Name: Anaeromyxobacter dehalogenans 2CP-C
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3757

Type strain:

Species: Anaeromyxobacter dehalogenans

Strain Designation: 2CP-C

Culture col. no.: DSM 21877, ATCC BAA-259

Strain history: <- S. H. Thomas, Georgia Institute of Technology, School of Civil and Environmental Engineering, Atlanta <- R. A. Sanford, Department of Civil and Environmental Engineering, University of Illinois

NCBI tax ID(s): 161493 (species)

SI-ID 87743

ATCC BAA-259

Other strains from Anaeromyxobacter dehalogenans

A. dehalogenans 2CP-1, DSM 21875, ATCC BAA-258 (type strain)
A. dehalogenans K, DSM 21876
A. dehalogenans FRC-W, DSM 21878
A. dehalogenans FRC-R5, DSM 22858
A. dehalogenans R, DSM 22859
A. dehalogenans FRC-D1, DSM 22860
A. dehalogenans FRC-D3, DSM 22861
A. dehalogenans FRC-R8, DSM 22862

Section

Anaeromyxobacter dehalogenans 2CP-C is an anaerobe, mesophilic bacterium that was isolated from rain forest soil.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Myxococcales*
	Family	*Anaeromyxobacteraceae*
	Genus	*Anaeromyxobacter*
	Species	**Anaeromyxobacter dehalogenans**
	Full Scientific Name (LPSN)	Anaeromyxobacter dehalogenans Sanford et al. 2002

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16015]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #16015]

Culture medium growth

[Ref.: #16015]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16015]

Culture medium composition

expand / minimize

[Ref.: #16015]

Culture medium

ANAEROMYXOBACTER-MEDIUM (DSMZ Medium 1200)

[Ref.: #16015]

Culture medium growth

[Ref.: #16015]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16015]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16015]			growth	28 °C

[Ref.: #16015]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16015]	Oxygen tolerance	anaerobe
[Ref.: #16015]	Oxygen tolerance	microaerophile
[Ref.: #16015]	Oxygen tolerance	aerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16015]	Sample type/isolated from	rain forest soil
[Ref.: #16015]	Country	Cameroon
[Ref.: #16015]	Country ISO 3 Code	CMR
[Ref.: #16015]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil
#Climate	#Hot	#Tropical

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF382399 (>99% sequence identity) for Anaeromyxobacter from Microbeatlas

Aquatic Samples	2438
Soil Samples	6429
Animal Samples	420
Plant Samples	937
Total Samples	10224

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16015]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Anaeromyxobacter dehalogenans strain 2CP-C 16S ribosomal RNA gene, partial sequence	AF382399	1534	ENA	290397 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Anaeromyxobacter dehalogenans 2CP-C	GCA_000013385	complete	GenBank	290397 tax ID	*
[Ref.: #66792]	Anaeromyxobacter dehalogenans 2CP-C	290397.18	complete	PATRIC	290397 tax ID	*
[Ref.: #66792]	Anaeromyxobacter dehalogenans 2CP-C	637000007	complete	JGI IMG/M	290397 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Anaeromyxobacter dehalogenans 2CP-C 2CP-C NCBI: GCA_000013385.1
[Ref.: #69480]	motile	yes	83.754	no
[Ref.: #69480]	flagellated	no	77.914	no
[Ref.: #69480]	gram-positive	no	98.585	no
[Ref.: #69480]	anaerobic	no	67.706	no
[Ref.: #69480]	halophile	no	93.892	no
[Ref.: #69480]	spore-forming	no	90.346	no
[Ref.: #69480]	thermophile	no	83.984	no
[Ref.: #69480]	glucose-util	no	50.695	no
[Ref.: #69480]	aerobic	no	83.069	no
[Ref.: #69480]	glucose-ferment	no	90.905	no

Availability in culture collections External links

[Ref.: #16015]

Culture collection no.

DSM 21877, ATCC BAA-259

[Ref.: #73269]

SI-ID 87743

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Nitrous Oxide Reduction Kinetics Distinguish Bacteria Harboring Clade I NosZ from Those Harboring Clade II NosZ.	Yoon S, Nissen S, Park D, Sanford RA, Loffler FE	Appl Environ Microbiol	10.1128/AEM.00409-16	2016	*
Metabolism	Analysis of periplasmic sensor domains from Anaeromyxobacter dehalogenans 2CP-C: structure of one sensor domain from a histidine kinase and another from a chemotaxis protein.	Pokkuluri PR, Dwulit-Smith J, Duke NE, Wilton R, Mack JC, Bearden J, Rakowski E, Babnigg G, Szurmant H, Joachimiak A, Schiffer M	Microbiologyopen	10.1002/mbo3.112	2013	*
Metabolism	Comparative c-type cytochrome expression analysis in Shewanella oneidensis strain MR-1 and Anaeromyxobacter dehalogenans strain 2CP-C grown with soluble and insoluble oxidized metal electron acceptors.	Nissen S, Liu X, Chourey K, Hettich RL, Wagner DD, Pfiffner SM, Loffler FE	Biochem Soc Trans	10.1042/BST20120182	2012	*
Metabolism	Solution and microbial controls on the formation of reduced U(IV) species.	Boyanov MI, Fletcher KE, Kwon MJ, Rui X, O'Loughlin EJ, Loffler FE, Kemner KM	Environ Sci Technol	10.1021/es2014049	2011	*
Metabolism	Comprehensive proteome profiling of the Fe(III)-reducing myxobacterium Anaeromyxobacter dehalogenans 2CP-C during growth with fumarate and ferric citrate.	Chao TC, Kalinowski J, Nyalwidhe J, Hansmeier N	Proteomics	10.1002/pmic.200900687	2010	*
Metabolism	Unique ecophysiology among U(VI)-reducing bacteria as revealed by evaluation of oxygen metabolism in Anaeromyxobacter dehalogenans strain 2CP-C.	Thomas SH, Sanford RA, Amos BK, Leigh MB, Cardenas E, Loffler FE	Appl Environ Microbiol	10.1128/AEM.01854-09	2009	*
Metabolism	Electron donor-dependent radionuclide reduction and nanoparticle formation by Anaeromyxobacter dehalogenans strain 2CP-C.	Marshall MJ, Dohnalkova AC, Kennedy DW, Plymale AE, Thomas SH, Loffler FE, Sanford RA, Zachara JM, Fredrickson JK, Beliaev AS	Environ Microbiol	10.1111/j.1462-2920.2008.01795.x	2009	*
Genetics	Identification of genes conferring arsenic resistance to Escherichia coli from an effluent treatment plant sludge metagenomic library.	Chauhan NS, Ranjan R, Purohit HJ, Kalia VC, Sharma R	FEMS Microbiol Ecol	10.1111/j.1574-6941.2008.00613.x	2008	*
Phylogeny	The mosaic genome of Anaeromyxobacter dehalogenans strain 2CP-C suggests an aerobic common ancestor to the delta-proteobacteria.	Thomas SH, Wagner RD, Arakaki AK, Skolnick J, Kirby JR, Shimkets LJ, Sanford RA, Loffler FE	PLoS One	10.1371/journal.pone.0002103	2008	*
Metabolism	Novel reduction of mercury (II) by mercury-sensitive dissimilatory metal reducing bacteria.	Wiatrowski HA, Ward PM, Barkay T	Environ Sci Technol	10.1021/es061046g	2006	*
Metabolism	Uranium(VI) reduction by Anaeromyxobacter dehalogenans strain 2CP-C.	Wu Q, Sanford RA, Loffler FE	Appl Environ Microbiol	10.1128/AEM.72.5.3608-3614.2006	2006	*
Metabolism	Acetate threshold concentrations suggest varying energy requirements during anaerobic respiration by Anaeromyxobacter dehalogenans.	He Q, Sanford RA	Appl Environ Microbiol	10.1128/AEM.70.11.6940-6943.2004	2004	*
Metabolism	The generation of high biomass from chlororespiring bacteria using a continuous fed-batch bioreactor.	He Q, Sanford RA	Appl Microbiol Biotechnol	10.1007/s00253-004-1591-9	2004	*
Metabolism	Characterization of Fe(III) reduction by chlororespiring Anaeromyxobacter dehalogenans.	He Q, Sanford RA	Appl Environ Microbiol	10.1128/AEM.69.5.2712-2718.2003	2003	*
Metabolism	Induction characteristics of reductive dehalogenation in the ortho-halophenol-respiring bacterium, Anaeromyxobacter dehalogenans.	He Q, Sanford RA	Biodegradation	10.1023/a:1022342421909	2002	*
	Genomic analyses of bacterial porin-cytochrome gene clusters.	Shi L, Fredrickson JK, Zachara JM	Front Microbiol	10.3389/fmicb.2014.00657	2014	*

References

#16015

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21877

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#73269

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID87743.1 )

* These data were automatically processed and therefore are not curated

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Anaeromyxobacter dehalogenans 2CP-C 2CP-C

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