Corynebacterium casei (CCUG 57201, CIP 107182, DSM 44701)

Name: Corynebacterium casei (CCUG 57201, CIP 107182, DSM 44701)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3207

Type strain

Culture col. no. CCUG 57201 CIP 107182 DSM 44701 DPC 5298 LMG S-19264 3 more

NCBI tax ID(s) 1285583 160386

Special Collections DSMZ CCUG JCM CIP Literature strains

History <- NCIMB 2001, T. M. Cogan, Ireland: strain DPC 5298 NCIMB 30130 <-- T. M. Cogan DPC 5298. CIP <- 2001, T.M. Cogan, National Dairy Products Research Centre (DPRC), Fermoy, County Cork, Ireland: strain DPC 5298

Links

Corynebacterium casei CCUG 57201 is a facultative anaerobe, mesophilic, Gram-positive prokaryote that forms circular colonies and was isolated from cheese.

Gram-positive rod-shaped colony-forming facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 88347

LMG19264,DSM 44701,JCM 12072,CIP 107182,NCIMB 30130,CCUG 57201T

@ref 20215

Last LPSN update 2025-12-16 09:47:29

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium casei

Full scientific name Corynebacterium casei Brennan et al. 2001

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell shape	Confidence
23192	positive	1-3 µm	rod-shaped
117198	positive		rod-shaped
125438				92.5

Colony morphology

@ref	Colony size	Colony color	Colony shape	Medium used	Hemolysis ability
23192	1 mm	cream	circular	Funke media
117198					1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
11892	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
11892	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
23192	Funke media
32858	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
117198	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
11892	positive	growth	30	mesophilic
32858	positive	growth	30	mesophilic
61235	positive	growth	30	mesophilic
67770	positive	growth	28	mesophilic
117198	positive	growth	15-37
117198	negative	growth	10
117198	negative	growth	41
117198	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
23192	facultative anaerobe
61235	aerobe
117198	obligate aerobe

Spore formation

23192

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
117198	NaCl	positive	growth	0-10 %

Observation

67770

Observationquinones: MK-9(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23192	16808 ChEBI	2-dehydro-D-gluconate	-	builds acid from
23192	27613 ChEBI	amygdalin	-	builds acid from
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
23192	18305 ChEBI	arbutin	-	builds acid from
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
23192	17057 ChEBI	cellobiose	-	builds acid from
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
117198	16947 ChEBI	citrate	-	carbon source
23192	17108 ChEBI	D-arabinose	-	builds acid from
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
23192	18333 ChEBI	D-arabitol	-	builds acid from
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
23192	28847 ChEBI	D-fucose	-	builds acid from
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
23192	62318 ChEBI	D-lyxose	-	builds acid from
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
23192	16443 ChEBI	D-tagatose	-	builds acid from
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
23192	65327 ChEBI	D-xylose	-	builds acid from
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
23192	17113 ChEBI	erythritol	-	builds acid from
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
23192	4853 ChEBI	esculin	-	hydrolysis
117198	4853 ChEBI	esculin	-	hydrolysis
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
23192	28757 ChEBI	fructose	+	builds acid from
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
23192	5291 ChEBI	gelatin	-	hydrolysis
23192	28066 ChEBI	gentiobiose	-	builds acid from
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
23192	24265 ChEBI	gluconate	-	builds acid from
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
23192	17234 ChEBI	glucose	+	builds acid from
23192	17754 ChEBI	glycerol	-	builds acid from
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
23192	28087 ChEBI	glycogen	-	builds acid from
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
117198	606565 ChEBI	hippurate	-	hydrolysis
23192	15443 ChEBI	inulin	-	builds acid from
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
23192	30849 ChEBI	L-arabinose	-	builds acid from
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
23192	18403 ChEBI	L-arabitol	-	builds acid from
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
23192	18287 ChEBI	L-fucose	-	builds acid from
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
23192	65328 ChEBI	L-xylose	-	builds acid from
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
23192	17716 ChEBI	lactose	-	builds acid from
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
23192	17306 ChEBI	maltose	-	builds acid from
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
23192	37684 ChEBI	mannose	+	builds acid from
23192	6731 ChEBI	melezitose	-	builds acid from
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
23192	28053 ChEBI	melibiose	-	builds acid from
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
23192	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
23192	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
23192	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
23192	17632 ChEBI	nitrate	+	reduction
117198	17632 ChEBI	nitrate	+	reduction
117198	17632 ChEBI	nitrate	-	respiration
117198	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
23192	16634 ChEBI	raffinose	-	builds acid from
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
23192	15963 ChEBI	ribitol	-	builds acid from
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
23192	33942 ChEBI	ribose	+	builds acid from
23192	17814 ChEBI	salicin	-	builds acid from
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
23192	30911 ChEBI	sorbitol	-	builds acid from
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
23192	17992 ChEBI	sucrose	-	builds acid from
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
23192	32528 ChEBI	turanose	-	builds acid from
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
23192	18186 ChEBI	tyrosine	-	hydrolysis
23192	16199 ChEBI	urea	-	hydrolysis
23192	17151 ChEBI	xylitol	-	builds acid from
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
117198	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
117198	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
117198	15688 ChEBI	acetoin	-
117198	17234 ChEBI	glucose		+

Enzymes

@ref	Value	Activity	Ec
23192	acid phosphatase	+	3.1.3.2
68382	acid phosphatase	+	3.1.3.2	from API zym
117198	alcohol dehydrogenase	-	1.1.1.1
23192	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
23192	alpha-galactosidase	-	3.2.1.22
68382	alpha-galactosidase	-	3.2.1.22	from API zym
23192	alpha-glucosidase	-	3.2.1.20
68382	alpha-glucosidase	-	3.2.1.20	from API zym
23192	alpha-mannosidase	-	3.2.1.24
68382	alpha-mannosidase	-	3.2.1.24	from API zym
117198	amylase	-
23192	beta-galactosidase	-	3.2.1.23
68382	beta-galactosidase	-	3.2.1.23	from API zym
117198	beta-galactosidase	-	3.2.1.23
23192	beta-glucosidase	-	3.2.1.21
68382	beta-glucosidase	-	3.2.1.21	from API zym
23192	beta-glucuronidase	-	3.2.1.31
68382	beta-glucuronidase	-	3.2.1.31	from API zym
117198	caseinase	-	3.4.21.50
23192	catalase	+	1.11.1.6
117198	catalase	+	1.11.1.6
23192	chymotrypsin	-	3.4.4.5
23192	cystine arylamidase	+	3.4.11.3
68382	cystine arylamidase	-	3.4.11.3	from API zym
23192	cytochrome oxidase	-	1.9.3.1
117198	DNase	-
23192	esterase	+
68382	esterase (C 4)	+		from API zym
23192	esterase lipase (C 8)	+
68382	esterase lipase (C 8)	+		from API zym
117198	gamma-glutamyltransferase	-	2.3.2.2
117198	gelatinase	-
117198	lecithinase	-
23192	leucine arylamidase	+	3.4.11.1
68382	leucine arylamidase	+	3.4.11.1	from API zym
23192	lipase	-
117198	lipase	-
68382	lipase (C 14)	-		from API zym
117198	lysine decarboxylase	-	4.1.1.18
23192	N-acetyl-beta-glucosaminidase	-	3.2.1.52
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
117198	ornithine decarboxylase	-	4.1.1.17
117198	oxidase	-
117198	phenylalanine ammonia-lyase	-	4.3.1.24
117198	protease	-
23192	pyrazinamidase	+	3.5.1.B15
23192	trypsin	-	3.4.21.4
68382	trypsin	-	3.4.21.4	from API zym
117198	tryptophan deaminase	-
117198	tween esterase	-
117198	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
117198	-	-	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
117198	not determinedn.d.	-	-	-	-	+	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
117198	not determinedn.d.	+	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	-	+	-	+	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Dairy product

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
11892	cheese
23192	surface of a smear-ripened cheese
61235	Cheese,surface of smear-ripened cheese	1998	Cork	Ireland	IRL	Europe
67770	Surface of a smear-ripened cheese			Ireland	IRL	Europe
117198	Food, Cheese			Ireland	IRL	Europe	1998

Taxonmaps

69479

Global distribution of 16S sequence AF267152 (>99% sequence identity) for Corynebacterium casei subclade from Microbeatlas

Aquatic Samples	402
Soil Samples	272
Animal Samples	3725
Plant Samples	64
Total Samples	4463

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11892	1	Risk group (German classification) According to TRBA 466
117198	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM55078v1 assembly for Corynebacterium casei LMG S-19264	complete	GCA_000550785	1285583.3	2558860241	1285583	98.89

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
11892	Corynebacterium casei LMG S-19264 16S ribosomal RNA gene, partial sequence	AF267152	1343	1285583
124043	Corynebacterium casei strain LMG S-19264(T) 16S ribosomal RNA gene, partial sequence.	MN686661	531	160386
124043	Corynebacterium casei strain LMG S-19264(T) 16S ribosomal RNA gene, partial sequence.	MH298659	670	160386
124043	Corynebacterium casei LMG S-19264 16S ribosomal RNA gene, partial sequence.	PQ248438	601	1285583

GC content

@ref	GC-content (mol%)	Method
11892	51
67770	51	high performance liquid chromatography (HPLC)
67770	55.7	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Corynebacterium casei LMG S-19264
PATRIC: 1285583.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	84.10	no
125439	gram_stain	BacteriaNetⓘ	positive	72.30	no
125439	motility	BacteriaNetⓘ	no	80.70	no
125439	spore_formation	BacteriaNetⓘ	no	87.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium casei LMG S-19264
PATRIC: 1285583.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.01	yes
125438	anaerobic	anaerobicⓘ	no	95.48	yes
125438	spore-forming	spore-formingⓘ	no	78.60	no
125438	aerobic	aerobicⓘ	yes	75.39	no
125438	thermophilic	thermophileⓘ	no	94.00	no
125438	flagellated	motile2+ⓘ	no	92.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	In Silico Prediction and Analysis of Unusual Lantibiotic Resistance Operons in the Genus Corynebacterium.	Goldbeck O, Weixler D, Eikmanns BJ, Riedel CU.	Microorganisms	10.3390/microorganisms9030646	2021
	Identification and Characterization of Corynaridin, a Novel Linaridin from Corynebacterium lactis.	Pashou E, Reich SJ, Reiter A, Weixler D, Eikmanns BJ, Oldiges M, Riedel CU, Goldbeck O.	Microbiol Spectr	10.1128/spectrum.01756-22	2023
Enzymology	Quantitative detection of Corynebacterium casei in cheese by real-time PCR.	Monnet C, Correia K, Sarthou AS, Irlinger F.	Appl Environ Microbiol	10.1128/aem.01303-06	2006
Metabolism	Growth of aerobic ripening bacteria at the cheese surface is limited by the availability of iron.	Monnet C, Back A, Irlinger F.	Appl Environ Microbiol	10.1128/aem.00085-12	2012
Genetics	Comparative genomic analysis of Brevibacterium strains: insights into key genetic determinants involved in adaptation to the cheese habitat.	Pham NP, Layec S, Dugat-Bony E, Vidal M, Irlinger F, Monnet C.	BMC Genomics	10.1186/s12864-017-4322-1	2017
	Internal and external microbiota of home-caught Anopheles coluzzii (Diptera: Culicidae) from Côte d'Ivoire, Africa: Mosquitoes are filthy.	Chen K, Ponnusamy L, Mouhamadou CS, Fodjo BK, Sadia GC, Affoue FPK, Deguenon JM, Roe RM.	PLoS One	10.1371/journal.pone.0278912	2022
	A Novel Strategy for Detecting Recent Horizontal Gene Transfer and Its Application to Rhizobium Strains.	Li X, Tong W, Wang L, Rahman SU, Wei G, Tao S.	Front Microbiol	10.3389/fmicb.2018.00973	2018
Metabolism	Assessment of the in vitro antimicrobial activity of Lactobacillus species for identifying new potential antibiotics.	Dubourg G, Elsawi Z, Raoult D.	Int J Antimicrob Agents	10.1016/j.ijantimicag.2015.05.011	2015
Genetics	Mobilome of Brevibacterium aurantiacum Sheds Light on Its Genetic Diversity and Its Adaptation to Smear-Ripened Cheeses.	Levesque S, de Melo AG, Labrie SJ, Moineau S.	Front Microbiol	10.3389/fmicb.2019.01270	2019
	Glucosinolate content of blanched cabbage (Brassica oleracea var. capitata) fermented by the probiotic strain Lactobacillus paracasei LMG-P22043	Sarvan I, Valerio F, Lonigro SL, de Candia S, Verkerk R, Dekker M, Lavermicocca P.	Food Res Int	10.1016/j.foodres.2013.07.065	2013
Metabolism	Efficient utilization of ectoine by halophilic Brevibacterium species and Escherichia coli subjected to osmotic downshock.	Nagata S, Wang C.	J Biosci Bioeng	10.1263/jbb.99.61	2005
	Effect of Lactic Acid Fermentation on Volatile Compounds and Sensory Characteristics of Mango (Mangifera indica) Juices.	Mandha J, Shumoy H, Devaere J, Schouteten JJ, Gellynck X, De Winne A, Matemu AO, Raes K.	Foods	10.3390/foods11030383	2022
	Clinical and Microbiological Effect of a Multispecies Probiotic Supplementation in Celiac Patients With Persistent IBS-type Symptoms: A Randomized, Double-Blind, Placebo-controlled, Multicenter Trial.	Francavilla R, Piccolo M, Francavilla A, Polimeno L, Semeraro F, Cristofori F, Castellaneta S, Barone M, Indrio F, Gobbetti M, De Angelis M.	J Clin Gastroenterol	10.1097/mcg.0000000000001023	2019
	Effect of Moist Cooking Blanching on Colour, Phenolic Metabolites and Glucosinolate Content in Chinese Cabbage (Brassica rapa L. subsp. chinensis).	Managa MG, Remize F, Garcia C, Sivakumar D.	Foods	10.3390/foods8090399	2019
	Probiotics in Celiac Disease.	Cristofori F, Indrio F, Miniello VL, De Angelis M, Francavilla R.	Nutrients	10.3390/nu10121824	2018
Enzymology	Screening of Lactobacillus spp. for the prevention of Pseudomonas aeruginosa pulmonary infections.	Alexandre Y, Le Berre R, Barbier G, Le Blay G.	BMC Microbiol	10.1186/1471-2180-14-107	2014
Metabolism	Overexpression of genes encoding glycolytic enzymes in Corynebacterium glutamicum enhances glucose metabolism and alanine production under oxygen deprivation conditions.	Yamamoto S, Gunji W, Suzuki H, Toda H, Suda M, Jojima T, Inui M, Yukawa H.	Appl Environ Microbiol	10.1128/aem.07998-11	2012
	Development of innovative pediocin PA-1 by DNA shuffling among class IIa bacteriocins.	Tominaga T, Hatakeyama Y.	Appl Environ Microbiol	10.1128/aem.00558-07	2007
Enzymology	Dynamics and biodiversity of populations of lactic acid bacteria and acetic acid bacteria involved in spontaneous heap fermentation of cocoa beans in Ghana.	Camu N, De Winter T, Verbrugghe K, Cleenwerck I, Vandamme P, Takrama JS, Vancanneyt M, De Vuyst L.	Appl Environ Microbiol	10.1128/aem.02189-06	2007
	The progressive shift in anaerobic digestion communities under extreme propionate levels led to a redundant microbiome capable of producing methane.	Ochoa-Bernal TG, Huber DH, Espinosa-Solares T.	J Environ Manage	10.1016/j.jenvman.2025.127698	2025
Enzymology	Identification and characterization of an ene-reductase from Corynebacterium casei.	Wu S, Ma X, Yan H.	Int J Biol Macromol	10.1016/j.ijbiomac.2024.130427	2024
	Microbiological, physicochemical, and sensory changes throughout ripening of an experimental soft smear-ripened cheese in relation to salt concentrations.	Leclercq-Perlat MN, Saint-Eve A, Picque D, Trelea IC.	J Dairy Sci	10.3168/jds.2024-24307	2024
	Quantifying microbial interactions based on compositional data using an iterative approach for solving generalized Lotka-Volterra equations.	Huang Y, Tang T, Dai X, Sun F.	PLoS Comput Biol	10.1371/journal.pcbi.1013691	2025
	Comparative analysis of milk bacteria by two MALDI-MS systems.	Palczynska J, Pryshchepa O, Ludwiczak A, Arendowski A, Sibinska E, Radtke A, Pomastowski P.	Sci Rep	10.1038/s41598-025-21019-0	2025
Genetics	Gut Microbiome-Host Genetics Co-Evolution Shapes Adiposity by Modulating Energy and Lipid Metabolism in Selectively Bred Broiler Chickens.	Gao G, Jiao Y, Kwok LY, Zhong Z.	Animals (Basel)	10.3390/ani14223174	2024
	Bacterial and fungal communities and their predictive functional profiles in kinema, a naturally fermented soybean food of India, Nepal and Bhutan	Kharnaior P, Tamang JP.	Food Res Int		2022
Metabolism	Effects and mechanisms of fermentation media on sensory qualities, nonvolatile components, and microbiota in cigar tobacco leaves.	Zhang Q, Liu J, Chai Z, Yang S, Jia Y, Zhang H, Ji X, Lei J, Li D.	Front Bioeng Biotechnol	10.3389/fbioe.2025.1578001	2025
	Bacterial and fungal communities and their predictive functional profiles in kinema, a naturally fermented soybean food of India, Nepal and Bhutan.	Kharnaior P, Tamang JP.	Food Res Int	10.1016/j.foodres.2020.110055	2021
Metabolism	Impact of gut microbiota composition on black cutworm, Agrotis ipsilon (hufnagel) metabolic indices and pesticide degradation.	ElKraly OA, Awad M, El-Saadany HM, Hassanein SE, Elrahman TA, Elnagdy SM.	Anim Microbiome	10.1186/s42523-023-00264-6	2023
Phylogeny	Combined analysis of 16S rRNA gene sequencing data reveals core vaginal bacteria across livestock species.	Jonas LC, Youngs CR, Schmitz-Esser S.	Front Microbiol	10.3389/fmicb.2025.1524000	2025
Enzymology	Microbial community dynamics of a blue-veined raw milk cheese from the United Kingdom.	Yunita D, Dodd CER.	J Dairy Sci	10.3168/jds.2017-14104	2018
Pathogenicity	Correlation of periodontitis with hepatic and intestinal inflammation and glycemic control, and effects of bioconverted Artemisia herba-alba by Lactiplantibacillus plantarum SMFM2016-RK.	Lee Y, Yoon Y, Choi KH.	J Oral Microbiol	10.1080/20002297.2025.2473246	2025
	Succession, Replacement, and Modification of Chicken Litter Microbiota.	Kubasova T, Faldynova M, Crhanova M, Karasova D, Zeman M, Babak V, Rychlik I.	Appl Environ Microbiol	10.1128/aem.01809-22	2022
	Design of microbial consortia for the fermentation of pea-protein-enriched emulsions.	Ben-Harb S, Saint-Eve A, Panouille M, Souchon I, Bonnarme P, Dugat-Bony E, Irlinger F.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2019.01.012	2019
	Use of smear bacteria and yeasts to modify flavour and appearance of Cheddar cheese	Bertuzzi AS, Kilcawley KN, Sheehan JJ, O'Sullivan MG, Kennedy D, McSweeney PLH, Rea MC.	Int Dairy J	10.1016/j.idairyj.2017.04.001	2017
	Environmental determinants and demographic influences on global urban microbiomes, antimicrobial resistance and pathogenicity.	Chen Y, Fu X, Ou Z, Li J, Lin S, Wu Y, Wang X, Deng Y, Sun Y.	NPJ Biofilms Microbiomes	10.1038/s41522-023-00459-4	2023
	Typeability of MALDI-TOF assay for identification of non-aureus staphylococci associated with bovine intramammary infections and teat apex colonization.	Mahmmod YS, Nonnemann B, Svennesen L, Pedersen K, Klaas IC.	J Dairy Sci	10.3168/jds.2018-14579	2018
	Gut microbiota and their relationship with circulating adipokines in an acute hepatic encephalopathy mouse model induced by surgical bile duct ligation.	Lee B, Jo D, Park J, Kim OY, Song J.	Heliyon	10.1016/j.heliyon.2024.e38534	2024
Genetics	Diet-induced changes in the jejunal microbiota of developing broilers reduce the abundance of Enterococcus hirae and Enterococcus faecium.	Stege PB, Schokker D, Harders F, Kar SK, Stockhofe N, Perricone V, Rebel JMJ, de Jong IC, Bossers A.	BMC Genomics	10.1186/s12864-024-10496-8	2024
	New insights into the cultivability of human milk bacteria from ingestion to digestion and implications for their Immunomodulatory properties.	Le Bras C, Mouchard A, Rault L, Cochet MF, Menard O, Jacquet N, Chuat V, Valence F, Le Loir Y, Bellanger A, Deglaire A, Le Huerou-Luron I, Even S.	Sci Rep	10.1038/s41598-025-95668-6	2025
	Large-Scale Field Trials of an Eimeria Vaccine Induce Positive Effects on the Production Index of Broilers.	Nguyen BT, Yim D, Flores RA, Lee SY, Kim WH, Jung SH, Kim S, Min W.	Vaccines (Basel)	10.3390/vaccines12070800	2024
	Safety and efficacy of concentrated liquid l-lysine (base) and l-lysine monohydrochloride produced by fermentation with Corynebacterium casei KCCM 80190 as feed additives for all animal species.	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Bampidis V, Azimonti G, Bastos ML, Christensen H, Dusemund B, Kouba M, Durjava MF, Lopez-Alonso M, Lopez Puente S, Marcon F, Mayo B, Pechova A, Petkova M, Ramos F, Ramos F, Sanz Y, Villa RE, Woutersen R, Cocconcelli PS, Glandorf B, Herman L, Maradona MP, Saarela M, Anguita M, Galobart J, Holczkencht O, Manini P, Pettenati E, Pizzo F, Tarres-Call J.	EFSA J	10.2903/j.efsa.2020.6285	2020
	Effect of packaging materials, environmental factors and rRNA transcriptional activity of surface microflora on red-smear cheese defect development	Amato L, Ritschard JS, Sprecher I, Lacroix C, Schuppler M, Meile L.	Int Dairy J	10.1016/j.idairyj.2014.08.022	2015
Phylogeny	Microbiota characterization of a Belgian protected designation of origin cheese, Herve cheese, using metagenomic analysis.	Delcenserie V, Taminiau B, Delhalle L, Nezer C, Doyen P, Crevecoeur S, Roussey D, Korsak N, Daube G.	J Dairy Sci	10.3168/jds.2014-8225	2014
	Survival of cheese-ripening microorganisms in a dynamic simulator of the gastrointestinal tract.	Adouard N, Magne L, Cattenoz T, Guillemin H, Foligne B, Picque D, Bonnarme P.	Food Microbiol	10.1016/j.fm.2015.03.002	2016
	Porcine Brain Enzyme Hydrolysate Enhances Immune Function and Antioxidant Defense via Modulation of Gut Microbiota in a Cyclophosphamide-Induced Immunodeficiency Model.	Yue Y, Yang HJ, Zhang T, Li C, Kim MJ, Kim KN, Park S.	Antioxidants (Basel)	10.3390/antiox13040476	2024
	The ultra-structural, metabolomic and metagenomic characterisation of the sudanese smokeless tobacco 'Toombak'.	Sami A, Elimairi I, Patangia D, Watkins C, Ryan CA, Ross RP, Stanton C.	Toxicol Rep	10.1016/j.toxrep.2021.07.008	2021
Genetics	Genome sequence of Corynebacterium casei UCMA 3821, isolated from a smear-ripened cheese.	Monnet C, Loux V, Bento P, Gibrat JF, Straub C, Bonnarme P, Landaud S, Irlinger F.	J Bacteriol	10.1128/jb.06496-11	2012
	Exploring the presence of oral bacteria in non-oral sites of patients with cardiovascular diseases using whole metagenomic data.	Chopra A, Franco-Duarte R, Rajagopal A, Choowong P, Soares P, Rito T, Eberhard J, Jayasinghe TN.	Sci Rep	10.1038/s41598-023-50891-x	2024
	Microbiome mapping in dairy industry reveals new species and genes for probiotic and bioprotective activities.	De Filippis F, Valentino V, Yap M, Cabrera-Rubio R, Barcenilla C, Carlino N, Cobo-Diaz JF, Quijada NM, Calvete-Torre I, Ruas-Madiedo P, Sabater C, Sequino G, Pasolli E, Wagner M, Margolles A, Segata N, Alvarez-Ordonez A, Cotter PD, Ercolini D.	NPJ Biofilms Microbiomes	10.1038/s41522-024-00541-5	2024
	Metabarcoding analysis of the microbiota in flocks naturally infected by Coxiella burnetii: First description of the global microbiota in domestic small ruminants.	Toledo-Perona R, Gomez-Martin A, Contreras A, Toquet M, Quereda JJ, Esnal A, Gonzalez-Torres P, Gomis J.	One Health	10.1016/j.onehlt.2025.100996	2025
	Autoinducer-2 activity produced by bacteria found in smear of surface ripened cheeses	Gori K, Moslehi-Jenabian S, Purrotti M, Jespersen L.	Int Dairy J	10.1016/j.idairyj.2010.06.009	2011
Phylogeny	Biodiversity of the Surface Microbial Consortia from Limburger, Reblochon, Livarot, Tilsit, and Gubbeen Cheeses.	Cogan TM, Goerges S, Gelsomino R, Larpin S, Hohenegger M, Bora N, Jamet E, Rea MC, Mounier J, Vancanneyt M, Gueguen M, Desmasures N, Swings J, Goodfellow M, Ward AC, Sebastiani H, Irlinger F, Chamba JF, Beduhn R, Scherer S.	Microbiol Spectr	10.1128/microbiolspec.cm-0010-2012	2014
Biotechnology	The detailed analysis of the microbiome and resistome of artisanal blue-veined cheeses provides evidence on sources and patterns of succession linked with quality and safety traits.	Alexa EA, Cobo-Diaz JF, Renes E, O Callaghan TF, Kilcawley K, Mannion D, Skibinska I, Ruiz L, Margolles A, Fernandez-Gomez P, Alvarez-Molina A, Puente-Gomez P, Crispie F, Lopez M, Prieto M, Cotter PD, Alvarez-Ordonez A.	Microbiome	10.1186/s40168-024-01790-4	2024
	A comprehensive, large-scale analysis of "terroir" cheese and milk microbiota reveals profiles strongly shaped by both geographical and human factors.	Irlinger F, Mariadassou M, Dugat-Bony E, Rue O, Neuveglise C, Renault P, Rifa E, Theil S, Loux V, Cruaud C, Gavory F, Barbe V, Lasbleiz R, Gaucheron F, Spelle C, Delbes C.	ISME Commun	10.1093/ismeco/ycae095	2024
	Anti-listerial potential of food-borne yeasts in red smear cheese	Goerges S, Koslowsky M, Velagic S, Borst N, Bockelmann W, Heller KJ, Scherer S.	Int Dairy J	10.1016/j.idairyj.2010.08.002	2011
	Dominant bacterial communities in the rumen of Gayals (Bos frontalis), Yaks (Bos grunniens) and Yunnan Yellow Cattle (Bos taurs) revealed by denaturing gradient gel electrophoresis.	Leng J, Xie L, Zhu R, Yang S, Gou X, Li S, Mao H.	Mol Biol Rep	10.1007/s11033-010-0627-8	2011
	Treatment with Distinct Antibiotic Classes Causes Different Pulmonary Outcomes on Allergic Airway Inflammation Associated with Modulation of Symbiotic Microbiota.	Cavalcante GG, Guimaraes AG, Queiroz-Glauss CP, Goncalves Pereira MH, Dias ASL, Horta LS, de Oliveira JS, Cangussu SD, Magalhaes PP, Russo RC, Santiago HC.	J Immunol Res	10.1155/2022/1466011	2022
	Inference of Significant Microbial Interactions From Longitudinal Metagenomics Data.	Gao X, Huynh BT, Guillemot D, Glaser P, Opatowski L.	Front Microbiol	10.3389/fmicb.2018.02319	2018
	Next-generation sequencing analysis of bacterial flora in bovine protothecal mastitic milk and feces.	Miura A, Kurumisawa T, Kano R, Ito T, Suzuki K, Kamata H.	J Vet Med Sci	10.1292/jvms.18-0649	2019
	Microbial Interactions within the Cheese Ecosystem and Their Application to Improve Quality and Safety.	Mayo B, Rodriguez J, Vazquez L, Florez AB.	Foods	10.3390/foods10030602	2021
Genetics	Species classifier choice is a key consideration when analysing low-complexity food microbiome data.	Walsh AM, Crispie F, O'Sullivan O, Finnegan L, Claesson MJ, Cotter PD.	Microbiome	10.1186/s40168-018-0437-0	2018
	Rapid analysis of two food-borne microbial communities at the species level by Fourier-transform infrared microspectroscopy.	Wenning M, Theilmann V, Scherer S.	Environ Microbiol	10.1111/j.1462-2920.2005.00971.x	2006
Enzymology	Stability of the biodiversity of the surface consortia of Gubbeen, a red-smear cheese.	Rea MC, Gorges S, Gelsomino R, Brennan NM, Mounier J, Vancanneyt M, Scherer S, Swings J, Cogan TM.	J Dairy Sci	10.3168/jds.2006-377	2007
Biotechnology	Growth and colour development of some surface ripening bacteria with Debaryomyces hansenii on aseptic cheese curd.	Mounier J, Irlinger F, Leclercq-Perlat MN, Sarthou AS, Spinnler HE, Fitzgerald GF, Cogan TM.	J Dairy Res	10.1017/s0022029906001919	2006
Biotechnology	Sources of the adventitious microflora of a smear-ripened cheese.	Mounier J, Goerges S, Gelsomino R, Vancanneyt M, Vandemeulebroecke K, Hoste B, Brennan NM, Scherer S, Swings J, Fitzgerald GF, Cogan TM.	J Appl Microbiol	10.1111/j.1365-2672.2006.02922.x	2006
	Survival of surface ripening cultures during storage and monitoring their development on cheese.	Mounier J, Fitzgerald GF, Cogan TM.	Lett Appl Microbiol	10.1111/j.1472-765x.2006.01836.x	2006
	Cultures for the ripening of smear cheeses	Bockelmann W, Willems KP, Neve H, Heller KH.	Int Dairy J	10.1016/j.idairyj.2004.08.022	2005
	Overview of a surface-ripened cheese community functioning by meta-omics analyses.	Dugat-Bony E, Straub C, Teissandier A, Onesime D, Loux V, Monnet C, Irlinger F, Landaud S, Leclercq-Perlat MN, Bento P, Fraud S, Gibrat JF, Aubert J, Fer F, Guedon E, Pons N, Kennedy S, Beckerich JM, Swennen D, Bonnarme P.	PLoS One	10.1371/journal.pone.0124360	2015
	Safety and efficacy of a feed additive consisting of l-lysine monohydrochloride and l-lysine sulfate produced by fermentation with Corynebacterium glutamicumCGMCC 17927 for all animal species (Barentz Animal Nutrition B.V.).	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Bampidis V, Azimonti G, de Lourdes Bastos M, Christensen H, Dusemund B, Fasmon Durjava M, Kouba M, Lopez-Alonso M, Lopez Puente S, Marcon F, Mayo B, Pechova A, Petkova M, Ramos F, Sanz Y, Villa RE, Woutersen R, Anguita M, Brozzi R, Firmino J, Galobart J, Garcia Cazorla Y, Ortuno Casanova J, Pettenati E, Revez J, Tarres-Call J.	EFSA J	10.2903/j.efsa.2022.7613	2022
Phylogeny	Metagenomics and metabarcoding experimental choices and their impact on microbial community characterization in freshwater recirculating aquaculture systems.	Rieder J, Kapopoulou A, Bank C, Adrian-Kalchhauser I.	Environ Microbiome	10.1186/s40793-023-00459-z	2023
	Safety and efficacy of a feed additive consisting of l-lysine sulfate produced by Escherichia coli CGMCC 7.398 for all animal species (Kempex Holland B.V.).	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Bampidis V, Azimonti G, Bastos ML, Christensen H, Dusemund B, Fasmon Durjava M, Kouba M, Lopez-Alonso M, Lopez Puente S, Marcon F, Mayo B, Pechova A, Petkova M, Ramos F, Sanz Y, Villa RE, Woutersen R, Herman L, Galobart J, Pettenati E, Tarres-Call J.	EFSA J	10.2903/j.efsa.2022.7246	2022
	Safety and efficacy of a feed additive consisting of l-lysine sulfate produced by Corynebacterium glutamicum KCCM 80227 for all animal species (Daesang Europe BV).	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Bampidis V, Azimonti G, Bastos ML, Christensen H, Dusemund B, Fasmon Durjava M, Kouba M, Lopez-Alonso M, Lopez Puente S, Marcon F, Mayo B, Pechova A, Petkova M, Ramos F, Ramos F, Sanz Y, Villa RE, Woutersen R, Anguita M, Brozzi R, Galobart J, Pettenati E, Tarres-Call J.	EFSA J	10.2903/j.efsa.2021.6706	2021
Enzymology	Quantification of yeast and bacterial gene transcripts in retail cheeses by reverse transcription-quantitative PCR.	Monnet C, Straub C, Castellote J, Onesime D, Bonnarme P, Irlinger F.	Appl Environ Microbiol	10.1128/aem.02360-12	2013
Enzymology	Isolation and identification of the microbiota of Danish farmhouse and industrially produced surface-ripened cheeses.	Gori K, Ryssel M, Arneborg N, Jespersen L.	Microb Ecol	10.1007/s00248-012-0138-3	2013
Phylogeny	Partial denture metal framework may harbor potentially pathogenic bacteria.	Mengatto CM, Marchini L, Bernardes LA, Gomes SC, Silva AM, Rizzatti-Barbosa CM, Rizzatti-Barbosa CM.	J Adv Prosthodont	10.4047/jap.2015.7.6.468	2015
	A single bacterium restores the microbiome dysbiosis to protect bones from destruction in a rat model of rheumatoid arthritis.	Pan H, Guo R, Ju Y, Wang Q, Zhu J, Xie Y, Zheng Y, Li T, Liu Z, Lu L, Li F, Tong B, Xiao L, Xu X, Leung EL, Li R, Yang H, Wang J, Zhou H, Jia H, Liu L.	Microbiome	10.1186/s40168-019-0719-1	2019
	Update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA 10: Suitability of taxonomic units notified to EFSA until March 2019.	EFSA Panel on Biological Hazards (BIOHAZ), Koutsoumanis K, Allende A, Alvarez-Ordonez A, Bolton D, Bover-Cid S, Chemaly M, Davies R, De Cesare A, Hilbert F, Lindqvist R, Nauta M, Peixe L, Ru G, Simmons M, Skandamis P, Suffredini E, Cocconcelli PS, Fernandez Escamez PS, Maradona MP, Querol A, Suarez JE, Sundh I, Vlak J, Barizzone F, Correia S, Herman L.	EFSA J	10.2903/j.efsa.2019.5753	2019
	Host circadian behaviors exert only weak selective pressure on the gut microbiome under stable conditions but are critical for recovery from antibiotic treatment.	Zhao C, Kelly K, Jabbur ML, Paguaga M, Behringer M, Johnson CH.	PLoS Biol	10.1371/journal.pbio.3001865	2022
	Safety and efficacy of a feed additive consisting of concentrated liquid l-lysine, l-lysine monohydrochloride and concentrated liquid l-lysine monohydrochloride produced by Escherichia coliNITE BP-02917 for all animal species (Metex NoovistaGo).	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Bampidis V, Azimonti G, de Lourdes Bastos M, Christensen H, Dusemund B, Fasmon Durjava M, Kouba M, Lopez-Alonso M, Lopez Puente S, Marcon F, Mayo B, Pechova A, Petkova M, Ramos F, Sanz Y, Villa RE, Woutersen R, Glandorf D, Tosti L, Anguita M, Brozzi R, Firmino J, Galobart J, Garcia Cazorla Y, Ortuno Casanova J, Pettenati E, Revez J, Tarres-Call J.	EFSA J	10.2903/j.efsa.2022.7612	2022
	Dynamics of bacterial communities during the ripening process of different Croatian cheese types derived from raw ewe's milk cheeses.	Fuka MM, Wallisch S, Engel M, Welzl G, Havranek J, Schloter M.	PLoS One	10.1371/journal.pone.0080734	2013
	A survey of Type III restriction-modification systems reveals numerous, novel epigenetic regulators controlling phase-variable regulons; phasevarions.	Atack JM, Yang Y, Seib KL, Zhou Y, Jennings MP.	Nucleic Acids Res	10.1093/nar/gky192	2018
Genetics	Omics Approaches to Assess Flavor Development in Cheese.	Anastasiou R, Kazou M, Georgalaki M, Aktypis A, Zoumpopoulou G, Tsakalidou E.	Foods	10.3390/foods11020188	2022
	Microbial interactions within a cheese microbial community.	Mounier J, Monnet C, Vallaeys T, Arditi R, Sarthou AS, Helias A, Irlinger F.	Appl Environ Microbiol	10.1128/aem.01338-07	2008
Enzymology	Population dynamics of two antilisterial cheese surface consortia revealed by temporal temperature gradient gel electrophoresis.	Roth E, Miescher Schwenninger S, Hasler M, Eugster-Meier E, Lacroix C.	BMC Microbiol	10.1186/1471-2180-10-74	2010
	Surface microflora of four smear-ripened cheeses.	Mounier J, Gelsomino R, Goerges S, Vancanneyt M, Vandemeulebroecke K, Hoste B, Scherer S, Swings J, Fitzgerald GF, Cogan TM.	Appl Environ Microbiol	10.1128/aem.71.11.6489-6500.2005	2005
Phylogeny	A Review on the Applications of Next Generation Sequencing Technologies as Applied to Food-Related Microbiome Studies.	Cao Y, Fanning S, Proos S, Jordan K, Srikumar S.	Front Microbiol	10.3389/fmicb.2017.01829	2017
Metabolism	Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products.	Almeida M, Hebert A, Abraham AL, Rasmussen S, Monnet C, Pons N, Delbes C, Loux V, Batto JM, Leonard P, Kennedy S, Ehrlich SD, Pop M, Montel MC, Irlinger F, Renault P.	BMC Genomics	10.1186/1471-2164-15-1101	2014
	Integrons: Vehicles and pathways for horizontal dissemination in bacteria.	Domingues S, da Silva GJ, Nielsen KM.	Mob Genet Elements	10.4161/mge.22967	2012
Phylogeny	Biodiversity of the bacterial flora on the surface of a smear cheese.	Brennan NM, Ward AC, Beresford TP, Fox PF, Goodfellow M, Cogan TM.	Appl Environ Microbiol	10.1128/aem.68.2.820-830.2002	2002
Enzymology	Quantification of 2,4-diacetylphloroglucinol-producing Pseudomonas fluorescens strains in the plant rhizosphere by real-time PCR.	Mavrodi OV, Mavrodi DV, Thomashow LS, Weller DM.	Appl Environ Microbiol	10.1128/aem.00925-07	2007
Phylogeny	Temporal stability and biodiversity of two complex antilisterial cheese-ripening microbial consortia.	Maoz A, Mayr R, Scherer S.	Appl Environ Microbiol	10.1128/aem.69.7.4012-4018.2003	2003
Metabolism	Microbial community structure and dynamics of dark fire-cured tobacco fermentation.	Di Giacomo M, Paolino M, Silvestro D, Vigliotta G, Imperi F, Visca P, Alifano P, Parente D.	Appl Environ Microbiol	10.1128/aem.02378-06	2007
	Molecular fingerprinting of dairy microbial ecosystems by use of temporal temperature and denaturing gradient gel electrophoresis.	Ogier JC, Lafarge V, Girard V, Rault A, Maladen V, Gruss A, Leveau JY, Delacroix-Buchet A.	Appl Environ Microbiol	10.1128/aem.70.9.5628-5643.2004	2004
Biotechnology	Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation.	Schroder J, Maus I, Trost E, Tauch A.	BMC Genomics	10.1186/1471-2164-12-545	2011
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Metabolism	Improvement of the redox balance increases L-valine production by Corynebacterium glutamicum under oxygen deprivation conditions.	Hasegawa S, Uematsu K, Natsuma Y, Suda M, Hiraga K, Jojima T, Inui M, Yukawa H.	Appl Environ Microbiol	10.1128/aem.07056-11	2012
Genetics	Complete genome sequence of Corynebacterium casei LMG S-19264T (=DSM 44701T), isolated from a smear-ripened cheese.	Walter F, Albersmeier A, Kalinowski J, Ruckert C	J Biotechnol	10.1016/j.jbiotec.2014.08.038	2014
Genetics	Characterization of a new 2.4-kb plasmid of Corynebacterium casei and development of stable corynebacterial cloning vector.	Tsuchida Y, Kimura S, Suzuki N, Inui M, Yukawa H	Appl Microbiol Biotechnol	10.1007/s00253-008-1746-1	2008
Metabolism	Growth characteristics of Brevibacterium, Corynebacterium, Microbacterium, and Staphylococcus spp. isolated from surface-ripened cheese.	Mounier J, Rea MC, O'Connor PM, Fitzgerald GF, Cogan TM	Appl Environ Microbiol	10.1128/AEM.01260-07	2007
Biotechnology	Staphylococcus equorum subsp. linens, subsp. nov., a starter culture component for surface ripened semi-hard cheeses.	Place RB, Hiestand D, Gallmann HR, Teuber M.	Syst Appl Microbiol	10.1078/072320203322337281	2003
Phylogeny	Corynebacterium mooreparkense sp. nov. and Corynebacterium casei sp. nov., isolated from the surface of a smear-ripened cheese.	Brennan NM, Brown R, Goodfellow M, Ward AC, Beresford TP, Simpson PJ, Fox PF, Cogan TM	Int J Syst Evol Microbiol	10.1099/00207713-51-3-843	2001

References

#11892	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44701
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23192	N M Brennan, R Brown, M Goodfellow, A C Ward, T P Beresford, P J Simpson, P F Fox, T M Cogan: Corynebacterium mooreparkense sp. nov. and Corynebacterium casei sp. nov., isolated from the surface of a smear-ripened cheese.. IJSEM 51: 843 - 852 2001 ( DOI 10.1099/00207713-51-3-843 , PubMed 11411705 )
#32858	; Curators of the CIP;
#61235	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57201
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#117198	Collection of Institut Pasteur ; Curators of the CIP; CIP 107182
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Corynebacterium casei (CCUG 57201, CIP 107182, DSM 44701)

Name and taxonomic classification

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Physiology and metabolism

Oxygen tolerance

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Halophily

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Genome browser: GCA_000550785

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