Pusillimonas soli (DSM 25264, JCM 16386, KCTC 22455)

Name: Pusillimonas soli (DSM 25264, JCM 16386, KCTC 22455)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 363

Type strain

Strain Designation MJ07

Culture col. no. DSM 25264 JCM 16386 KCTC 22455 MJ07

NCBI tax ID(s) 659016

Special Collections DSMZ JCM KCTC Literature strains

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Pusillimonas soli MJ07 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from farm soil.

Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 404651

KCTC 22455,JCM 16386,DSM 25264

@ref 20215

Last LPSN update 2025-12-16 09:46:50

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Pusillimonas

Species Pusillimonas soli

Full scientific name Pusillimonas soli Lee et al. 2010

Synonyms (1)

Allopusillimonas soli

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
23277	negative	0.7-1.0 µm	0.3-0.5 µm	rod-shaped
67771	negative
125438	negative
125439	negative

Multimedia

@ref:	17962
multimedia content:	DSM_25264.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_25264.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17962	LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)		Medium recipe at MediaDive	Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
17962	positive	growth	28	mesophilic
23277	positive	optimum	30	mesophilic
67770	positive	growth	30	mesophilic
67771	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH
23277	positive	optimum	6.5-7.0
23277	positive	growth	5.0-9.0

Physiology and metabolism

Oxygen tolerance

67771

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation
23277
125439

Observation

67770

Observationquinones: Q-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23277	16808 ChEBI	2-dehydro-D-gluconate	-	builds acid from
23277	16808 ChEBI	2-dehydro-D-gluconate	-	growth
23277	16193 ChEBI	3-hydroxybenzoate	+	assimilation
23277	37054 ChEBI	3-hydroxybutyrate	+	growth
23277	17426 ChEBI	5-dehydro-D-gluconate	-	builds acid from
23277	17426 ChEBI	5-dehydro-D-gluconate	-	growth
23277	30089 ChEBI	acetate	+	growth
23277	17128 ChEBI	adipate	+	assimilation
23277	27613 ChEBI	amygdalin	-	builds acid from
23277	18305 ChEBI	arbutin	+	builds acid from
23277		casein	-	hydrolysis
23277	17057 ChEBI	cellobiose	-	builds acid from
23277	17029 ChEBI	chitin	-	hydrolysis
23277	16947 ChEBI	citrate	+	assimilation
23277	17108 ChEBI	D-arabinose	-	builds acid from
23277	18333 ChEBI	D-arabitol	-	builds acid from
23277	15824 ChEBI	D-fructose	-	builds acid from
23277	28847 ChEBI	D-fucose	-	builds acid from
23277	12936 ChEBI	D-galactose	-	builds acid from
23277	8391 ChEBI	D-gluconate	+	builds acid from
23277	17634 ChEBI	D-glucose	-	growth
23277	17634 ChEBI	D-glucose	+	builds acid from
23277	62318 ChEBI	D-lyxose	-	builds acid from
23277	16899 ChEBI	D-mannitol	-	builds acid from
23277	16899 ChEBI	D-mannitol	-	growth
23277	16024 ChEBI	D-mannose	-	builds acid from
23277	16024 ChEBI	D-mannose	-	growth
23277	16988 ChEBI	D-ribose	+	assimilation
23277	16988 ChEBI	D-ribose	+	builds acid from
23277	17924 ChEBI	D-sorbitol	-	builds acid from
23277	17924 ChEBI	D-sorbitol	+	builds acid from
23277	16443 ChEBI	D-tagatose	-	builds acid from
23277	65327 ChEBI	D-xylose	-	builds acid from
23277	27689 ChEBI	decanoate	-	assimilation
23277	16991 ChEBI	dna	-	hydrolysis
23277	17113 ChEBI	erythritol	-	builds acid from
23277	4853 ChEBI	esculin	-	builds acid from
23277	16813 ChEBI	galactitol	-	builds acid from
23277	28066 ChEBI	gentiobiose	-	builds acid from
23277	24265 ChEBI	gluconate	-	growth
23277	17754 ChEBI	glycerol	+	builds acid from
23277	28087 ChEBI	glycogen	-	builds acid from
23277	28087 ChEBI	glycogen	-	growth
23277	85249 ChEBI	hydroxyethylcellulose	-	hydrolysis
23277	15443 ChEBI	inulin	-	builds acid from
23277	17240 ChEBI	itaconate	+	assimilation
23277	16977 ChEBI	L-alanine	+	assimilation
23277	30849 ChEBI	L-arabinose	-	growth
23277	30849 ChEBI	L-arabinose	+	builds acid from
23277	18403 ChEBI	L-arabitol	-	builds acid from
23277	18287 ChEBI	L-fucose	-	builds acid from
23277	18287 ChEBI	L-fucose	-	growth
23277	15971 ChEBI	L-histidine	+	assimilation
23277	17203 ChEBI	L-proline	+	assimilation
23277	62345 ChEBI	L-rhamnose	-	builds acid from
23277	62345 ChEBI	L-rhamnose	+	builds acid from
23277	17115 ChEBI	L-serine	+	assimilation
23277	17266 ChEBI	L-sorbose	-	builds acid from
23277	65328 ChEBI	L-xylose	-	builds acid from
23277	24996 ChEBI	lactate	+	growth
23277	17716 ChEBI	lactose	-	builds acid from
23277	25115 ChEBI	malate	+	assimilation
23277	15792 ChEBI	malonate	+	assimilation
23277	17306 ChEBI	maltose	-	builds acid from
23277	17306 ChEBI	maltose	-	growth
23277	6731 ChEBI	melezitose	-	builds acid from
23277	28053 ChEBI	melibiose	-	builds acid from
23277	28053 ChEBI	melibiose	-	growth
23277	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from
23277	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
23277	74863 ChEBI	methyl beta-D-xylopyranoside	+	builds acid from
23277	17268 ChEBI	myo-inositol	-	builds acid from
23277	17268 ChEBI	myo-inositol	+	assimilation
23277	506227 ChEBI	N-acetylglucosamine	-	builds acid from
23277	506227 ChEBI	N-acetylglucosamine	-	growth
23277	17632 ChEBI	nitrate	+	reduction
23277	18401 ChEBI	phenylacetate	+	assimilation
23277	17272 ChEBI	propionate	+	assimilation
23277	16634 ChEBI	raffinose	-	builds acid from
23277	15963 ChEBI	ribitol	-	builds acid from
23277	17814 ChEBI	salicin	-	builds acid from
23277	17814 ChEBI	salicin	-	growth
23277	28017 ChEBI	starch	-	builds acid from
23277	28017 ChEBI	starch	-	hydrolysis
23277	9300 ChEBI	suberic acid	+	assimilation
23277	17992 ChEBI	sucrose	-	builds acid from
23277	17992 ChEBI	sucrose	-	growth
23277	27082 ChEBI	trehalose	-	builds acid from
23277	32528 ChEBI	turanose	-	builds acid from
23277	31011 ChEBI	valerate	+	assimilation
23277	37166 ChEBI	xylan	-	hydrolysis
23277	17151 ChEBI	xylitol	-	builds acid from

Enzymes

@ref	Value	Activity	Ec
23277	Acid phosphatase	+	3.1.3.2
23277	Alkaline phosphatase	+	3.1.3.1
23277	alpha-chymotrypsin	-	3.4.21.1
23277	alpha-fucosidase	-	3.2.1.51
23277	alpha-galactosidase	-	3.2.1.22
23277	alpha-glucosidase	-	3.2.1.20
23277	alpha-mannosidase	-	3.2.1.24
23277	beta-galactosidase	-	3.2.1.23
23277	beta-glucosidase	-	3.2.1.21
23277	beta-glucuronidase	-	3.2.1.31
23277	catalase	+	1.11.1.6
23277	cystine arylamidase	-	3.4.11.3
23277	cytochrome oxidase	+	1.9.3.1
23277	esterase (C 4)	+
23277	esterase lipase (C 8)	+
23277	leucine arylamidase	+	3.4.11.1
23277	lipase (C 14)	-
23277	N-acetyl-beta-glucosaminidase	-	3.2.1.52
23277	naphthol-AS-BI-phosphohydrolase	+
23277	trypsin	-	3.4.21.4
23277	valine arylamidase	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Field
#Engineered	#Food production	#Aquaculture

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
17962	farm soil	near Daejeon	Republic of Korea	KOR	Asia
67770	Farm soil near Daejeon		Republic of Korea	KOR	Asia
67771	From soil		Republic of Korea	KOR	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17962	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM415344v1 assembly for Allopusillimonas soli KCTC 22455	scaffold	GCA_004153445	659016.4	2891629496	659016	75.6
66792	ASM1341633v1 assembly for Allopusillimonas soli DSM 25264	contig	GCA_013416335	659016.5	8066638106	659016	70.36

Genome browser: GCA_004153445

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17962	Pusillimonas soli strain MJ07 16S ribosomal RNA gene, partial sequence	GQ241322	1454		659016

GC content

@ref	GC-content (mol%)
17962	59.4
23277	59.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Allopusillimonas soli KCTC 22455
NCBI: GCA_004153445

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.40	no
125439	motility	BacteriaNetⓘ	yes	84.10	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	77.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pusillimonas soli strain DSM 25264
PATRIC: 659016.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.81	yes
125438	anaerobic	anaerobicⓘ	no	98.11	yes
125438	spore-forming	spore-formingⓘ	no	83.66	no
125438	aerobic	aerobicⓘ	yes	89.69	yes
125438	thermophilic	thermophileⓘ	no	93.88	yes
125438	flagellated	motile2+ⓘ	yes	74.85	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pusillimonas soli sp. nov., isolated from farm soil.	Lee M, Woo SG, Chae M, Ten LN	Int J Syst Evol Microbiol	10.1099/ijs.0.020404-0	2009

References

#17962	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25264
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23277	Myungjin Lee, Sung-Geun Woo, Myoungsoo Chae, Leonid N. Ten: Pusillimonas soli sp. nov., isolated from farm soil. IJSEM 60: 2326 - 2330 2010 ( DOI 10.1099/ijs.0.020404-0 , PubMed 19933592 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pusillimonas soli (DSM 25264, JCM 16386, KCTC 22455)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004153445

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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