Name: Kerstersia gyiorum 3925
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 354

Type strain:

Species: Kerstersia gyiorum

Strain Designation: 3925, R-20010

Culture col. no.: DSM 16618, CCUG 47000, LMG 5906, CIP 108214, Api 184-2-84

Strain history: CIP <- 2003, CCUG <- 2002, T. Coenye, Ghent, Belgium: strain R-20010 <- D. Monget, Api, France: strain Api 184-2-84

NCBI tax ID(s): 206506 (species)

SI-ID 780

LMG 5906, CCUG 47000, DSM 16618, CCM 7184, CIP 108214

Other strains from Kerstersia gyiorum

K. gyiorum CCUG 24721, LMG 15539
K. gyiorum CCUG 24726, LMG 15542, LMG 5895
K. gyiorum CCUG 34029, LMG 15979
K. gyiorum CCUG 47381

Section

Kerstersia gyiorum 3925 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from ankle wound.

coccus-shaped
Gram-negative
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Alcaligenaceae*
	Genus	*Kerstersia*
	Species	**Kerstersia gyiorum**
	Full Scientific Name (LPSN)	Kerstersia gyiorum Coenye et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #23271]	Gram stain	negative
[Ref.: #119756]	Gram stain	negative

[Ref.: #23271]	Cell length	1-2 µm

[Ref.: #23271]	Cell shape	coccus-shaped
[Ref.: #119756]	Cell shape	rod-shaped

[Ref.: #119756]	Motility	yes

[Ref.: #23271]	Colony color	white to light brown
[Ref.: #23271]	Cultivation medium used	nutrient agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6526]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #6526]

Culture medium growth

[Ref.: #6526]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6526]

Culture medium composition

expand / minimize

[Ref.: #23271]

Culture medium

Nutrient agar (NA)

[Ref.: #23271]

Culture medium growth

[Ref.: #32904]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #32904]

Culture medium growth

[Ref.: #32904]

Culture medium composition

expand / minimize

[Ref.: #119756]

Culture medium

CIP Medium 72

[Ref.: #119756]

Culture medium growth

[Ref.: #119756]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6526]		growth	37 °C
[Ref.: #23271]		growth	28-42 °C
[Ref.: #32904]		growth	30 °C
[Ref.: #57446]		growth	30-37 °C
[Ref.: #119756]		growth	15-41 °C
[Ref.: #119756]	no	growth	5 °C
[Ref.: #119756]	no	growth	45 °C

[Ref.: #6526]	Temperature range	mesophilic
[Ref.: #32904]	Temperature range	mesophilic
[Ref.: #57446]	Temperature range	mesophilic
[Ref.: #119756]	Temperature range	psychrophilic
[Ref.: #119756]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #57446]	Oxygen tolerance	aerobe
[Ref.: #119756]	Oxygen tolerance	obligate aerobe

	Salt	Tested relation		Salt conc.
[Ref.: #119756]	NaCl		growth	0-6	%
[Ref.: #119756]	NaCl	no	growth	8	%
[Ref.: #119756]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23271]	(R)-mandelate ChEBI	-	assimilation
[Ref.: #23271]	(S)-mandelic acid ChEBI	-	assimilation
[Ref.: #23271]	2-aminobenzoate ChEBI	+	assimilation
[Ref.: #23271]	2-aminopentanoic acid ChEBI	-	assimilation
[Ref.: #23271]	2-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #23271]	3-aminobenzoate ChEBI	-	assimilation
[Ref.: #23271]	3-aminobutyrate ChEBI	-	assimilation
[Ref.: #23271]	3-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #23271]	3-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #23271]	3-hydroxybutyrate ChEBI	+	assimilation
[Ref.: #23271]	4-aminobenzoate ChEBI	+	assimilation
[Ref.: #23271]	4-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #23271]	4-hydroxybenzoate ChEBI	+	assimilation
[Ref.: #23271]	5-aminovaleric acid ChEBI	-	assimilation
[Ref.: #23271]	acetamide ChEBI	-	assimilation
[Ref.: #23271]	acetate ChEBI	+	assimilation
[Ref.: #23271]	aconitate ChEBI	-	assimilation
[Ref.: #23271]	adipate ChEBI	-	assimilation
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #23271]	amygdalin ChEBI	-	assimilation
[Ref.: #23271]	arbutin ChEBI	-	assimilation
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #23271]	azelaate ChEBI	-	assimilation
[Ref.: #23271]	benzoate ChEBI	-	assimilation
[Ref.: #23271]	benzylamine ChEBI	-	assimilation
[Ref.: #23271]	betaine ChEBI	-	assimilation
[Ref.: #23271]	butyrate ChEBI	+	assimilation
[Ref.: #23271]	citraconate ChEBI	-	assimilation
[Ref.: #23271]	citrate ChEBI	+	assimilation
[Ref.: #119756]	citrate ChEBI	+	carbon source
[Ref.: #23271]	creatine ChEBI	-	assimilation
[Ref.: #23271]	D-alanine ChEBI	+	assimilation
[Ref.: #23271]	D-arabinose ChEBI	-	assimilation
[Ref.: #23271]	D-arabitol ChEBI	-	assimilation
[Ref.: #23271]	D-fructose ChEBI	-	assimilation
[Ref.: #23271]	D-fucose ChEBI	-	assimilation
[Ref.: #23271]	D-glucose ChEBI	-	assimilation
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #23271]	D-lyxose ChEBI	-	assimilation
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #23271]	D-mannose ChEBI	-	assimilation
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #23271]	D-tagatose ChEBI	-	assimilation
[Ref.: #23271]	D-tartrate ChEBI	-	assimilation
[Ref.: #23271]	D-tryptophan ChEBI	-	assimilation
[Ref.: #23271]	D-xylose ChEBI	-	assimilation
[Ref.: #23271]	decanoate ChEBI	+	assimilation
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #23271]	erythritol ChEBI	-	assimilation
[Ref.: #23271]	esculin ChEBI	-	assimilation
[Ref.: #119756]	esculin ChEBI	-	hydrolysis
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #23271]	ethanolamine ChEBI	-	assimilation
[Ref.: #23271]	ethylamine ChEBI	-	assimilation
[Ref.: #23271]	fumarate ChEBI	+	assimilation
[Ref.: #23271]	galactitol ChEBI	-	assimilation
[Ref.: #23271]	galactose ChEBI	-	assimilation
[Ref.: #23271]	gamma-aminobutyric acid ChEBI	+	assimilation
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #23271]	glucosamine ChEBI	-	assimilation
[Ref.: #23271]	glutaric acid ChEBI	-	assimilation
[Ref.: #23271]	glycerate ChEBI	-	assimilation
[Ref.: #23271]	glycine ChEBI	-	assimilation
[Ref.: #23271]	glycogen ChEBI	-	assimilation
[Ref.: #23271]	glycolate ChEBI	-	assimilation
[Ref.: #23271]	heptanoate ChEBI	+	assimilation
[Ref.: #119756]	hippurate ChEBI	-	hydrolysis
[Ref.: #23271]	histamine ChEBI	-	assimilation
[Ref.: #23271]	inulin ChEBI	-	assimilation
[Ref.: #23271]	isobutyrate ChEBI	-	assimilation
[Ref.: #23271]	isophthalate ChEBI	-	assimilation
[Ref.: #23271]	isovalerate ChEBI	-	assimilation
[Ref.: #23271]	kynurenine ChEBI	+	assimilation
[Ref.: #23271]	L-alanine ChEBI	+	assimilation
[Ref.: #23271]	L-arabinose ChEBI	-	assimilation
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #23271]	L-arabitol ChEBI	-	assimilation
[Ref.: #23271]	L-arginine ChEBI	-	assimilation
[Ref.: #23271]	L-aspartate ChEBI	+	assimilation
[Ref.: #23271]	L-citrulline ChEBI	-	assimilation
[Ref.: #23271]	L-cysteine ChEBI	-	assimilation
[Ref.: #23271]	L-fucose ChEBI	-	assimilation
[Ref.: #23271]	L-glutamate ChEBI	+	assimilation
[Ref.: #23271]	L-histidine ChEBI	-	assimilation
[Ref.: #23271]	L-isoleucine ChEBI	-	assimilation
[Ref.: #23271]	L-leucine ChEBI	-	assimilation
[Ref.: #23271]	L-lysine ChEBI	-	assimilation
[Ref.: #23271]	L-methionine ChEBI	-	assimilation
[Ref.: #23271]	L-ornithine ChEBI	+	assimilation
[Ref.: #23271]	L-phenylalanine ChEBI	+	assimilation
[Ref.: #23271]	L-proline ChEBI	+	assimilation
[Ref.: #23271]	L-rhamnose ChEBI	-	assimilation
[Ref.: #23271]	L-serine ChEBI	-	assimilation
[Ref.: #23271]	L-sorbose ChEBI	-	assimilation
[Ref.: #23271]	L-tartrate ChEBI	-	assimilation
[Ref.: #23271]	L-threonine ChEBI	-	assimilation
[Ref.: #23271]	L-tyrosine ChEBI	+	assimilation
[Ref.: #23271]	L-valine ChEBI	-	assimilation
[Ref.: #23271]	L-xylose ChEBI	-	assimilation
[Ref.: #23271]	lactate ChEBI	+	assimilation
[Ref.: #23271]	lactose ChEBI	-	assimilation
[Ref.: #23271]	malate ChEBI	-	assimilation
[Ref.: #23271]	malate ChEBI	+	assimilation
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #23271]	malonate ChEBI	-	assimilation
[Ref.: #119756]	malonate ChEBI	-	assimilation
[Ref.: #23271]	maltose ChEBI	-	assimilation
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #23271]	mannitol ChEBI	-	assimilation
[Ref.: #23271]	melezitose ChEBI	-	assimilation
[Ref.: #23271]	melibiose ChEBI	-	assimilation
[Ref.: #23271]	mesaconate ChEBI	-	assimilation
[Ref.: #23271]	meso-tartrate ChEBI	-	assimilation
[Ref.: #23271]	methyl alpha-D-glucopyranoside ChEBI	-	assimilation
[Ref.: #23271]	methyl alpha-D-mannoside ChEBI	-	assimilation
[Ref.: #23271]	methyl beta-D-xylopyranoside ChEBI	-	assimilation
[Ref.: #23271]	myo-inositol ChEBI	-	assimilation
[Ref.: #23271]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #119756]	nitrate ChEBI	-	builds gas from
[Ref.: #119756]	nitrate ChEBI	-	reduction
[Ref.: #119756]	nitrate ChEBI	-	respiration
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #119756]	nitrite ChEBI	-	builds gas from
[Ref.: #119756]	nitrite ChEBI	-	reduction
[Ref.: #23271]	nonanoate ChEBI	+	assimilation
[Ref.: #23271]	octanoate ChEBI	+	assimilation
[Ref.: #23271]	oxalate ChEBI	-	assimilation
[Ref.: #23271]	pentan-1-amine ChEBI	+	assimilation
[Ref.: #23271]	phenylacetate ChEBI	+	assimilation
[Ref.: #23271]	phthalate ChEBI	-	assimilation
[Ref.: #23271]	pimelate ChEBI	-	assimilation
[Ref.: #23271]	propionate ChEBI	+	assimilation
[Ref.: #23271]	putrescine ChEBI	-	assimilation
[Ref.: #23271]	pyruvate ChEBI	+	assimilation
[Ref.: #23271]	raffinose ChEBI	-	assimilation
[Ref.: #23271]	ribitol ChEBI	-	assimilation
[Ref.: #23271]	ribose ChEBI	-	assimilation
[Ref.: #23271]	salicin ChEBI	-	assimilation
[Ref.: #23271]	sarcosine ChEBI	-	assimilation
[Ref.: #23271]	sebacic acid ChEBI	-	assimilation
[Ref.: #23271]	sorbitol ChEBI	-	assimilation
[Ref.: #23271]	spermine ChEBI	-	assimilation
[Ref.: #23271]	starch ChEBI	-	assimilation
[Ref.: #23271]	suberic acid ChEBI	-	assimilation
[Ref.: #23271]	succinate ChEBI	+	assimilation
[Ref.: #23271]	sucrose ChEBI	-	assimilation
[Ref.: #23271]	terephthalate ChEBI	-	assimilation
[Ref.: #23271]	trehalose ChEBI	-	assimilation
[Ref.: #23271]	trigonelline ChEBI	-	assimilation
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #23271]	turanose ChEBI	-	assimilation
[Ref.: #23271]	urea ChEBI	-	assimilation
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #23271]	valerate ChEBI	+	assimilation
[Ref.: #23271]	xylitol ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #119756]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #119756]		indole ChEBI	no
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #119756]	acetoin ChEBI	-
[Ref.: #119756]	glucose ChEBI		-
[Ref.: #68369]	indole ChEBI			-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #119756]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #119756]	amylase	-
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #23271]	beta-galactosidase	-	3.2.1.23
[Ref.: #119756]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API 20NE
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119756]	caseinase	-	3.4.21.50
[Ref.: #23271]	catalase	+	1.11.1.6
[Ref.: #119756]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #23271]	cytochrome oxidase	-	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	-	1.9.3.1	* from API 20NE
[Ref.: #119756]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #119756]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #119756]	gelatinase	-
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #119756]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #119756]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119756]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119756]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119756]	oxidase	-
[Ref.: #119756]	phenylalanine ammonia-lyase	+	4.3.1.24
[Ref.: #119756]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119756]	tryptophan deaminase	+
[Ref.: #119756]	tween esterase	-
[Ref.: #23271]	urease	-	3.5.1.5
[Ref.: #119756]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #6526]	23761	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	+	+	-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #119756]	2650	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	+	+	+	-	-	+	-	-	+	+	+	+	-	-	-	+	-	-	-	-	+	-	+	+	+	+	+	+	-	-	-	-	+	-	-	+	+	+	+	+	+	-	-	+	+	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119756]	10991	-	-	+	-	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	gallate degradation	100	5 of 5
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	quinate degradation	100	2 of 2
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	butanoate fermentation	100	4 of 4
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	aerobactin biosynthesis	100	1 of 1
[Ref.: #66794]	taurine degradation	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	ubiquinone biosynthesis	100	7 of 7
[Ref.: #66794]	citric acid cycle	92.86	13 of 14
[Ref.: #66794]	leucine metabolism	92.31	12 of 13
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	4-hydroxyphenylacetate degradation	90	9 of 10
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	3-phenylpropionate degradation	86.67	13 of 15
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	85.71	12 of 14
[Ref.: #66794]	glutamate and glutamine metabolism	85.71	24 of 28
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	alanine metabolism	82.76	24 of 29
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	tryptophan metabolism	78.95	30 of 38
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	phenol degradation	75	15 of 20
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	vitamin B6 metabolism	72.73	8 of 11
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	propionate fermentation	70	7 of 10
[Ref.: #66794]	urea cycle	69.23	9 of 13
[Ref.: #66794]	purine metabolism	69.15	65 of 94
[Ref.: #66794]	cysteine metabolism	66.67	12 of 18
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	66.67	6 of 9
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	histidine metabolism	65.52	19 of 29
[Ref.: #66794]	oxidative phosphorylation	64.84	59 of 91
[Ref.: #66794]	glutathione metabolism	64.29	9 of 14
[Ref.: #66794]	tyrosine metabolism	64.29	9 of 14
[Ref.: #66794]	pentose phosphate pathway	63.64	7 of 11
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	androgen and estrogen metabolism	62.5	10 of 16
[Ref.: #66794]	C4 and CAM-carbon fixation	62.5	5 of 8
[Ref.: #66794]	lysine metabolism	61.9	26 of 42
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	non-pathway related	60.53	23 of 38
[Ref.: #66794]	glycine betaine biosynthesis	60	3 of 5
[Ref.: #66794]	vitamin K metabolism	60	3 of 5
[Ref.: #66794]	cellulose degradation	60	3 of 5
[Ref.: #66794]	arginine metabolism	58.33	14 of 24
[Ref.: #66794]	lipid metabolism	58.06	18 of 31
[Ref.: #66794]	degradation of sugar alcohols	56.25	9 of 16
[Ref.: #66794]	degradation of sugar acids	56	14 of 25
[Ref.: #66794]	4-hydroxymandelate degradation	55.56	5 of 9
[Ref.: #66794]	pyrimidine metabolism	55.56	25 of 45
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	glycolysis	52.94	9 of 17
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	glycogen biosynthesis	50	2 of 4
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	polyamine pathway	47.83	11 of 23
[Ref.: #66794]	reductive acetyl coenzyme A pathway	42.86	3 of 7
[Ref.: #66794]	carotenoid biosynthesis	40.91	9 of 22
[Ref.: #66794]	glycogen metabolism	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	ethylmalonyl-CoA pathway	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	cholesterol biosynthesis	36.36	4 of 11
[Ref.: #66794]	d-xylose degradation	36.36	4 of 11
[Ref.: #66794]	metabolism of disaccharids	36.36	4 of 11
[Ref.: #66794]	degradation of pentoses	35.71	10 of 28
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	35.29	6 of 17
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	degradation of hexoses	33.33	6 of 18
[Ref.: #66794]	allantoin degradation	33.33	3 of 9
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	30.77	4 of 13
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	ascorbate metabolism	27.27	6 of 22
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	phenylpropanoid biosynthesis	23.08	3 of 13
[Ref.: #66794]	arachidonic acid metabolism	22.22	4 of 18
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6526]	Sample type/isolated from	ankle wound
[Ref.: #6526]	Country	USA
[Ref.: #6526]	Country ISO 3 Code	USA
[Ref.: #6526]	Continent	North America

[Ref.: #23271]	Sample type/isolated from	human ankle wound

[Ref.: #57446]	Sample type/isolated from	Human wound,ankle

[Ref.: #119756]	Sample type/isolated from	Human, Wound, ankle
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Other	#Wound
#Host Body-Site	#Limb	#Ankle

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY131213 (>99% sequence identity) for Kerstersia gyiorum from Microbeatlas

Aquatic Samples	1161
Soil Samples	520
Animal Samples	732
Plant Samples	169
Total Samples	2582

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6526]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #119756]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6526]	Alcaligenes sp. LMG 5906 16S ribosomal RNA gene, partial sequence	AY131213	1414	ENA	206506 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Kerstersia gyiorum DSM 16618	GCA_004216755	scaffold	GenBank	206506 tax ID	*
[Ref.: #66792]	Kerstersia gyiorum CCUG 47000	GCA_008801725	contig	GenBank	206506 tax ID	*
[Ref.: #66792]	Kerstersia gyiorum strain CCUG 47000	206506.12	wgs	PATRIC	206506 tax ID	*
[Ref.: #66792]	Kerstersia gyiorum strain DSM 16618	206506.8	wgs	PATRIC	206506 tax ID	*
[Ref.: #66792]	Kerstersia gyiorum DSM 16618	2799112210	draft	JGI IMG/M	206506 tax ID	*

[Ref.: #23271]

GC-content

62.9 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kerstersia gyiorum DSM 16618 NCBI: GCA_004216755.1
[Ref.: #69480]	motile	yes	86.314	no
[Ref.: #69480]	flagellated	no	51.841	no
[Ref.: #69480]	gram-positive	no	97.745	yes
[Ref.: #69480]	anaerobic	no	96.217	no
[Ref.: #69480]	aerobic	yes	75.463	no
[Ref.: #69480]	halophile	no	79.511	no
[Ref.: #69480]	spore-forming	no	95.674	no
[Ref.: #69480]	glucose-util	no	81.197	yes
[Ref.: #69480]	thermophile	no	99.715	yes
[Ref.: #69480]	glucose-ferment	no	84.952	no

Availability in culture collections External links

[Ref.: #6526]

Culture collection no.

DSM 16618, CCUG 47000, LMG 5906, CIP 108214, Api 184-2-84

[Ref.: #70034]

SI-ID 780

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Algicoccus marinus gen. nov. sp. nov., a marine bacterium isolated from the surface of brown seaweed Laminaria japonica.	Ying JJ, Zhang SL, Huang CY, Xu L, Zhao Z, Wu M, Sun C	Arch Microbiol	10.1007/s00203-019-01664-6	2019	*
Phylogeny	Kerstersia gyiorum gen. nov., sp. nov., a novel Alcaligenes faecalis-like organism isolated from human clinical samples, and reclassification of Alcaligenes denitrificans Ruger and Tan 1983 as Achromobacter denitrificans comb. nov.	Coenye T, Vancanneyt M, Cnockaert MC, Falsen E, Swings J, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.02609-0	2003	*

References

#6526

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16618

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23271

Tom Coenye, Marc Vancanneyt, Margo C. Cnockaert, Enevold Falsen, Jean Swings, Peter Vandamme: Kerstersia gyiorum gen. nov., sp. nov., a novel Alcaligenes faecalis-like organism isolated from human clinical samples, and reclassification of Alcaligenes denitrificans Rüger and Tan 1983 as Achromobacter denitrificans comb. nov.. IJSEM 53: 1825 - 1831 2003 ( DOI 10.1099/ijs.0.02609-0 , PubMed 14657111 )

#32904 ; Curators of the CIP;
#57446 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47000

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#70034

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID780.1 )

#119756 Collection of Institut Pasteur ; Curators of the CIP; CIP 108214
* These data were automatically processed and therefore are not curated

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Kerstersia gyiorum DSM 16618

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