Corynebacterium aurimucosum (DSM 44532, CCUG 47449, CIP 107897)

Name: Corynebacterium aurimucosum (DSM 44532, CCUG 47449, CIP 107897)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3199

Type strain

Culture col. no. DSM 44532 CCUG 47449 CIP 107897 JCM 11766 NRRL B-24143 1 more

NCBI tax ID(s) 169292

Special Collections DSMZ CCUG JCM CIP Wink compendium Literature strains

History <- A. F. Yassin, Univ. Bonn; IMMIB D-1488 DSM 44532 <-- A. F. Yassin IMMIB D-1488. CIP <- 2003, DSMZ <- A.F. Yassin, Bonn Univ., Bonn, Germany: strain IMMIB D-1488

Links

Corynebacterium aurimucosum DSM 44532 is a facultative anaerobe, Gram-positive, pleomorphic-shaped bacterium that was isolated from clinical material.

Gram-positive pleomorphic-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 94055

DSM 44532,NRRL B-24143,CCUG 47449,JCM 11766,CIP 107897

@ref 20215

Last LPSN update 2026-02-09 11:18:27

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium aurimucosum

Full scientific name Corynebacterium aurimucosum Yassin et al. 2002

Synonyms (1)

Corynebacterium nigricans

BacDive ID	Other strains from **Corynebacterium aurimucosum** (12)	Type strain
3200	C. aurimucosum CN-1, DSM 44827, ATCC 700975, CCUG 48176, ...
136116	C. aurimucosum CIP 102616
137625	C. aurimucosum CIP 101932
137812	C. aurimucosum 95.84, CIP 100709
144910	C. aurimucosum CCUG 27045
147374	C. aurimucosum CCUG 33483, ATCC 23346, NCTC 10284
148319	C. aurimucosum CCUG 35219
150270	C. aurimucosum CCUG 39456
151562	C. aurimucosum CCUG 44325
152546	C. aurimucosum CCUG 47034, ATCC 700540
154188	C. aurimucosum CCUG 52701
155537	C. aurimucosum CCUG 58034

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
23188	positive	pleomorphic-shaped
29952	positive	spiral-shaped
116637	positive	rod-shaped
125438			94.6
125438	positive		93.834

Colony morphology

@ref	Colony color	Incubation period	Medium used
20070	Beige (1001)	10-14 days	ISP 2
20070	Beige (1001)	10-14 days	ISP 3
20070	Beige (1001)	10-14 days	ISP 4
20070	Beige (1001)	10-14 days	ISP 5
20070	Beige (1001)	10-14 days	ISP 6
20070	Beige (1001)	10-14 days	ISP 7
23188	slightly yellow		Columbia blood agar supplemented with 5% sheep blood
116637

Multicellular morphology

@ref	Forms multicellular complex	Medium name
20070		ISP 2
20070		ISP 3
20070		ISP 4
20070		ISP 5
20070		ISP 6
20070		ISP 7

Pigmentation

29952

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
11738	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
11738	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
20070	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
20070	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
20070	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
20070	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
20070	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
20070	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
23188	Columbia blood agar supplemented with 5% sheep blood
40729	MEDIUM 6 - Columbia agar with 10 % horse blood		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
116637	CIP Medium 6	Medium recipe at CIP
116637	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
11738	positive	growth	37
20070	positive	optimum	37
40729	positive	growth	37
57696	positive	growth	37
67770	positive	growth	37
116637	positive	growth	25-41
116637	negative	growth	10
116637	negative	growth	15
116637	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
23188	facultative anaerobe
29952	aerobe
57696	aerobe
116637	facultative anaerobe
125439	obligate anaerobe	91.6

Spore formation

@ref	Spore formation	Confidence
23188
29952
125439		96.2

Halophily

@ref	Salt	Growth	Tested relation	Concentration
116637	NaCl	positive	growth	0-10 %

Observation

29952

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23188	27613 ChEBI	amygdalin	-	builds acid from
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
20070	22599 ChEBI	arabinose	-
23188	22599 ChEBI	arabinose	-	builds acid from
29952	22599 ChEBI	arabinose	+	carbon source
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
23188	17057 ChEBI	cellobiose	-	builds acid from
29952	17057 ChEBI	cellobiose	+	carbon source
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
20070	62968 ChEBI	cellulose	-
116637	16947 ChEBI	citrate	-	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68379	17634 ChEBI	D-glucose	+	fermentation	from API Coryne
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68379	16988 ChEBI	D-ribose	+	fermentation	from API Coryne
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
23188	4853 ChEBI	esculin	-	hydrolysis
29952	4853 ChEBI	esculin	+	hydrolysis
116637	4853 ChEBI	esculin	-	hydrolysis
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
20070	28757 ChEBI	fructose	-
23188	28757 ChEBI	fructose	+	builds acid from
29952	28757 ChEBI	fructose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
29952	28260 ChEBI	galactose	+	carbon source
23188	5291 ChEBI	gelatin	-	hydrolysis
29952	5291 ChEBI	gelatin	+	carbon source
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
20070	17234 ChEBI	glucose	+
23188	17234 ChEBI	glucose	+	builds acid from
23188	17754 ChEBI	glycerol	-	builds acid from
29952	17754 ChEBI	glycerol	+	carbon source
23188	28087 ChEBI	glycogen	-	builds acid from
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
23188	606565 ChEBI	hippurate	+	hydrolysis
116637	606565 ChEBI	hippurate	+	hydrolysis
23188	15443 ChEBI	inulin	-	builds acid from
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
23188	17716 ChEBI	lactose	-	builds acid from
29952	17716 ChEBI	lactose	+	carbon source
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
23188	17306 ChEBI	maltose	+	builds acid from
29952	17306 ChEBI	maltose	+	carbon source
68379	17306 ChEBI	maltose	+	fermentation	from API Coryne
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
20070	29864 ChEBI	mannitol	+
23188	29864 ChEBI	mannitol	-	builds acid from
29952	29864 ChEBI	mannitol	+	carbon source
23188	37684 ChEBI	mannose	-	builds acid from
29952	37684 ChEBI	mannose	+	carbon source
23188	6731 ChEBI	melezitose	-	builds acid from
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
29952	28053 ChEBI	melibiose	+	carbon source
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
29952	37657 ChEBI	methyl D-glucoside	+	carbon source
20070	17268 ChEBI	myo-inositol	+
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
29952	17632 ChEBI	nitrate	+	reduction
68379	17632 ChEBI	nitrate	+	reduction	from API Coryne
116637	17632 ChEBI	nitrate	-	reduction
116637	17632 ChEBI	nitrate	+	respiration
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
116637	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
116637	45285 ChEBI	pyrazinamide	+	hydrolysis
20070	16634 ChEBI	raffinose	-
23188	16634 ChEBI	raffinose	-	builds acid from
29952	16634 ChEBI	raffinose	+	carbon source
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
20070	26546 ChEBI	rhamnose	-
23188	26546 ChEBI	rhamnose	-	builds acid from
29952	26546 ChEBI	rhamnose	+	carbon source
23188	15963 ChEBI	ribitol	-	builds acid from
29952	15963 ChEBI	ribitol	+	carbon source
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
23188	33942 ChEBI	ribose	-	builds acid from
29952	33942 ChEBI	ribose	+	carbon source
23188	17814 ChEBI	salicin	-	builds acid from
29952	17814 ChEBI	salicin	+	carbon source
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
23188	30911 ChEBI	sorbitol	-	builds acid from
23188	28017 ChEBI	starch	-	hydrolysis
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
20070	17992 ChEBI	sucrose	+
23188	17992 ChEBI	sucrose	+	builds acid from
68379	17992 ChEBI	sucrose	+	fermentation	from API Coryne
23188	27082 ChEBI	trehalose	-	builds acid from
29952	27082 ChEBI	trehalose	+	carbon source
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
23188	27897 ChEBI	tryptophan	-	energy source
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
29952	53426 ChEBI	tween 80	+	carbon source
68379	16199 ChEBI	urea	+	hydrolysis	from API Coryne
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid
20070	18222 ChEBI	xylose	-
23188	18222 ChEBI	xylose	-	builds acid from
29952	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite
29952	16136 ChEBI	hydrogen sulfide
23188	35581 ChEBI	indole
68369	35581 ChEBI	indole	from API 20NE
116637	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test	Voges-proskauer-test	Methylred-test
116637	15688 ChEBI	acetoin		+
116637	17234 ChEBI	glucose			+
23188	35581 ChEBI	indole	-
68369	35581 ChEBI	indole	-			from API 20NE

Enzymes

@ref	Value	Activity	Ec
23188	acid phosphatase	-	3.1.3.2
116637	alcohol dehydrogenase	-	1.1.1.1
23188	alkaline phosphatase	+	3.1.3.1
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
23188	alpha-fucosidase	-	3.2.1.51
68382	alpha-fucosidase	-	3.2.1.51	from API zym
23188	alpha-galactosidase	-	3.2.1.22
68382	alpha-galactosidase	-	3.2.1.22	from API zym
23188	alpha-glucosidase	-	3.2.1.20
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
23188	alpha-mannosidase	-	3.2.1.24
68382	alpha-mannosidase	-	3.2.1.24	from API zym
116637	amylase	+
23188	arginine dihydrolase	-	3.5.3.6
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
23188	beta-galactosidase	-	3.2.1.23
68382	beta-galactosidase	-	3.2.1.23	from API zym
116637	beta-galactosidase	-	3.2.1.23
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
23188	beta-glucosidase	-	3.2.1.21
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
23188	beta-glucuronidase	-	3.2.1.31
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
116637	caseinase	-	3.4.21.50
23188	catalase	+	1.11.1.6
29952	catalase	+	1.11.1.6
116637	catalase	-	1.11.1.6
23188	chymotrypsin	-	3.4.4.5
23188	cystine arylamidase	-	3.4.11.3
68382	cystine arylamidase	-	3.4.11.3	from API zym
116637	DNase	-
23188	esterase (C 4)	-
68382	esterase (C 4)	+		from API zym
23188	esterase lipase (C 8)	-
116637	gamma-glutamyltransferase	-	2.3.2.2
116637	gelatinase	+/-
68379	gelatinase	-		from API Coryne
68369	gelatinase	-		from API 20NE
116637	lecithinase	+
23188	leucine arylamidase	+	3.4.11.1
68382	leucine arylamidase	+	3.4.11.1	from API zym
116637	lipase	-
23188	lipase (C 14)	-
116637	lysine decarboxylase	-	4.1.1.18
23188	N-acetyl-beta-glucosaminidase	-	3.2.1.52
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
23188	naphthol-AS-BI-phosphohydrolase	-
23188	nitrate reductase	-	1.7.99.4
116637	ornithine decarboxylase	-	4.1.1.17
116637	oxidase	-
116637	phenylalanine ammonia-lyase	-	4.3.1.24
23188	pyrazinamidase	+	3.5.1.B15
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
23188	pyrrolidonyl arylamidase	-	3.4.19.3
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
23188	trypsin	-	3.4.21.4
23188	tryptophan deaminase	-	4.1.99.1
116637	tryptophan deaminase	-
116637	tween esterase	-
23188	urease	-	3.5.1.5
116637	urease	-	3.5.1.5
68379	urease	+	3.5.1.5	from API Coryne
68369	urease	-	3.5.1.5	from API 20NE
23188	valine arylamidase	-
68382	valine arylamidase	-		from API zym

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
20070	+	-	-	+	-	-	-	-	-	+	-	not determinedn.d.	+	+	-	-	+	-	+	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
20070	not determinedn.d.	+	+	+	+	+	-	-	+	-	+	+	-	-	-	-	+	-	-	-
11738	-	+/-	+	+/-	-	+	-	-	+/-	-	+/-	+/-	-	-	-	-	+/-	-	-	-
116637	-	-	+	+	-	+	-	-	+	-	-	+	-	-	-	+	+	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
11738	-	-	-	-	-	+/-	-	-	+	+/-	+	+/-	+	+	+	-	+/-	+	+/-	+/-	not determinedn.d.

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
116637	not determinedn.d.	+/-	-	-	-	-	-	-	-	-	-	+/-	+/-	+/-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	+/-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
116637	not determinedn.d.	+	+	-	-	+	-	-	+	-	+	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	+	+	-	-	+	-	-	-	-	-	+	+	+	-	-	+	-	+	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Medical environment	#Clinic

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
11738	clinical material	Germany	DEU	Europe
57696	Human clinical specimen	Germany	DEU	Europe
67770	Clinical material	Germany	DEU	Europe
116637	Other, Clinical material	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence AJ309207 (>99% sequence identity) for Corynebacterium from Microbeatlas

Aquatic Samples	1398
Soil Samples	1053
Animal Samples	23824
Plant Samples	283
Total Samples	26558

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
11738	yes, in single cases	1	Risk group (German classification) According to TRBA 466
20070		2	German classification According to TRBA 466
116637		2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3040855v1 assembly for Corynebacterium aurimucosum DSM 44532	complete	GCA_030408555	169292.173		169292	89.42
124043	ASM1672870v1 assembly for Corynebacterium aurimucosum FDAARGOS_1109	complete	GCA_016728705	169292.149		169292	89.12
66792	ASM2413877v1 assembly for Corynebacterium aurimucosum DSM 44532	chromosome	GCA_024138775	169292.166	8116740515	169292	72.22
124043	ASM3952654v1 assembly for Corynebacterium aurimucosum JCM 11766	scaffold	GCA_039526545			169292	52.79

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Corynebacterium aurimucosum strain NRRL B-24143 16S ribosomal RNA gene, partial sequence	AY536427	1476		169292
11738	Corynebacterium aurimucosum partial 16S rRNA gene, strain IMMIB D-1488T	AJ309207	1475		169292

GC content

@ref	GC-content (mol%)	Method
67770	63.4-64	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Corynebacterium aurimucosum strain FDAARGOS_1109
PATRIC: 169292.149

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.20	no
125439	motility	BacteriaNetⓘ	no	67.60	no
125439	gram_stain	BacteriaNetⓘ	positive	87.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	91.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium aurimucosum strain FDAARGOS_1109 strain Not applicable
PATRIC: 169292.149

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	93.83	yes
125438	anaerobic	anaerobicⓘ	no	95.84	no
125438	spore-forming	spore-formingⓘ	no	82.96	no
125438	aerobic	aerobicⓘ	yes	59.39	no
125438	thermophilic	thermophileⓘ	no	95.00	yes
125438	flagellated	motile2+ⓘ	no	94.60	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Expanding the Bacterial Diversity of the Female Urinary Microbiome: Description of Eight New Corynebacterium Species.	Cappelli EA, Ksiezarek M, Wolf J, Neumann-Schaal M, Ribeiro TG, Peixe L.	Microorganisms	10.3390/microorganisms11020388	2023
Phylogeny	Description of Corynebacterium hiratae sp. nov. isolated from a human tissue bone a novel member of Corynebacterium Genus.	de Oliveira Sant'Anna L, Dos Santos LS, Olivella JGB, da Cruz Mota M, Ramos JN, Baio PVP, da Rocha DJPG, Vieira VV, Almuzara M, Vay C, Barberis C, Castro TLP, Seyffert N, Pacheco LGC, Mattos-Guaraldi AL.	Braz J Microbiol	10.1007/s42770-024-01331-z	2024
Phylogeny	Corynebacterium guaraldiae sp. nov.: a new species of Corynebacterium from human infections.	de Oliveira Sant'Anna L, Dos Santos LS, Araujo MRB, da Rocha DJPG, Ramos JN, Baio PVP, Del Peloso PF, da Costa Ferreira Leite C, Peixoto RS, Almuzara M, Vay C, Barberis C, Sangal V, Burkovski A, Aguiar ERGR, Mattos-Guaraldi AL, Pacheco LGC, Vieira VV.	Braz J Microbiol	10.1007/s42770-023-00938-y	2023
Genetics	Corynebacterium phoceense sp. nov., strain MC1^T a new bacterial species isolated from human urine.	Cresci M, Ibrahima Lo C, Khelaifia S, Mouelhi D, Delerce J, Di Pinto F, Michelle C, Fournier PE, Raoult D, Lagier JC, Moal V.	New Microbes New Infect	10.1016/j.nmni.2016.09.001	2016
Phylogeny	Corynebacterium aurimucosum sp. nov. and emended description of Corynebacterium minutissimum Collins and Jones (1983).	Yassin AF, Steiner U, Ludwig W	Int J Syst Evol Microbiol	10.1099/00207713-52-3-1001	2002

References

#11738	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44532
#20070	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#23188	A F Yassin, U Steiner, W Ludwig: Corynebacterium aurimucosum sp. nov. and emended description of Corynebacterium minutissimum Collins and Jones (1983). IJSEM 52: 1001 - 1005 2002 ( DOI 10.1099/00207713-52-3-1001 , PubMed 12054216 )
#26321	IJSEM 1531 2004 ( DOI 10.1099/ijs.0.02738-0 , PubMed 15388706 )
#29952	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26321
#40729	; Curators of the CIP;
#57696	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47449
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#68371	Automatically annotated from API 50CH acid .
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116637	Collection of Institut Pasteur ; Curators of the CIP; CIP 107897
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Corynebacterium aurimucosum (DSM 44532, CCUG 47449, CIP 107897)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API coryne

API zym

API 20NE

API 50CHac

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_030408555

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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