Cystobacter ferrugineus (DSM 52764, Cb fe23)

Name: Cystobacter ferrugineus (DSM 52764, Cb fe23)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3359

Type strain

Strain Designation Cb fe23

Culture col. no. DSM 52764 Cb fe23

NCBI tax ID(s) 83449

Special Collections DSMZ Reichenbach collection

History <- H. Reichenbach, GBF; Cb fe23 <- W. Dawid, Univ. Bonn

Links

Cystobacter ferrugineus Cb fe23 is a bacterium that was isolated from soil.

Bacteria

Name and taxonomic classification

SI-ID 215809

DSM 52764

@ref 20215

Last LPSN update 2026-02-09 11:18:29

Domain Bacteria

Phylum Pseudomonadota

Class Deltaproteobacteria

Order Myxococcales

Family Archangiaceae

Genus Cystobacter

Species Cystobacter ferrugineus

Full scientific name Cystobacter ferrugineus (Krzemieniewska and Krzemieniewski 1927) McCurdy 1970 (Approved Lists 1980)

Synonyms (1)

"Polyangium ferrugineum"

BacDive ID	Other strains from **Cystobacter ferrugineus** (32)	Type strain
3339	C. ferrugineus Cb fe18, DSM 14716, JCM 12624 (type strain)
3340	C. ferrugineus Cb fe37, DSM 14717
3341	C. ferrugineus Cb fe29, DSM 52770
3342	C. ferrugineus Cb fe30, DSM 52771
3343	C. ferrugineus Cb fe33, DSM 52772
3344	C. ferrugineus Cb fe34, DSM 52773
3345	C. ferrugineus Cb fe35, DSM 52774
3346	C. ferrugineus Cb fe36, DSM 52775
3347	C. ferrugineus Cb fe38, DSM 52776
3348	C. ferrugineus Cb fe39, DSM 52777
3349	C. ferrugineus Cb fe3, DSM 52754
3350	C. ferrugineus Cb fe4, DSM 52755
3351	C. ferrugineus Cb fe8, DSM 52756
3352	C. ferrugineus Cb fe9, DSM 52757
3353	C. ferrugineus Cb fe10, DSM 52758
3354	C. ferrugineus Cb fe13, DSM 52759
3355	C. ferrugineus Cb fe14, DSM 52760
3356	C. ferrugineus Cb fe15, DSM 52761
3357	C. ferrugineus Cb fe16, DSM 52762
3358	C. ferrugineus Cb fe17, DSM 52763
3360	C. ferrugineus Cb fe25, DSM 52766
3361	C. ferrugineus Cb fe26, DSM 52767
3362	C. ferrugineus Cb fe27, DSM 52768
3363	C. ferrugineus Cb fe28, DSM 52769
3364	C. ferrugineus Cb fe40, DSM 52778
3365	C. ferrugineus Cb fe41, DSM 52779
3366	C. ferrugineus Cb fe42, DSM 52780
3367	C. ferrugineus Cb fe44, DSM 52782
3368	C. ferrugineus Cb fe46, DSM 52783
3369	C. ferrugineus Cb fe47, DSM 52784
3370	C. ferrugineus Cb fe48, DSM 52785
3371	C. ferrugineus Cb fe49, DSM 52786

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	94

Multimedia

@ref:	14475
multimedia content:	DSM_52764.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_52764.jpg
caption:	fruiting bodies on agar medium 9
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
14475	VY/2 AGAR (DSMZ Medium 9)		Medium recipe at MediaDive	Name: VY/2 AGAR (DSMZ Medium 9) Composition: Agar 15.0 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
14475	positive	growth	28

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
14475	soil	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
14475	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	BV-BRC accession	NCBI tax ID	Score
66792	Cystobacter ferrugineus strain Cbfe23	contig	83449.3	83449	59.2

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Cystobacter ferrugineus strain Cbfe23
PATRIC: 83449.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	57.10	no
125439	motility	BacteriaNetⓘ	no	78.30	no
125439	gram_stain	BacteriaNetⓘ	positive	94.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	84.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Cystobacter ferrugineus strain Cbfe23
PATRIC: 83449.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	87.50	no
125438	anaerobic	anaerobicⓘ	no	92.13	no
125438	aerobic	aerobicⓘ	yes	74.41	no
125438	spore-forming	spore-formingⓘ	no	68.32	no
125438	thermophilic	thermophileⓘ	no	92.36	no
125438	flagellated	motile2+ⓘ	yes	67.36	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Draft Genome Sequence of Cystobacter ferrugineus Strain Cbfe23.	Akbar S, Dowd SE, Stevens DC.	Genome Announc	10.1128/genomea.01601-16	2017
	Differential response to prey quorum signals indicates predatory specialization of myxobacteria and ability to predate Pseudomonas aeruginosa.	Akbar S, Phillips KE, Misra SK, Sharp JS, Stevens DC.	Environ Microbiol	10.1111/1462-2920.15812	2022
Genetics	Functional genomics study of Pseudomonas putida to determine traits associated with avoidance of a myxobacterial predator.	Akbar S, Stevens DC.	Sci Rep	10.1038/s41598-021-96046-8	2021
	Myxobacterial Response to Methyljasmonate Exposure Indicates Contribution to Plant Recruitment of Micropredators.	Adaikpoh BI, Akbar S, Albataineh H, Misra SK, Sharp JS, Stevens DC.	Front Microbiol	10.3389/fmicb.2020.00034	2020

References

#14475	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 52764
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Cystobacter ferrugineus (DSM 52764, Cb fe23)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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