Name: Corynebacterium ciconiae BIST 13
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3216

Type strain:

Species: Corynebacterium ciconiae

Strain Designation: BIST 13, BS 13, BS13

Culture col. no.: DSM 44920, CCUG 47525, CECT 5779, CIP 108588, JCM 13388

Strain history: CIP <- 2004, CCUG <- 2003, M.D. Collins, Reading Univ., Reading, UK: strain BS13

NCBI tax ID(s): 1121356 (strain), 227319 (species)

SI-ID 129361

CCUG 47525, CECT 5779, CIP 108588, DSM 44920, JCM 13388

Section

Corynebacterium ciconiae BIST 13 is a facultative anaerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from stork trachea .

colony-forming
Gram-positive
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Corynebacteriaceae*
	Genus	*Corynebacterium*
	Species	**Corynebacterium ciconiae**
	Full Scientific Name (LPSN)	Corynebacterium ciconiae Fernández-Garayzábal et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #23201]	Gram stain	positive
[Ref.: #118279]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #23201]	Cell shape	rod-shaped
[Ref.: #118279]	Cell shape	rod-shaped

[Ref.: #23201]	Motility	no
[Ref.: #118279]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %97.527

[Ref.: #23201]	Type of hemolysis	gamma
[Ref.: #23201]	Colony size	1-2 mm
[Ref.: #23201]	Colony color	creamy-white
[Ref.: #23201]	Colony shape	circular
[Ref.: #23201]	Incubation period	1 day
[Ref.: #23201]	Cultivation medium used	Columbia blood

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12193]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #12193]

Culture medium growth

[Ref.: #12193]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12193]

Culture medium composition

expand / minimize

[Ref.: #12193]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #12193]

Culture medium growth

[Ref.: #12193]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12193]

Culture medium composition

expand / minimize

[Ref.: #23201]

Culture medium

Columbia blood

[Ref.: #23201]

Culture medium growth

[Ref.: #38085]

Culture medium

MEDIUM 6 - Columbia agar with 10 % horse blood

[Ref.: #38085]

Culture medium growth

[Ref.: #38085]

Culture medium composition

expand / minimize

[Ref.: #118279]

Culture medium

CIP Medium 6

[Ref.: #118279]

Culture medium growth

[Ref.: #118279]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #12193]		growth	37 °C
[Ref.: #23201]		growth	37 °C
[Ref.: #38085]		growth	37 °C
[Ref.: #57735]		growth	37 °C
[Ref.: #67770]		growth	37 °C
[Ref.: #118279]		growth	25-41 °C
[Ref.: #118279]	no	growth	10 °C
[Ref.: #118279]	no	growth	15 °C
[Ref.: #118279]	no	growth	45 °C

[Ref.: #12193]	Temperature range	mesophilic
[Ref.: #23201]	Temperature range	mesophilic
[Ref.: #38085]	Temperature range	mesophilic
[Ref.: #57735]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #118279]	Temperature range	psychrophilic
[Ref.: #118279]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23201]	Oxygen tolerance	facultative anaerobe
[Ref.: #57735]	Oxygen tolerance	aerobe
[Ref.: #118279]	Oxygen tolerance	obligate aerobe

[Ref.: #23201]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #118279]		NaCl		growth	0-10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23201]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #23201]	3-O-methyl alpha-D-glucopyranoside	-	builds acid from
[Ref.: #23201]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #23201]	amygdalin ChEBI	-	builds acid from
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	arbutin ChEBI	-	builds acid from
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	cellobiose ChEBI	-	builds acid from
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #118279]	citrate ChEBI	-	carbon source
[Ref.: #23201]	D-arabinose ChEBI	+/-	builds acid from
[Ref.: #23201]	D-arabitol ChEBI	-	builds acid from
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	D-fructose ChEBI	+	builds acid from
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	D-fucose ChEBI	-	builds acid from
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	D-lyxose ChEBI	-	builds acid from
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	D-mannose ChEBI	+	builds acid from
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	D-tagatose ChEBI	-	builds acid from
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	D-xylose ChEBI	-	builds acid from
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	erythritol ChEBI	-	builds acid from
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	esculin ChEBI	-	hydrolysis
[Ref.: #118279]	esculin ChEBI	-	hydrolysis
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	galactitol ChEBI	-	builds acid from
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	gelatin ChEBI	-	hydrolysis
[Ref.: #23201]	gentiobiose ChEBI	-	builds acid from
[Ref.: #23201]	gentiobiose ChEBI	+/-	builds acid from
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	glucose ChEBI	+	builds acid from
[Ref.: #23201]	glycerol ChEBI	+	builds acid from
[Ref.: #23201]	glycogen ChEBI	-	builds acid from
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #118279]	hippurate ChEBI	+	hydrolysis
[Ref.: #23201]	inulin ChEBI	-	builds acid from
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	L-arabinose ChEBI	-	builds acid from
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	L-arabitol ChEBI	-	builds acid from
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	L-fucose ChEBI	+/-	builds acid from
[Ref.: #23201]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	L-xylose ChEBI	-	builds acid from
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	lactose ChEBI	-	builds acid from
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	maltose ChEBI	+	builds acid from
[Ref.: #23201]	mannitol ChEBI	-	builds acid from
[Ref.: #23201]	melezitose ChEBI	-	builds acid from
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	melibiose ChEBI	-	builds acid from
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	myo-inositol ChEBI	-	builds acid from
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	nitrate ChEBI	-	reduction
[Ref.: #118279]	nitrate ChEBI	-	reduction
[Ref.: #118279]	nitrate ChEBI	-	respiration
[Ref.: #118279]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #118279]	pyrazinamide ChEBI	+	hydrolysis
[Ref.: #23201]	raffinose ChEBI	-	builds acid from
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	ribitol ChEBI	-	builds acid from
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	ribose ChEBI	+	builds acid from
[Ref.: #23201]	salicin ChEBI	-	builds acid from
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	sorbitol ChEBI	-	builds acid from
[Ref.: #23201]	sorbose ChEBI	-	builds acid from
[Ref.: #23201]	starch ChEBI	+/-	builds acid from
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	sucrose ChEBI	-	builds acid from
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	trehalose ChEBI	+/-	builds acid from
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	turanose ChEBI	-	builds acid from
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23201]	urea ChEBI	-	hydrolysis
[Ref.: #23201]	xylitol ChEBI	-	builds acid from
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #118279]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #118279]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #118279]		acetoin ChEBI	-
[Ref.: #118279]		glucose ChEBI		+

	Enzyme	Enzyme activity	EC number
[Ref.: #23201]	6-phospho-beta-galactosidase	-	3.2.1.85
[Ref.: #23201]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #118279]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #23201]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #23201]	alpha-fucosidase	-	3.2.1.51
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #23201]	alpha-galactosidase	-	3.2.1.22
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #23201]	alpha-glucosidase	-	3.2.1.20
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #23201]	alpha-mannosidase	-	3.2.1.24
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #118279]	amylase	+
[Ref.: #118279]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #23201]	beta-glucosidase	+	3.2.1.21
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #23201]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #118279]	caseinase	-	3.4.21.50
[Ref.: #118279]	catalase	+	1.11.1.6
[Ref.: #23201]	chymotrypsin	-	3.4.4.5
[Ref.: #23201]	cystine arylamidase	-	3.4.11.3
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #118279]	DNase	-
[Ref.: #23201]	esterase (C 4)	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #23201]	esterase lipase (C 8)	+
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #118279]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #118279]	gelatinase	-
[Ref.: #118279]	lecithinase	-
[Ref.: #23201]	leucine arylamidase	+	3.4.11.1
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #118279]	lipase	-
[Ref.: #23201]	lipase (C 14)	+
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #118279]	lysine decarboxylase	-	4.1.1.18
[Ref.: #23201]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #23201]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #118279]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #118279]	oxidase	-
[Ref.: #118279]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #118279]	protease	+
[Ref.: #23201]	pyrazinamidase	+	3.5.1.B15
[Ref.: #23201]	pyrrolidonyl arylamidase	-	3.4.19.3
[Ref.: #23201]	trypsin	-	3.4.21.4
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #118279]	tryptophan deaminase	-
[Ref.: #118279]	tween esterase	+
[Ref.: #118279]	urease	-	3.5.1.5
[Ref.: #23201]	valine arylamidase	-
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #118279]	11332	not determinedn.d.	+/-	-	+/-	-	+/-	-	-	-	-	-	+/-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	+/-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #118279]	2816	not determinedn.d.	+	+	-	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-	+	-	-	-	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #118279]	11309	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12193]	Sample type/isolated from	stork trachea (black healthy stork)
[Ref.: #12193]	Geographic location (country and/or sea, region)	Madrid
[Ref.: #12193]	Country	Spain
[Ref.: #12193]	Country ISO 3 Code	ESP
[Ref.: #12193]	Continent	Europe

[Ref.: #57735]	Sample type/isolated from	Stork trachea,black healthy stork (Ciconia nigra)
[Ref.: #57735]	Geographic location (country and/or sea, region)	Madrid ?
[Ref.: #57735]	Country	Spain
[Ref.: #57735]	Country ISO 3 Code	ESP
[Ref.: #57735]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Trachea of a black stork (Ciconia nigra)
[Ref.: #67770]	Host species	Ciconia nigra

[Ref.: #118279]	Sample type/isolated from	Black healthy stork, trachea
[Ref.: #118279]	Geographic location (country and/or sea, region)	Madrid
[Ref.: #118279]	Country	Spain
[Ref.: #118279]	Country ISO 3 Code	ESP
[Ref.: #118279]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Birds	-
#Host Body-Site	#Oral cavity and airways	#Trachea

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ555193 (>99% sequence identity) for Corynebacterium ciconiae subclade from Microbeatlas

Aquatic Samples	2
Soil Samples	4
Animal Samples	105
Plant Samples
Total Samples	111

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12193]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #118279]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12193]	Corynebacterium ciconiae partial 16S rRNA gene, type strain CCUG 47525T	AJ555193	1405	ENA	227319 tax ID
[Ref.: #20218]	Corynebacterium ciconiae strain CCUG 47525 16S ribosomal RNA gene, partial sequence	AY965874	412	ENA	227319 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Corynebacterium ciconiae DSM 44920	GCA_000372385	contig	GenBank	1121356 tax ID
[Ref.: #66792]	Corynebacterium ciconiae DSM 44920	1121356.3	wgs	PATRIC	1121356 tax ID	*
[Ref.: #66792]	Corynebacterium ciconiae DSM 44920	2515154014	draft	JGI IMG/M	1121356 tax ID	*

[Ref.: #67770]

GC-content

62.1 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Corynebacterium ciconiae DSM 44920 PATRIC: 1121356.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Corynebacterium ciconiae DSM 44920 PATRIC: 1121356.3
[Ref.: #69480]	motile	no	93.658	no
[Ref.: #69480]	flagellated	no	96.994	no
[Ref.: #69480]	gram-positive	yes	93.515	yes
[Ref.: #69480]	anaerobic	no	98.857	no
[Ref.: #69480]	aerobic	no	73.049	no
[Ref.: #69480]	halophile	yes	77.076	no
[Ref.: #69480]	spore-forming	no	92.696	yes
[Ref.: #69480]	glucose-util	yes	90.034	no
[Ref.: #69480]	thermophile	no	92.884	no
[Ref.: #69480]	glucose-ferment	yes	67.628	no

Availability in culture collections External links

[Ref.: #12193]

Culture collection no.

DSM 44920, CCUG 47525, CECT 5779, CIP 108588, JCM 13388

[Ref.: #72731]

SI-ID 129361

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Corynebacterium ciconiae sp. nov., isolated from the trachea of black storks (Ciconia nigra).	Fernandez-Garayzabal JF, Vela AI, Egido R, Hutson RA, Lanzarot MP, Fernandez-Garcia M, Collins MD	Int J Syst Evol Microbiol	10.1099/ijs.0.63165-0	2004	*

References

#12193

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44920

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23201

J. F. Fernández-Garayzábal, A. I. Vela, R. Egido, R. A. Hutson, M. P. Lanzarot, M. Fernández-García, M. D. Collins: Corynebacterium ciconiae sp. nov., isolated from the trachea of black storks (Ciconia nigra). IJSEM 54: 2191 - 2195 2004 ( DOI 10.1099/ijs.0.63165-0 , PubMed 15545457 )

#38085 ; Curators of the CIP;
#57735 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47525

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72731

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID129361.1 )

#118279 Collection of Institut Pasteur ; Curators of the CIP; CIP 108588
* These data were automatically processed and therefore are not curated

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Corynebacterium ciconiae DSM 44920

Corynebacterium ciconiae DSM 44920

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