.1.1
[Ref.: #23280]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #4302]	24445	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	+/-	+	+	+
[Ref.: #4302]	23683	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	+/-	+	+	+
[Ref.: #4302]	23682	-	-	-	-	-	-	-	-	-	+/-	-	+/-	-	-	-	-	+	+	+	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4302]	Sample type/isolated from	turkey, air sac exudate
[Ref.: #4302]	Geographic location (country and/or sea, region)	Hannover
[Ref.: #4302]	Country	Germany
[Ref.: #4302]	Country ISO 3 Code	DEU
[Ref.: #4302]	Continent	Europe

[Ref.: #46006]	Sample type/isolated from	Turkey poults respiratory tract (Air sac exudate)
[Ref.: #46006]	Sampling date	1977
[Ref.: #46006]	Country	Germany
[Ref.: #46006]	Country ISO 3 Code	DEU
[Ref.: #46006]	Continent	Europe

[Ref.: #116668]	Sample type/isolated from	Animal, Turkey, respiratory tract
[Ref.: #116668]	Geographic location (country and/or sea, region)	Hanover
[Ref.: #116668]	Country	Germany
[Ref.: #116668]	Country ISO 3 Code	DEU
[Ref.: #116668]	Continent	Europe
[Ref.: #116668]	Isolation date	1977
* marker position based on {}

Isolation sources categories

#Host	#Birds	-
#Host Body-Site	#Oral cavity and airways	-
#Host Body Product	#Fluids	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4302]	Pathogenicity (animal)	yes
[Ref.: #4302]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #116668]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4302]	Bordetella avium 16S ribosomal RNA gene, complete sequence	AF177666	1522	ENA	521 tax ID
[Ref.: #20218]	Bordetella avium ATCC 35086 16S rRNA, partial sequence	U04947	1464	ENA	521 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bordetella avium ATCC 35086	GCA_003581385	contig	GenBank	521 tax ID	*
[Ref.: #66792]	Bordetella avium strain ATCC 35086	521.38	wgs	PATRIC	521 tax ID	*
[Ref.: #66792]	Bordetella avium ATCC 35086	2916308423	draft	JGI IMG/M	521 tax ID	*

[Ref.: #23280]

GC-content

61.6 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bordetella avium strain ATCC 35086 PATRIC: 521.38
[Ref.: #69480]	gram-positive	no	98.787	yes
[Ref.: #69480]	anaerobic	no	97.447	yes
[Ref.: #69480]	halophile	no	82.079	no
[Ref.: #69480]	spore-forming	no	94.825	yes
[Ref.: #69480]	glucose-util	no	79.292	no
[Ref.: #69480]	aerobic	yes	86.75	yes
[Ref.: #69480]	thermophile	no	98.818	yes
[Ref.: #69480]	motile	yes	89.173	yes
[Ref.: #69480]	flagellated	yes	75.123	yes
[Ref.: #69480]	glucose-ferment	no	88.632	yes

Availability in culture collections External links

[Ref.: #4302]

Culture collection no.

DSM 11332, ATCC 35086, CCUG 13726, LMG 1852, Hinz 591-77, CIP 103348, NCTC 12033

[Ref.: #70057]

SI-ID 1259

References

#4302

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11332

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23280

K. Kersters, K.-H. Hinz, A. Hertle, P. Segers, A. Lievens, O. Siegmann, J. De Ley: Bordetella avium sp. nov., Isolated from the Respiratory Tracts of Turkeys and Other Birds. IJSEM 34: 56 - 70 1984 ( DOI 10.1099/00207713-34-1-56 )

#40613 ; Curators of the CIP;
#46006 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 13726

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#70057

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID1259.1 )

#116668 Collection of Institut Pasteur ; Curators of the CIP; CIP 103348
* These data were automatically processed and therefore are not curated

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Bordetella avium strain ATCC 35086

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