Stigmatella erecta (DSM 16858, ATCC 25191, M26)

Name: Stigmatella erecta (DSM 16858, ATCC 25191, M26)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3708

Type strain

Strain Designation M26

Culture col. no. DSM 16858 ATCC 25191 M26

NCBI tax ID(s) 83460

Special Collections DSMZ

Links

Stigmatella erecta M26 is a mesophilic prokaryote that was isolated from poplar bark.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 38403

ATCC 25191,DSM 16858

@ref 20215

Last LPSN update 2025-12-16 09:47:37

Domain Pseudomonadati

Phylum Pseudomonadota

Class Deltaproteobacteria

Order Myxococcales

Family Archangiaceae

Genus Stigmatella

Species Stigmatella erecta

Full scientific name Stigmatella erecta (Schroeter 1886) McCurdy 1971 (Approved Lists 1980)

Synonyms (1)

"Cystobacter erectus"

BacDive ID	Other strains from **Stigmatella erecta** (70)	Type strain
3709	S. erecta Pd e1, DSM 53670
3710	S. erecta Pd e3, DSM 53671
3711	S. erecta Pd e8, DSM 53672
3712	S. erecta Pd e9, DSM 53673
3713	S. erecta Pd e10, DSM 53674
3714	S. erecta Pd e11, DSM 53675
3715	S. erecta Pd e12, DSM 53676
3716	S. erecta Pd e13, DSM 53677
3717	S. erecta Pd e14, DSM 53678
3718	S. erecta Pd e19, DSM 53679
3719	S. erecta Pd e21, DSM 53680
3720	S. erecta Pd e23, DSM 53681
3721	S. erecta Pd e24, DSM 53682
3722	S. erecta Pd e25, DSM 53683
3723	S. erecta Pd e26, DSM 53684
3724	S. erecta Pd e27, DSM 53685
3725	S. erecta Pd e29, DSM 53686
3726	S. erecta Pd e30, DSM 53687
3727	S. erecta Pd e32, DSM 53688
3728	S. erecta Pd e33, DSM 53689
3729	S. erecta Pd e34, DSM 53690
3730	S. erecta Pd e35, DSM 53691
3731	S. erecta Pd e36, DSM 53692
3732	S. erecta Pd e37, DSM 53693
3733	S. erecta Pd e38, DSM 53694
3734	S. erecta Pd e39, DSM 53695
3735	S. erecta Pd e40, DSM 53696
3736	S. erecta Pd e41, DSM 53697
3737	S. erecta Pd e43, DSM 53698
3738	S. erecta Pd e44, DSM 53699
3739	S. erecta Pd e45, DSM 53700
3740	S. erecta Pd e47, DSM 53701
3741	S. erecta Pd e50, DSM 53702
3742	S. erecta Pd e52, DSM 53703
3743	S. erecta Pd e54, DSM 53704
3744	S. erecta Pd e55, DSM 53705
3745	S. erecta Pd e56, DSM 53706
3746	S. erecta Pd e57, DSM 53707
3747	S. erecta Pd e58, DSM 53708
3748	S. erecta Pd e59, DSM 53709
3749	S. erecta Pd e60, DSM 53710
3750	S. erecta Pd e61, DSM 53711
3751	S. erecta Pd e62, DSM 53712
3752	S. erecta Pd e63, DSM 53713
3753	S. erecta Pd e80, DSM 53714
3754	S. erecta Pd e81, DSM 53715
18454	S. erecta Pd e28,
18455	S. erecta Pd e20,
18464	S. erecta Pd e31,
18474	S. erecta Pd e48,
18475	S. erecta Pd e49,
18476	S. erecta Pd e46,
19888	S. erecta Pd e5,
19889	S. erecta Pd e7,
19890	S. erecta Pd e2,
19891	S. erecta Pd e4,
20230	S. erecta Pd e73,
20231	S. erecta Pd e72,
20232	S. erecta Pd e75,
20233	S. erecta Pd e74,
20234	S. erecta Pd e77,
20235	S. erecta Pd e76,
20238	S. erecta Pd e78,
20277	S. erecta Pd e69,
20279	S. erecta Pd e67,
20281	S. erecta Pd e66,
20282	S. erecta Pd e65,
20283	S. erecta Pd e64,
20285	S. erecta Pd e70,
20287	S. erecta Pd e71,

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	91.476

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
6637	VY/2 AGAR (DSMZ Medium 9)		Medium recipe at MediaDive	Name: VY/2 AGAR (DSMZ Medium 9) Composition: Agar 15.0 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6637	positive	growth	30	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Bark

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
6637	poplar bark	Canada	CAN	North America

Taxonmaps

69479

Global distribution of 16S sequence KF267737 (>99% sequence identity) for Stigmatella from Microbeatlas

Aquatic Samples	2171
Soil Samples	13615
Animal Samples	1422
Plant Samples	2120
Total Samples	19328

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6637	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2693429888 annotated assembly for Stigmatella erecta DSM 16858	contig	GCA_900111745	83460.3	2693429888	83460	65.83

Genome browser: GCA_900111745

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Stigmatella erecta strain ATCC 25191 16S ribosomal RNA gene, partial sequence	DQ768128	1502	83460
20218	Stigmatella erecta strain DSM 16858 16S ribosomal RNA gene, partial sequence	KF267737	1502	83460
6637	Stigmatella erecta partial 16S rRNA gene, type strain DSM 16858T	AJ970180	1534	83460

GC content

@ref	GC-content (mol%)	Method
6637	68.7	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Stigmatella erecta DSM 16858
NCBI: GCA_900111745

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	68.90	no
125439	motility	BacteriaNetⓘ	yes	50.50	no
125439	gram_stain	BacteriaNetⓘ	positive	72.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	73.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Stigmatella erecta strain DSM 16858
PATRIC: 83460.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	91.48	no
125438	anaerobic	anaerobicⓘ	no	92.71	no
125438	aerobic	aerobicⓘ	yes	76.55	no
125438	spore-forming	spore-formingⓘ	no	75.33	no
125438	thermophilic	thermophileⓘ	no	95.35	yes
125438	flagellated	motile2+ⓘ	yes	65.38	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Comparative genomic insight into the myxobacterial carbohydrate-degrading potential.	Saraf N, Sharma G.	Front Microbiol	10.3389/fmicb.2025.1550287	2025
	Approach to analyze the diversity of myxobacteria in soil by semi-nested PCR-denaturing gradient gel electrophoresis (DGGE) based on taxon-specific gene.	Li B, Yao Q, Zhu H.	PLoS One	10.1371/journal.pone.0108877	2014

References

#6637	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16858
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Stigmatella erecta (DSM 16858, ATCC 25191, M26)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900111745

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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