Corynebacterium halotolerans (CCUG 54529, DSM 44683, CCTCC AA 001024)

Name: Corynebacterium halotolerans (CCUG 54529, DSM 44683, CCTCC AA 001024)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3209

Type strain

Culture col. no. CCUG 54529 DSM 44683 CCTCC AA 001024 CIP 108972 JCM 12676 2 more

NCBI tax ID(s) 1121362 225326

Special Collections DSMZ CCUG JCM KCTC CIP Wink compendium Literature strains

History <- W.-J. Li <- CCTCC <- YIM DSM 44683 <-- W.-J. Li YIM 70093. CIP <- 2005, DSMZ <- W. J. Li <- CCTCC <- YIM: strain YIM 70093

Links

Corynebacterium halotolerans CCUG 54529 is an aerobe, halotolerant, Gram-positive bacterium that was isolated from saline soil.

Gram-positive rod-shaped aerobe halotolerant genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 132014

DSM 44683,JCM 12676,KCTC 19015,CIP 108972,CCUG 54529

@ref 20215

Last LPSN update 2026-02-09 11:18:27

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium halotolerans

Full scientific name Corynebacterium halotolerans Chen et al. 2004

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
23194	positive	rod-shaped
30093	positive	rod-shaped
119824	positive	oval-shaped
125438			92.5
125438	positive		90.115
125439	positive		98.8

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
20094		Zinc yellow (1018)		10-14 days	ISP 2
20094				10-14 days	ISP 3
20094				10-14 days	ISP 4
20094				10-14 days	ISP 5
20094		Zinc yellow (1018)		10-14 days	ISP 6
20094				10-14 days	ISP 7
23194	0.5-1.5 mm	yellow	circular	1 day	ISP 5 medium, trypticase/soy agar and Mueller-Hinton agar
60217				2 days
119824

Multicellular morphology

@ref	Forms multicellular complex	Medium name
20094		ISP 2
20094		ISP 3
20094		ISP 4
20094		ISP 5
20094		ISP 6
20094		ISP 7

Pigmentation

30093

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
11998	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
11998	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
20094	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
20094	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
20094	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
20094	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
20094	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
20094	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
23194	ISP 5 medium, trypticase/soy agar and Mueller-Hinton agar
37454	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
119824	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
11998	positive	growth	37
20094	positive	optimum	37
23194	positive	optimum	28
30093	positive	optimum	28
37454	positive	growth	37
60217	positive	growth	37
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH
30093	positive	optimum	7.2

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
23194	aerobe
30093	aerobe
60217	aerobe
119824	obligate aerobe

Spore formation

@ref	Spore formation
23194
30093

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
23194	halotolerant	KCl	positive	optimum	10 %
23194		NaCl	positive	optimum	10 %
23194		MgCl2	positive	optimum	10 %
30093		NaCl	positive	optimum	10 %

Observation

67770

Observationquinones: MK-9(H₂), MK-8(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23194	40585 ChEBI	alpha-cyclodextrin	+	carbon source
23194	27613 ChEBI	amygdalin	-	carbon source
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
20094	22599 ChEBI	arabinose	-
23194	22599 ChEBI	arabinose	+	carbon source
30093	22599 ChEBI	arabinose	+	carbon source
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
23194	17057 ChEBI	cellobiose	-	carbon source
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
20094	62968 ChEBI	cellulose	-
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
30093	23652 ChEBI	dextrin	+	carbon source
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
20094	28757 ChEBI	fructose	+
23194	28757 ChEBI	fructose	-	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
23194	28260 ChEBI	galactose	+	carbon source
30093	28260 ChEBI	galactose	+	carbon source
30093	5291 ChEBI	gelatin	+	carbon source
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
20094	17234 ChEBI	glucose	+
23194	17234 ChEBI	glucose	+	builds acid from
23194	17234 ChEBI	glucose	+	carbon source
30093	17234 ChEBI	glucose	+	carbon source
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
23194	17716 ChEBI	lactose	-	carbon source
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
23194	17306 ChEBI	maltose	+	carbon source
30093	17306 ChEBI	maltose	+	carbon source
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
20094	29864 ChEBI	mannitol	+
23194	29864 ChEBI	mannitol	+	carbon source
30093	29864 ChEBI	mannitol	+	carbon source
23194	37684 ChEBI	mannose	+	carbon source
30093	37684 ChEBI	mannose	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
20094	17268 ChEBI	myo-inositol	-
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
23194	17632 ChEBI	nitrate	-	reduction
23194	17632 ChEBI	nitrate	+	reduction
30093	17632 ChEBI	nitrate	+	reduction
119824	17632 ChEBI	nitrate	+	reduction
119824	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
20094	16634 ChEBI	raffinose	-
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
20094	26546 ChEBI	rhamnose	-
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
23194	33942 ChEBI	ribose	+	carbon source
30093	33942 ChEBI	ribose	+	carbon source
23194	17814 ChEBI	salicin	+	carbon source
30093	17814 ChEBI	salicin	+	carbon source
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
23194	28017 ChEBI	starch	+	carbon source
23194	28017 ChEBI	starch	+	hydrolysis
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
20094	17992 ChEBI	sucrose	-
23194	17992 ChEBI	sucrose	+	carbon source
30093	17992 ChEBI	sucrose	+	carbon source
68379	17992 ChEBI	sucrose	+	fermentation	from API Coryne
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
30093	16199 ChEBI	urea	+	carbon source
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid
20094	18222 ChEBI	xylose	-
23194	18222 ChEBI	xylose	+	carbon source
30093	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
119824	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
119824	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
23194	alpha-galactosidase	-	3.2.1.22
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
23194	arginine dihydrolase	-	3.5.3.6
23194	beta-galactosidase	-	3.2.1.23
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
23194	beta-glucosidase	-	3.2.1.21
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
23194	beta-glucuronidase	+	3.2.1.31
68382	beta-glucuronidase	+	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
30093	catalase	+	1.11.1.6
119824	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
30093	gelatinase	+
68379	gelatinase	-		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
23194	lipase (C 14)	+
68382	lipase (C 14)	-		from API zym
23194	lysine decarboxylase	-	4.1.1.18
119824	lysine decarboxylase	-	4.1.1.18
23194	N-acetyl-beta-glucosaminidase	-	3.2.1.52
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
23194	ornithine decarboxylase	-	4.1.1.17
119824	ornithine decarboxylase	-	4.1.1.17
119824	oxidase	+
68379	pyrazinamidase	+	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
30093	urease	+	3.5.1.5
119824	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	resorcinol degradation	100	2 of 2
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	methylglyoxal degradation	100	5 of 5
66794	glycogen metabolism	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	threonine metabolism	100	10 of 10
66794	ethanol fermentation	100	2 of 2
66794	acetate fermentation	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	aerobactin biosynthesis	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	adipate degradation	100	2 of 2
66794	denitrification	100	2 of 2
66794	phenylalanine metabolism	92.31	12 of 13
66794	4-hydroxyphenylacetate degradation	90	9 of 10
66794	starch degradation	90	9 of 10
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	citric acid cycle	85.71	12 of 14
66794	photosynthesis	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	leucine metabolism	84.62	11 of 13
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	metabolism of disaccharids	81.82	9 of 11
66794	vitamin K metabolism	80	4 of 5
66794	gallate degradation	80	4 of 5
66794	heme metabolism	78.57	11 of 14
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	palmitate biosynthesis	77.27	17 of 22
66794	vitamin B1 metabolism	76.92	10 of 13
66794	purine metabolism	76.6	72 of 94
66794	sulfopterin metabolism	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	butanoate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	phenol degradation	75	15 of 20
66794	pentose phosphate pathway	72.73	8 of 11
66794	proline metabolism	72.73	8 of 11
66794	alanine metabolism	72.41	21 of 29
66794	NAD metabolism	72.22	13 of 18
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	oxidative phosphorylation	71.43	65 of 91
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	propionate fermentation	70	7 of 10
66794	isoprenoid biosynthesis	69.23	18 of 26
66794	urea cycle	69.23	9 of 13
66794	pyrimidine metabolism	68.89	31 of 45
66794	tryptophan metabolism	68.42	26 of 38
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	3-phenylpropionate degradation	66.67	10 of 15
66794	flavin biosynthesis	66.67	10 of 15
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	4-hydroxymandelate degradation	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	nitrate assimilation	66.67	6 of 9
66794	glycolysis	64.71	11 of 17
66794	glutathione metabolism	64.29	9 of 14
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	lipid metabolism	61.29	19 of 31
66794	cysteine metabolism	61.11	11 of 18
66794	3-chlorocatechol degradation	60	3 of 5
66794	tetrahydrofolate metabolism	57.14	8 of 14
66794	d-mannose degradation	55.56	5 of 9
66794	non-pathway related	55.26	21 of 38
66794	lysine metabolism	54.76	23 of 42
66794	d-xylose degradation	54.55	6 of 11
66794	arginine metabolism	54.17	13 of 24
66794	sulfate reduction	53.85	7 of 13
66794	methionine metabolism	53.85	14 of 26
66794	histidine metabolism	51.72	15 of 29
66794	Entner Doudoroff pathway	50	5 of 10
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	cyclohexanol degradation	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	CMP-KDO biosynthesis	50	2 of 4
66794	vitamin E metabolism	50	2 of 4
66794	phenylmercury acetate degradation	50	1 of 2
66794	selenocysteine biosynthesis	50	3 of 6
66794	quinate degradation	50	1 of 2
66794	androgen and estrogen metabolism	50	8 of 16
66794	cholesterol biosynthesis	45.45	5 of 11
66794	vitamin B6 metabolism	45.45	5 of 11
66794	lipid A biosynthesis	44.44	4 of 9
66794	degradation of sugar alcohols	43.75	7 of 16
66794	tyrosine metabolism	42.86	6 of 14
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	carotenoid biosynthesis	40.91	9 of 22
66794	glycine betaine biosynthesis	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	O-antigen biosynthesis	40	2 of 5
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
66794	degradation of sugar acids	36	9 of 25
66794	degradation of pentoses	35.71	10 of 28
66794	enterobactin biosynthesis	33.33	1 of 3
66794	chlorophyll metabolism	33.33	6 of 18
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	pantothenate biosynthesis	33.33	2 of 6
66794	ascorbate metabolism	31.82	7 of 22
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	degradation of hexoses	27.78	5 of 18
66794	lactate fermentation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	biotin biosynthesis	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	vitamin B12 metabolism	23.53	8 of 34
66794	daunorubicin biosynthesis	22.22	2 of 9
66794	polyamine pathway	21.74	5 of 23

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
20094	not determinedn.d.	+	-	+	-	-	-	-	-	+/-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	+	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
20094	not determinedn.d.	+	+	+	-	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-
119824	-	+	+	+	-	+	-	-	+	-	-	-	-	-	+	-	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
119824	not determinedn.d.	-	-	-	-	+/-	-	-	-	-	-	+/-	+/-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
11998	saline soil	Aiding Lake in Xinnjiang province	China	CHN	Asia
60217	Saline soil		China	CHN	Asia
67770	Saline soil	Xinjiang Province	China	CHN	Asia
119824	Environment, Saline soil		China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11998	1	Risk group (German classification) According to TRBA 466
119824	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM34134v1 assembly for Corynebacterium halotolerans YIM 70093 = DSM 44683	complete	GCA_000341345	1121362.3	2524023198	1121362	98.16
67770	ASM68843v1 assembly for Corynebacterium halotolerans YIM 70093 = DSM 44683	contig	GCA_000688435	1121362.6	2556921045	1121362	73.45

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Corynebacterium halotolerans strain DSM 44683 16S ribosomal RNA gene, partial sequence	DQ002919	420		1121362
11998	Corynebacterium halophilum 16S ribosomal RNA gene, partial sequence	AY226509	1492		1121362

GC content

@ref	GC-content (mol%)	Method
11998	63
23194	63.0	Thermal denaturation, fluorometry
67770	63	thermal denaturation, midpoint method (Tm)
67770	68.3	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Corynebacterium halotolerans YIM 70093 = DSM 44683
PATRIC: 1121362.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	71.20	no
125439	gram_stain	BacteriaNetⓘ	positive	98.80	no
125439	motility	BacteriaNetⓘ	no	81.70	no
125439	spore_formation	BacteriaNetⓘ	no	72.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium halotolerans YIM 70093 = DSM 44683 YIM 70093 = DSM 44683
NCBI: GCA_000341345.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.12	no
125438	anaerobic	anaerobicⓘ	no	95.59	yes
125438	aerobic	aerobicⓘ	yes	76.58	yes
125438	spore-forming	spore-formingⓘ	no	74.88	yes
125438	thermophilic	thermophileⓘ	no	93.88	no
125438	flagellated	motile2+ⓘ	no	92.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics.	Koehorst JJ, Saccenti E, Schaap PJ, Martins Dos Santos VAP, Suarez-Diez M.	F1000Res	10.12688/f1000research.9416.3	2016
	High-throughput sequencing reveals the structure and metabolic resilience of desert microbiome confronting climate change.	Mousa WK, Abu-Izneid T, Salah-Tantawy A.	Front Plant Sci	10.3389/fpls.2024.1294173	2024
	Kinetic and Structural Analysis of Two Linkers in the Tautomerase Superfamily: Analysis and Implications.	Baas BJ, Medellin BP, LeVieux JA, Erwin K, Lancaster EB, Johnson WH, Kaoud TS, Moreno RY, de Ruijter M, Babbitt PC, Zhang YJ, Whitman CP.	Biochemistry	10.1021/acs.biochem.1c00220	2021
	Heterologous expression and characterization of a novel halotolerant, thermostable, and alkali-stable GH6 endoglucanase from Thermobifida halotolerans	Yin YR, Zhang F, Hu QW, Xian WD, Hozzein WN, Zhou EM, Ming H, Nie GX, Li WJ.	Biotechnol Lett		2015
	Presence of periodontal pathogenic bacteria in blood of patients with coronary artery disease.	Corredor Z, Suarez-Molina A, Fong C, Cifuentes-C L, Guauque-Olarte S.	Sci Rep	10.1038/s41598-022-05337-1	2022
Phylogeny	Association of gut microbiota and SCFAs with finishing weight of Diannan small ear pigs.	Lan Q, Lian Y, Peng P, Yang L, Zhao H, Huang P, Ma H, Wei H, Yin Y, Liu M.	Front Microbiol	10.3389/fmicb.2023.1117965	2023
	Clinical characteristics, diagnosis, outcomes and lung microbiome analysis of invasive pulmonary aspergillosis in the community-acquired pneumonia patients.	Ao Z, Xu H, Li M, Liu H, Deng M, Liu Y.	BMJ Open Respir Res	10.1136/bmjresp-2022-001358	2023
	Genome sequence of the marine bacterium Corynebacterium maris type strain Coryn-1(T) (= DSM 45190(T)).	Schaffert L, Albersmeier A, Bednarz H, Niehaus K, Kalinowski J, Ruckert C.	Stand Genomic Sci	10.4056/sigs.4057796	2013
	RiboTaxa: combined approaches for rRNA genes taxonomic resolution down to the species level from metagenomics data revealing novelties.	Chakoory O, Comtet-Marre S, Peyret P.	NAR Genom Bioinform	10.1093/nargab/lqac070	2022
Genetics	Characterization of the public transit air microbiome and resistome reveals geographical specificity.	Leung MHY, Tong X, Boifot KO, Bezdan D, Butler DJ, Danko DC, Gohli J, Green DC, Hernandez MT, Kelly FJ, Levy S, Mason-Buck G, Nieto-Caballero M, Syndercombe-Court D, Udekwu K, Young BG, Mason CE, Dybwad M, Lee PKH.	Microbiome	10.1186/s40168-021-01044-7	2021
	A novel marine bacterium Isoptericola sp. JS-C42 with the ability to saccharifying the plant biomasses for the aid in cellulosic ethanol production.	Santhi VS, Gupta A, Saranya S, Jebakumar SRD.	Biotechnol Rep (Amst)	10.1016/j.btre.2014.05.002	2014
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Genetics	Genome sequence of the halotolerant bacterium Corynebacterium halotolerans type strain YIM 70093(T) (= DSM 44683(T)).	Ruckert C, Albersmeier A, Al-Dilaimi A, Niehaus K, Szczepanowski R, Kalinowski J	Stand Genomic Sci	10.4056/sigs.3236691	2012
	Corynebacterium hylobatis sp. nov. and Corynebacterium lemuris sp. nov., two novel species of the genus Corynebacterium isolated from faeces of primates.	Chen X, Chen XM, He JB, Yuan Q, Jiang MX, Wang JA, Jiang Y.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005985	2023
Phylogeny	Microbacterium halophytorum sp. nov., a novel endophytic actinobacterium isolated from halophytes.	Li YR, Zhu ZN, Li YQ, Xiao M, Han MX, Wadaan MAM, Hozzein WN, An DD, Li WJ.	Int J Syst Evol Microbiol	10.1099/ijsem.0.003092	2018
Phylogeny	Description of Alicyclobacillus montanus sp. nov., a mixotrophic bacterium isolated from acidic hot springs.	Lopez G, Diaz-Cardenas C, David Alzate J, Gonzalez LN, Shapiro N, Woyke T, Kyrpides NC, Restrepo S, Baena S.	Int J Syst Evol Microbiol	10.1099/ijsem.0.002718	2018
Metabolism	Microbacterium lindanitolerans sp. nov., isolated from hexachlorocyclohexane-contaminated soil.	Lal D, Gupta SK, Schumann P, Lal R.	Int J Syst Evol Microbiol	10.1099/ijs.0.017699-0	2010
Enzymology	Zhihengliuella salsuginis sp. nov., a moderately halophilic actinobacterium from a subterranean brine.	Chen YG, Tang SK, Zhang YQ, Liu ZX, Chen QH, He JW, Cui XL, Li WJ.	Extremophiles	10.1007/s00792-010-0317-4	2010
Phylogeny	Marinococcus luteus sp. nov., a halotolerant bacterium isolated from a salt lake, and emended description of the genus Marinococcus.	Wang Y, Cao LL, Tang SK, Lou K, Mao PH, Jin X, Jiang CL, Xu LH, Li WJ.	Int J Syst Evol Microbiol	10.1099/ijs.0.009670-0	2009
Phylogeny	Corynebacterium marinum sp. nov. isolated from coastal sediment.	Du ZJ, Jordan EM, Rooney AP, Chen GJ, Austin B	Int J Syst Evol Microbiol	10.1099/ijs.0.018523-0	2009
Phylogeny	Corynebacterium maris sp. nov., a marine bacterium isolated from the mucus of the coral Fungia granulosa.	Ben-Dov E, Ben Yosef DZ, Pavlov V, Kushmaro A	Int J Syst Evol Microbiol	10.1099/ijs.0.007468-0	2009
Phylogeny	Corynebacterium halotolerans sp. nov., isolated from saline soil in the west of China.	Chen HH, Li WJ, Tang SK, Kroppenstedt RM, Stackebrandt E, Xu LH, Jiang CL	Int J Syst Evol Microbiol	10.1099/ijs.0.02919-0	2004

References

#11998	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44683
#20094	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#23194	Hua-Hong Chen, Wen-Jun Li, Shu-Kun Tang, Reiner M. Kroppenstedt, Erko Stackebrandt, Li-Hua Xu, Cheng-Lin Jiang: Corynebacterium halotolerans sp. nov., isolated from saline soil in the west of China. IJSEM 54: 779 - 782 2004 ( DOI 10.1099/ijs.0.02919-0 , PubMed 15143024 )
#26450	IJSEM 779 2004 ( DOI 10.1099/ijs.0.02929-0 , PubMed 14742500 )
#30093	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26450
#37454	; Curators of the CIP;
#60217	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54529
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#119824	Collection of Institut Pasteur ; Curators of the CIP; CIP 108972
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Corynebacterium halotolerans (CCUG 54529, DSM 44683, CCTCC AA 001024)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Pathway annotation

API coryne

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000341345

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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