Name: Owenweeksia hongkongensis DSM 17368
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 3250

Type strain:

Species: Owenweeksia hongkongensis

Culture col. no.: DSM 17368, JCM 12287, NRRL B-23963, UST 20020801, CIP 108786

Strain history: CIP <- 2005, JCM <- 2003, K.W.K. Lau: strain UST20020801

NCBI tax ID(s): 926562 (strain), 253245 (species)

SI-ID 138997

JCM 12287, NRRL B-23963, CIP 108786, DSM 17368

Special Collections

Section

When using BacDive for research please cite our paper

Owenweeksia hongkongensis DSM 17368 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from sea water .

colony-forming
Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Schleiferiaceae*
	Genus	*Owenweeksia*
	Species	**Owenweeksia hongkongensis**
	Full Scientific Name (LPSN)	Owenweeksia hongkongensis Lau et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31262]	Gram stain	negative
[Ref.: #27583]	Gram stain	negative
[Ref.: #119963]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %96.933
[Ref.: #125439]	Gram stain	negative Confidence in %98.7

[Ref.: #31262]	Cell length	2.25 µm
[Ref.: #27583]	Cell length	0.5-4 µm

[Ref.: #31262]	Cell width	0.4 µm
[Ref.: #27583]	Cell width	0.3-0.5 µm

[Ref.: #31262]	Cell shape	rod-shaped
[Ref.: #27583]	Cell shape	rod-shaped
[Ref.: #119963]	Cell shape	rod-shaped

[Ref.: #31262]	Motility	yes
[Ref.: #27583]	Motility	yes
[Ref.: #119963]	Motility	no

[Ref.: #27583]	Flagellum arrangement	gliding

[Ref.: #27583]	Colony color	orange
[Ref.: #27583]	Colony shape	circular

[Ref.: #31262]	Pigment production	yes
[Ref.: #27583]	Pigment production	yes
[Ref.: #27583]	Pigment name	Carotenoids

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6838]

Culture medium

YPS MEDIUM (DSMZ Medium 1168)

[Ref.: #6838]

Culture medium growth

[Ref.: #6838]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6838]

Culture medium composition

expand / minimize

[Ref.: #34970]

Culture medium

Marine agar (MA)

[Ref.: #34970]

Culture medium growth

[Ref.: #34970]

Culture medium composition

expand / minimize

[Ref.: #119963]

Culture medium

CIP Medium 13

[Ref.: #119963]

Culture medium growth

[Ref.: #119963]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #6838]	growth	30 °C
[Ref.: #27583]	optimum	25-33 °C
[Ref.: #27583]	growth	4-37 °C
[Ref.: #31262]	growth	04-37 °C
[Ref.: #31262]	optimum	29 °C
[Ref.: #34970]	growth	30 °C
[Ref.: #67770]	growth	30 °C

		pH
[Ref.: #31262]	optimum	7
[Ref.: #27583]	optimum	6.0-8.0
[Ref.: #31262]	growth	5.2-9.0
[Ref.: #27583]	growth	5.2-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31262]	Oxygen tolerance	aerobe
[Ref.: #27583]	Oxygen tolerance	aerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %96.4

[Ref.: #31262]	Ability of spore formation	no
[Ref.: #27583]	Ability of spore formation	no
[Ref.: #125438]	Ability of spore formation	no Confidence in %92.5
[Ref.: #125439]	Ability of spore formation	no Confidence in %94.8

[Ref.: #27583]

Halophily / tolerance level

halophilic

	Salt		Salt conc.
[Ref.: #31262]	NaCl	growth	1.0-7.5	%
[Ref.: #31262]	NaCl	optimum	4.25	%
[Ref.: #27583]	NaCl	growth	1-7.5	%(w/v)

[Ref.: #67770]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #27583]	agar ChEBI	-	assimilation
[Ref.: #27583]	alginate ChEBI	-	assimilation
[Ref.: #27583]	amygdalin ChEBI	-	assimilation
[Ref.: #27583]	arbutin ChEBI	-	assimilation
[Ref.: #27583]	casein	-	assimilation
[Ref.: #27583]	cellobiose ChEBI	-	assimilation
[Ref.: #27583]	crab shell chitin	-	assimilation
[Ref.: #27583]	D-arabinose ChEBI	-	assimilation
[Ref.: #27583]	D-arabitol ChEBI	-	assimilation
[Ref.: #27583]	D-fructose ChEBI	-	assimilation
[Ref.: #27583]	D-fucose ChEBI	-	assimilation
[Ref.: #27583]	D-galactose ChEBI	-	assimilation
[Ref.: #27583]	D-galactose ChEBI	-	fermentation
[Ref.: #27583]	D-glucose ChEBI	-	assimilation
[Ref.: #27583]	D-lyxose ChEBI	-	assimilation
[Ref.: #27583]	D-mannitol ChEBI	-	fermentation
[Ref.: #27583]	D-mannitol ChEBI	-	assimilation
[Ref.: #27583]	D-mannose ChEBI	-	assimilation
[Ref.: #27583]	D-ribose ChEBI	-	assimilation
[Ref.: #27583]	D-sorbitol ChEBI	-	assimilation
[Ref.: #27583]	D-sorbitol ChEBI	-	fermentation
[Ref.: #27583]	D-tagatose ChEBI	-	assimilation
[Ref.: #27583]	D-trehalose ChEBI	-	assimilation
[Ref.: #27583]	D-xylose ChEBI	-	assimilation
[Ref.: #27583]	dextran ChEBI	-	assimilation
[Ref.: #27583]	dextran ChEBI	-	fermentation
[Ref.: #27583]	dna ChEBI	-	assimilation
[Ref.: #27583]	erythritol ChEBI	-	assimilation
[Ref.: #27583]	esculin ChEBI	-	assimilation
[Ref.: #27583]	ferric citrate ChEBI	-	assimilation
[Ref.: #27583]	galactitol ChEBI	-	assimilation
[Ref.: #27583]	gelatin ChEBI	+	assimilation
[Ref.: #27583]	gentiobiose ChEBI	-	assimilation
[Ref.: #27583]	glucose ChEBI	-	assimilation
[Ref.: #27583]	glucose ChEBI	-	fermentation
[Ref.: #27583]	glycerol 3-phosphate ChEBI	-	assimilation
[Ref.: #27583]	glycogen ChEBI	-	assimilation
[Ref.: #27583]	hydroxyethylcellulose ChEBI	-	assimilation
[Ref.: #27583]	L-arabinose ChEBI	-	assimilation
[Ref.: #27583]	L-arabitol ChEBI	-	assimilation
[Ref.: #27583]	L-fucose ChEBI	-	assimilation
[Ref.: #27583]	L-rhamnose ChEBI	-	assimilation
[Ref.: #27583]	L-sorbose ChEBI	-	assimilation
[Ref.: #27583]	L-xylose ChEBI	-	assimilation
[Ref.: #27583]	lactose ChEBI	-	assimilation
[Ref.: #27583]	maltose ChEBI	-	assimilation
[Ref.: #27583]	maltose ChEBI	-	fermentation
[Ref.: #27583]	melezitose ChEBI	-	assimilation
[Ref.: #27583]	melibiose ChEBI	-	assimilation
[Ref.: #27583]	methyl alpha-D-glucopyranoside ChEBI	-	assimilation
[Ref.: #27583]	methyl alpha-D-mannoside ChEBI	-	assimilation
[Ref.: #27583]	methyl beta-D-xylopyranoside ChEBI	-	assimilation
[Ref.: #27583]	myo-inositol ChEBI	-	assimilation
[Ref.: #27583]	myo-inositol ChEBI	-	fermentation
[Ref.: #27583]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #27583]	nitrate ChEBI	-	reduction
[Ref.: #119963]	nitrate ChEBI	-	reduction
[Ref.: #119963]	nitrite ChEBI	-	reduction
[Ref.: #27583]	potassium gluconate ChEBI	-	assimilation
[Ref.: #27583]	raffinose ChEBI	-	assimilation
[Ref.: #27583]	raffinose ChEBI	-	fermentation
[Ref.: #27583]	ribitol ChEBI	-	assimilation
[Ref.: #27583]	salicin ChEBI	-	assimilation
[Ref.: #27583]	starch ChEBI	-	assimilation
[Ref.: #27583]	sucrose ChEBI	-	assimilation
[Ref.: #27583]	sucrose ChEBI	-	fermentation
[Ref.: #27583]	turanose ChEBI	-	assimilation
[Ref.: #31262]	tween 20 ChEBI	+	carbon source
[Ref.: #27583]	tween 20 ChEBI	+	assimilation
[Ref.: #27583]	xylitol ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #27583]	chloramphenicol ChEBI	yes	30
[Ref.: #27583]	erythromycin ChEBI	yes	10
[Ref.: #27583]	kanamycin ChEBI				yes	10	µg
[Ref.: #27583]	penicillin g ChEBI	yes	2	Unit
[Ref.: #27583]	polymyxin b ChEBI	yes	300	Unit
[Ref.: #27583]	rifampicin ChEBI	yes	10
[Ref.: #27583]	streptomycin ChEBI	yes	10
[Ref.: #27583]	tetracycline ChEBI	yes	30

	Antibiotica	Group ID of combined antibiotics	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #27583]		27	ampicillin ChEBI	yes	10	µg
[Ref.: #27583]		27	carbenicillin ChEBI	yes	10	µg

	Metabolite production	Metabolite	Production
[Ref.: #27583]		hydrogen sulfide ChEBI	no
[Ref.: #27583]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #119963]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #31262]	alkaline phosphatase	+	3.1.3.1
[Ref.: #27583]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #27583]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31262]	catalase	+	1.11.1.6
[Ref.: #27583]	catalase	+	1.11.1.6
[Ref.: #119963]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #31262]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #31262]	gelatinase	+
[Ref.: #27583]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119963]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119963]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #27583]	oxidase	+
[Ref.: #119963]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119963]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119963]	11456	-	+	+	-	-	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	tetrahydrofolate metabolism	85.71	12 of 14
[Ref.: #66794]	lipid metabolism	80.65	25 of 31
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	glycine betaine biosynthesis	80	4 of 5
[Ref.: #66794]	lipoate biosynthesis	80	4 of 5
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	histidine metabolism	79.31	23 of 29
[Ref.: #66794]	tryptophan metabolism	78.95	30 of 38
[Ref.: #66794]	purine metabolism	78.72	74 of 94
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	leucine metabolism	76.92	10 of 13
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	lysine metabolism	73.81	31 of 42
[Ref.: #66794]	pyrimidine metabolism	73.33	33 of 45
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	Entner Doudoroff pathway	70	7 of 10
[Ref.: #66794]	propionate fermentation	70	7 of 10
[Ref.: #66794]	phenylalanine metabolism	69.23	9 of 13
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	flavin biosynthesis	66.67	10 of 15
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	alanine metabolism	65.52	19 of 29
[Ref.: #66794]	glutamate and glutamine metabolism	64.29	18 of 28
[Ref.: #66794]	citric acid cycle	64.29	9 of 14
[Ref.: #66794]	proline metabolism	63.64	7 of 11
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	isoleucine metabolism	62.5	5 of 8
[Ref.: #66794]	vitamin B1 metabolism	61.54	8 of 13
[Ref.: #66794]	non-pathway related	60.53	23 of 38
[Ref.: #66794]	3-chlorocatechol degradation	60	3 of 5
[Ref.: #66794]	factor 420 biosynthesis	60	3 of 5
[Ref.: #66794]	arachidonate biosynthesis	60	3 of 5
[Ref.: #66794]	threonine metabolism	60	6 of 10
[Ref.: #66794]	glycolysis	58.82	10 of 17
[Ref.: #66794]	arginine metabolism	58.33	14 of 24
[Ref.: #66794]	methionine metabolism	57.69	15 of 26
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	polyamine pathway	56.52	13 of 23
[Ref.: #66794]	pentose phosphate pathway	54.55	6 of 11
[Ref.: #66794]	isoprenoid biosynthesis	53.85	14 of 26
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	heme metabolism	50	7 of 14
[Ref.: #66794]	glycogen biosynthesis	50	2 of 4
[Ref.: #66794]	cysteine metabolism	50	9 of 18
[Ref.: #66794]	tyrosine metabolism	50	7 of 14
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	4-hydroxyphenylacetate degradation	50	5 of 10
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	urea cycle	46.15	6 of 13
[Ref.: #66794]	phenylpropanoid biosynthesis	46.15	6 of 13
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	valine metabolism	44.44	4 of 9
[Ref.: #66794]	degradation of hexoses	44.44	8 of 18
[Ref.: #66794]	mevalonate metabolism	42.86	3 of 7
[Ref.: #66794]	reductive acetyl coenzyme A pathway	42.86	3 of 7
[Ref.: #66794]	oxidative phosphorylation	41.76	38 of 91
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	gallate degradation	40	2 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	degradation of sugar alcohols	37.5	6 of 16
[Ref.: #66794]	androgen and estrogen metabolism	37.5	6 of 16
[Ref.: #66794]	degradation of pentoses	35.71	10 of 28
[Ref.: #66794]	molybdenum cofactor biosynthesis	33.33	3 of 9
[Ref.: #66794]	arachidonic acid metabolism	33.33	6 of 18
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	degradation of sugar acids	32	8 of 25
[Ref.: #66794]	carotenoid biosynthesis	31.82	7 of 22
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	30.77	4 of 13
[Ref.: #66794]	phenol degradation	30	6 of 20
[Ref.: #66794]	myo-inositol biosynthesis	30	3 of 10
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	glutathione metabolism	28.57	4 of 14
[Ref.: #66794]	aclacinomycin biosynthesis	28.57	2 of 7
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	d-xylose degradation	27.27	3 of 11
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	metabolism of disaccharids	27.27	3 of 11
[Ref.: #66794]	3-phenylpropionate degradation	26.67	4 of 15
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	ascorbate metabolism	22.73	5 of 22
[Ref.: #66794]	nitrate assimilation	22.22	2 of 9
[Ref.: #66794]	chlorophyll metabolism	22.22	4 of 18
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6838]	Sample type/isolated from	sea water (sand filtered)
[Ref.: #6838]	Geographic location (country and/or sea, region)	Hong Kong, S. A. R., Port Shelter
[Ref.: #6838]	Country	China
[Ref.: #6838]	Country ISO 3 Code	CHN
[Ref.: #6838]	Continent	Asia

[Ref.: #27583]	Sample type/isolated from	sea water sample from Port Shelter
[Ref.: #27583]	Geographic location (country and/or sea, region)	Hong Kong
[Ref.: #27583]	Country	China
[Ref.: #27583]	Country ISO 3 Code	CHN
[Ref.: #27583]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Seawater collected in Port Shelter
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hong Kong SAR
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #119963]	Sample type/isolated from	Environment, Sea water
[Ref.: #119963]	Geographic location (country and/or sea, region)	Hong Kong
[Ref.: #119963]	Country	China
[Ref.: #119963]	Country ISO 3 Code	CHN
[Ref.: #119963]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB125062 (>99% sequence identity) for Owenweeksia hongkongensis subclade from Microbeatlas

Aquatic Samples	5081
Soil Samples	510
Animal Samples	9379
Plant Samples	92
Total Samples	15062

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6838]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119963]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #27583]	Owenweeksia hongkongensis gene for 16S rRNA, partial sequence	AB125062		GenBank ENA

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Owenweeksia hongkongensis DSM 17368 strain TrE-25oct19-222	926562.27	wgs	PATRIC	926562 tax ID	*
[Ref.: #66792]	Owenweeksia hongkongensis DSM 17368	926562.3	complete	PATRIC	926562 tax ID	*
[Ref.: #66792]	Owenweeksia hongkongensis DSM 17368	2508501098	complete	JGI IMG/M	926562 tax ID	*
[Ref.: #66792]	Owenweeksia hongkongensis DSM 17368 TrE-25oct19-222	GCA_945865885	contig	GenBank ENA	926562 tax ID	*
[Ref.: #66792]	Owenweeksia hongkongensis DSM 17368 ME-21oct19-33	GCA_945881955	contig	GenBank ENA	926562 tax ID	*
[Ref.: #66792]	Owenweeksia hongkongensis DSM 17368 ZH-03apr19-245	GCA_945907425	contig	GenBank ENA	926562 tax ID	*

[Ref.: #6838]	GC-content	39.6 mol%
[Ref.: #6838]	GC-content	40.2 mol%	sequence analysis
[Ref.: #67770]	GC-content	39.1-40.1 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Owenweeksia hongkongensis DSM 17368 DSM 17368 NCBI: GCA_000236705.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	96.933	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	92.63	yes
[Ref.: #125438]	aerobic	aerobicⓘ	yes	85.965	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	92.5	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	98.462	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	86.5	yes

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Owenweeksia hongkongensis DSM 17368 PATRIC: 926562.3
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	94.8
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	56.3
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	98.7
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	96.4

Availability in culture collections External links

[Ref.: #6838]

Culture collection no.

DSM 17368, JCM 12287, NRRL B-23963, UST 20020801, CIP 108786

[Ref.: #72763]

SI-ID 138997

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Lujinxingia vulgaris sp. nov., isolated from coastal sediment via prey-traps.	Wang S, Mu DS, Li GY, Du ZJ	Antonie Van Leeuwenhoek	10.1007/s10482-021-01640-5	2021	*
Phylogeny	Croceimicrobium hydrocarbonivorans gen. nov., sp. nov., a novel marine bacterium isolated from a bacterial consortium that degrades polyethylene terephthalate.	Liu R, Lai Q, Gu L, Yan P, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.004770	2021	*
Phylogeny	Vicingus serpentipes gen. nov., sp. nov., a new member of the Flavobacteriales from the North Sea.	Wiese J, Saha M, Wenzel-Storjohann A, Weinberger F, Schmaljohann R, Imhoff JF	Int J Syst Evol Microbiol	10.1099/ijsem.0.002509	2017	*
Phylogeny	Salibacter halophilus gen. nov., sp. nov., isolated from a saltern.	Lu DC, Xia J, Dunlap CA, Rooney AP, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001807	2017	*
Phylogeny	Luteibaculum oceani gen. nov., sp. nov., a carotenoid-producing, lipolytic bacterium isolated from surface seawater, and emended description of the genus Owenweeksia Lau et al. 2005.	Shahina M, Hameed A, Lin SY, Lai WA, Liu YC, Hsu YH, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.054635-0	2013	*
Genetics	Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801(T)).	Riedel T, Held B, Nolan M, Lucas S, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Palaniappan K, Rohde M, Tindall BJ, Detter JC, Goker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC	Stand Genomic Sci	10.4056/sigs.3296896	2012	*
Phylogeny	Phaeocystidibacter luteus gen. nov., sp. nov., a member of the family Cryomorphaceae isolated from the marine alga Phaeocystis globosa, and emended description of Owenweeksia hongkongensis.	Zhou Y, Su J, Lai Q, Li X, Yang X, Dong P, Zheng T	Int J Syst Evol Microbiol	10.1099/ijs.0.030254-0	2012	*
Phylogeny	Owenweeksia hongkongensis gen. nov., sp. nov., a novel marine bacterium of the phylum 'Bacteroidetes'.	Lau KWK, Ng CYM, Ren J, Lau SCL, Qian PY, Wong PK, Lau TC, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.63155-0	2005	*

References

#6838

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17368

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#27583

IJSEM 1051 2005 ( DOI 10.1099/ijs.0.63155-0 , PubMed 15879232 )

#31262

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27583 (see below)

#34970 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#72763

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID138997.1 )

#119963 Collection of Institut Pasteur ; Curators of the CIP; CIP 108786

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

#27583

IJSEM 1051 2005 ( DOI 10.1099/ijs.0.63155-0 , PubMed 15879232 )

* These data were automatically processed and therefore are not curated

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Owenweeksia hongkongensis DSM 17368 DSM 17368

Owenweeksia hongkongensis DSM 17368

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