Corynebacterium halotolerans | Type strain | CCUG 54529, DSM 44683, CCTCC AA 001024, CIP 108972, JCM 12676, YIM 70093

Strain identifier

BacDive ID: 3209

Type strain:

Species: Corynebacterium halotolerans

Culture col. no.: CCUG 54529, DSM 44683, CCTCC AA 001024, CIP 108972, JCM 12676, YIM 70093

Strain history: <- W.-J. Li <- CCTCC <- YIM

Section

Name and taxonomic classification
Morphology
Culture and growth conditions
Physiology and metabolism
Isolation, sampling and environmental information
Safety information
Sequence information

External links

Corynebacterium halotolerans CCUG 54529 is an aerobe, halotolerant, mesophilic bacterium that was isolated from saline soil.

gram-positive
rod-shaped
aerobe
halotolerant
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Actinobacteria
	Class	Actinobacteria
	Order	Mycobacteriales
	Family	Corynebacteriaceae
	Genus	Corynebacterium
	Species	Corynebacterium halotolerans
	Full Scientific Name (PNU)	Corynebacterium halotolerans Chen et al. 2004

Information on morphological and physiological propertiesMorphology

[Ref.: #23194]	Gram stain	positive
[Ref.: #23194]	Cell shape	rod-shaped
[Ref.: #23194]	Motility	no

[Ref.: #30093]	Gram stain	positive
[Ref.: #30093]	Cell shape	rod-shaped
[Ref.: #30093]	Motility	no

[Ref.: #23194]	Colony size	0.5-1.5 mm
[Ref.: #23194]	Colony color	yellow
[Ref.: #23194]	Colony shape	circular
[Ref.: #23194]	Incubation period	1 day
[Ref.: #23194]	Cultivation medium used	ISP 5 medium, trypticase/soy agar and Mueller-Hinton agar

[Ref.: #20094]	Colony color	Zinc yellow (1018)
[Ref.: #20094]	Incubation period	10-14 days
[Ref.: #20094]	Cultivation medium used	ISP 2

[Ref.: #20094]	Colony color	Zinc yellow (1018)
[Ref.: #20094]	Incubation period	10-14 days
[Ref.: #20094]	Cultivation medium used	ISP 6

[Ref.: #20094]	Incubation period	10-14 days
[Ref.: #20094]	Cultivation medium used	ISP 3

[Ref.: #20094]	Incubation period	10-14 days
[Ref.: #20094]	Cultivation medium used	ISP 4

[Ref.: #20094]	Incubation period	10-14 days
[Ref.: #20094]	Cultivation medium used	ISP 5

[Ref.: #20094]	Incubation period	10-14 days
[Ref.: #20094]	Cultivation medium used	ISP 7

[Ref.: #60217]	Incubation period	2 days

[Ref.: #20094]	Multicellular complex forming ability	no
[Ref.: #20094]	Medium Name (multicellularity)	ISP 2

[Ref.: #20094]	Multicellular complex forming ability	no
[Ref.: #20094]	Medium Name (multicellularity)	ISP 3

[Ref.: #20094]	Multicellular complex forming ability	no
[Ref.: #20094]	Medium Name (multicellularity)	ISP 4

[Ref.: #20094]	Multicellular complex forming ability	no
[Ref.: #20094]	Medium Name (multicellularity)	ISP 5

[Ref.: #20094]	Multicellular complex forming ability	no
[Ref.: #20094]	Medium Name (multicellularity)	ISP 6

[Ref.: #20094]	Multicellular complex forming ability	no
[Ref.: #20094]	Medium Name (multicellularity)	ISP 7

[Ref.: #30093]

Pigment production

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #11998]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #11998]

Culture medium growth

[Ref.: #11998]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #11998]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #11998]

Culture medium growth

[Ref.: #11998]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #20094]

Culture medium

ISP 2

[Ref.: #20094]

Culture medium growth

[Ref.: #20094]

Culture medium composition

expand / minimize

[Ref.: #20094]

Culture medium

ISP 3

[Ref.: #20094]

Culture medium growth

[Ref.: #20094]

Culture medium composition

expand / minimize

[Ref.: #20094]

Culture medium

ISP 4

[Ref.: #20094]

Culture medium growth

[Ref.: #20094]

Culture medium composition

expand / minimize

[Ref.: #20094]

Culture medium

ISP 5

[Ref.: #20094]

Culture medium growth

[Ref.: #20094]

Culture medium composition

expand / minimize

[Ref.: #20094]

Culture medium

ISP 6

[Ref.: #20094]

Culture medium growth

[Ref.: #20094]

Culture medium composition

expand / minimize

[Ref.: #20094]

Culture medium

ISP 7

[Ref.: #20094]

Culture medium growth

[Ref.: #20094]

Culture medium composition

expand / minimize

[Ref.: #23194]

Culture medium

ISP 5 medium, trypticase/soy agar and
Mueller-Hinton agar

[Ref.: #23194]

Culture medium growth

[Ref.: #37454]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #37454]

Culture medium growth

[Ref.: #37454]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #11998]	growth	37 ̊C
[Ref.: #20094]	optimum	37 ̊C
[Ref.: #23194]	optimum	28 ̊C
[Ref.: #30093]	optimum	28 ̊C
[Ref.: #37454]	growth	37 ̊C
[Ref.: #60217]	growth	37 ̊C

[Ref.: #11998]	Temperature range	mesophilic
[Ref.: #20094]	Temperature range	mesophilic
[Ref.: #23194]	Temperature range	mesophilic
[Ref.: #30093]	Temperature range	mesophilic
[Ref.: #37454]	Temperature range	mesophilic
[Ref.: #60217]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30093]			optimum	7.2

Information on physiology and metabolismPhysiology and metabolism

[Ref.: #23194]	Oxygen tolerance	aerobe
[Ref.: #30093]	Oxygen tolerance	aerobe
[Ref.: #60217]	Oxygen tolerance	aerobe

[Ref.: #23194]	Ability of spore formation	no
[Ref.: #30093]	Ability of spore formation	no

[Ref.: #23194]

Halophily / tolerance level

halotolerant

	Salt		Salt conc.
[Ref.: #23194]	KCl	optimum	10	%
[Ref.: #23194]	NaCl	optimum	10	%
[Ref.: #23194]	MgCl2	optimum	10	%
[Ref.: #30093]	NaCl	optimum	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23194]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #23194]	amygdalin ChEBI	-	carbon source
[Ref.: #20094]	arabinose ChEBI	-
[Ref.: #23194]	arabinose ChEBI	+	carbon source
[Ref.: #30093]	arabinose ChEBI	+	carbon source
[Ref.: #23194]	cellobiose ChEBI	-	carbon source
[Ref.: #20094]	cellulose ChEBI	-
[Ref.: #30093]	dextrin ChEBI	+	carbon source
[Ref.: #20094]	fructose ChEBI	+
[Ref.: #23194]	fructose ChEBI	-	carbon source
[Ref.: #23194]	galactose ChEBI	+	carbon source
[Ref.: #30093]	galactose ChEBI	+	carbon source
[Ref.: #30093]	gelatin ChEBI	+	carbon source
[Ref.: #20094]	glucose ChEBI	+
[Ref.: #23194]	glucose ChEBI	+	builds acid from
[Ref.: #23194]	glucose ChEBI	+	carbon source
[Ref.: #30093]	glucose ChEBI	+	carbon source
[Ref.: #23194]	lactose ChEBI	-	carbon source
[Ref.: #23194]	maltose ChEBI	+	carbon source
[Ref.: #30093]	maltose ChEBI	+	carbon source
[Ref.: #20094]	mannitol ChEBI	+
[Ref.: #23194]	mannitol ChEBI	+	carbon source
[Ref.: #30093]	mannitol ChEBI	+	carbon source
[Ref.: #23194]	mannose ChEBI	+	carbon source
[Ref.: #30093]	mannose ChEBI	+	carbon source
[Ref.: #20094]	myo-inositol ChEBI	-
[Ref.: #23194]	nitrate ChEBI	-	reduction
[Ref.: #23194]	nitrate ChEBI	+	reduction
[Ref.: #30093]	nitrate ChEBI	+	reduction
[Ref.: #20094]	raffinose ChEBI	-
[Ref.: #20094]	rhamnose ChEBI	-
[Ref.: #23194]	ribose ChEBI	+	carbon source
[Ref.: #30093]	ribose ChEBI	+	carbon source
[Ref.: #23194]	salicin ChEBI	+	carbon source
[Ref.: #30093]	salicin ChEBI	+	carbon source
[Ref.: #23194]	starch ChEBI	+	carbon source
[Ref.: #23194]	starch ChEBI	+	hydrolysis
[Ref.: #20094]	sucrose ChEBI	-
[Ref.: #23194]	sucrose ChEBI	+	carbon source
[Ref.: #30093]	sucrose ChEBI	+	carbon source
[Ref.: #30093]	urea ChEBI	+	carbon source
[Ref.: #20094]	xylose ChEBI	-
[Ref.: #23194]	xylose ChEBI	+	carbon source
[Ref.: #30093]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #23194]	alpha-galactosidase	-	3.2.1.22
[Ref.: #23194]	arginine dihydrolase	-	3.5.3.6
[Ref.: #23194]	beta-galactosidase	-	3.2.1.23
[Ref.: #23194]	beta-glucosidase	-	3.2.1.21
[Ref.: #23194]	beta-glucuronidase	+	3.2.1.31
[Ref.: #30093]	catalase	+	1.11.1.6
[Ref.: #30093]	gelatinase	+
[Ref.: #23194]	lipase (C 14)	+
[Ref.: #23194]	lysine decarboxylase	-	4.1.1.18
[Ref.: #23194]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #23194]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #30093]	urease	+	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #20094]	435	not determinedn.d.	+	-	+	-	-	-	-	-	+/-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	+	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #20094]	875	not determinedn.d.	+	+	+	-	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #11998]	Sample type/isolated from	saline soil
[Ref.: #11998]	Geographic location (country and/or sea, region)	Aiding Lake in Xinnjiang province
[Ref.: #11998]	Country	China
[Ref.: #11998]	Country ISO 3 Code	CHN
[Ref.: #11998]	Continent	Asia

[Ref.: #60217]	Sample type/isolated from	Saline soil
[Ref.: #60217]	Country	China
[Ref.: #60217]	Country ISO 3 Code	CHN
[Ref.: #60217]	Continent	Asia

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsSafety information

[Ref.: #11998]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassSequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Corynebacterium halotolerans strain DSM 44683 16S ribosomal RNA gene, partial sequence	DQ002919	420	ENA	1121362 tax ID	*
[Ref.: #11998]	Corynebacterium halophilum 16S ribosomal RNA gene, partial sequence	AY226509	1492	ENA	1121362 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Corynebacterium halotolerans YIM 70093 = DSM 44683	GCA_000341345	complete	GenBank	1121362 tax ID
[Ref.: #66792]	Corynebacterium halotolerans YIM 70093 = DSM 44683	GCA_000688435	contig	GenBank	1121362 tax ID
[Ref.: #66792]	Corynebacterium halotolerans 307_CHAL	GCA_001056295	scaffold	GenBank	225326 tax ID
[Ref.: #66792]	Corynebacterium halotolerans YIM 70093 = DSM 44683	1121362.6	wgs	PATRIC	1121362 tax ID
[Ref.: #66792]	Corynebacterium halotolerans YIM 70093 = DSM 44683	1121362.10	plasmid	PATRIC	1121362 tax ID
[Ref.: #66792]	Corynebacterium halotolerans YIM 70093 = DSM 44683	1121362.3	complete	PATRIC	1121362 tax ID
[Ref.: #66792]	Corynebacterium halotolerans strain 307_CHAL	225326.4	wgs	PATRIC	225326 tax ID
[Ref.: #66792]	Corynebacterium halotolerans YIM 70093, DSM 44683	2556921045	permanent	JGI IMG/M	1121362 tax ID

[Ref.: #11998]	GC-content	63 mol%
[Ref.: #23194]	GC-content	63.0 mol%	Thermal denaturation, fluorometry

Availability in culture collectionsExternal links

[Ref.: #11998]

Culture collection no.

CCUG 54529, DSM 44683, CCTCC AA 001024, CIP 108972, JCM 12676, YIM 70093

[Ref.: #20218]

Associated Passport(s) in StrainInfo

378365, 378364, 690709, 534423, 378366

References

#11998

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44683

#20094

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23194

Hua-Hong Chen, Wen-Jun Li, Shu-Kun Tang, Reiner M. Kroppenstedt, Erko Stackebrandt, Li-Hua Xu, Cheng-Lin Jiang: Corynebacterium halotolerans sp. nov., isolated from saline soil in the west of China. IJSEM 54: 779 - 782 2004 ( DOI 10.1099/ijs.0.02919-0 )

#30093

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 ) - originally annotated from #26450 (see below)

#37454 ; Curators of the CIP;
#60217 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54529

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#26450

IJSEM 779 2004 ( DOI 10.1099/ijs.0.02929-0 )

* These References are textmined

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