Asaia prunellae (DSM 23028, JCM 25354, T-153)

Name: Asaia prunellae (DSM 23028, JCM 25354, T-153)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 37

Type strain

Strain Designation T-153

Culture col. no. DSM 23028 JCM 25354 T-153

NCBI tax ID(s) 1236502 610245

Special Collections DSMZ JCM

History <- T. Uchimura, Dept. Applied Biology and Chemistry, Tokyo Univ. Agriculture, Japan; T-153 <- R. Suzuki TUA 1310B <-- T. Uchimura T-153.

Links

Asaia prunellae T-153 is a bacterium that was isolated from self-heal Prunella vulgaris.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 376897

JCM 25354,DSM 23028,LMG 26976

@ref 20215

Last LPSN update 2026-02-09 11:17:47

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Acetobacteraceae

Genus Asaia

Species Asaia prunellae

Full scientific name Asaia prunellae Suzuki et al. 2012

BacDive ID	Other strains from **Asaia prunellae** (2)	Type strain
163353	A. prunellae JCM 25423
163354	A. prunellae JCM 25425

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99.333
125439	negative	99.5

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16658	ASAIA GYP MEDIUM (DSMZ Medium 1330)		Medium recipe at MediaDive	Name: ASAIA GYP MEDIUM (DSMZ Medium 1330) Composition: Agar 15.0 g/l Peptone 10.0 g/l Glycerol 10.0 g/l Glucose 10.0 g/l CaCO3 7.0 g/l Yeast extract 5.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16658	positive	growth	28
67770	positive	growth	30

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.4

Observation

67770

Observationquinones: Q-10

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
16658	self-heal Prunella vulgaris	Prunella vulgaris	Akita	Japan	JPN	Asia
67770	Self-heal (Prunella vulgaris)	Prunella vulgaris	Akita	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB485741 (>99% sequence identity) for Asaia from Microbeatlas

Aquatic Samples	4167
Soil Samples	6137
Animal Samples	6615
Plant Samples	4906
Total Samples	21825

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16658	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM61388v1 assembly for Asaia prunellae JCM 25354	contig	GCA_000613885	1236502.8	2585427933	1236502	54.95
66792	Asaia prunellae JCM 25354	contig		1236502.5		1236502	52.8

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16658	Asaia prunellae gene for 16S rRNA, partial sequence, strain: T-153	AB485741	1417		1236502

GC content

@ref	GC-content (mol%)	Method
16658	58.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Asaia prunellae JCM 25354
NCBI: GCA_000613885

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.40	no
125439	motility	BacteriaNetⓘ	yes	81.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	68.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Asaia prunellae JCM 25354
PATRIC: 1236502.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.33	no
125438	anaerobic	anaerobicⓘ	no	93.20	no
125438	spore-forming	spore-formingⓘ	no	88.04	no
125438	aerobic	aerobicⓘ	yes	83.93	no
125438	thermophilic	thermophileⓘ	no	95.73	yes
125438	flagellated	motile2+ⓘ	yes	66.37	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome Features of Asaia sp. W12 Isolated from the Mosquito Anopheles stephensi Reveal Symbiotic Traits.	Chen S, Yu T, Terrapon N, Henrissat B, Walker ED.	Genes (Basel)	10.3390/genes12050752	2021

References

#16658	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23028
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Asaia prunellae (DSM 23028, JCM 25354, T-153)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000613885

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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