Corynebacterium appendicis DSM 44531 is a microaerophile, mesophilic, Gram-positive prokaryote that was isolated from abdominal swab of a patient with appendicitis.
Gram-positive pleomorphic-shaped microaerophile mesophilic genome sequence 16S sequence| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Mycobacteriales |
| Family Corynebacteriaceae |
| Genus Corynebacterium |
| Species Corynebacterium appendicis |
| Full scientific name Corynebacterium appendicis Yassin et al. 2002 |
| BacDive ID | Other strains from Corynebacterium appendicis (1) | Type strain |
|---|---|---|
| 156991 | C. appendicis CCUG 68259 |
| @ref | Type of hemolysis | Colony size | Colony color | Incubation period | Medium used | |
|---|---|---|---|---|---|---|
| 20069 | Beige (1001) | 10-14 days | ISP 2 | |||
| 20069 | Beige (1001) | 10-14 days | ISP 3 | |||
| 20069 | Beige (1001) | 10-14 days | ISP 4 | |||
| 20069 | Beige (1001) | 10-14 days | ISP 5 | |||
| 20069 | Beige (1001) | 10-14 days | ISP 6 | |||
| 20069 | Beige (1001) | 10-14 days | ISP 7 | |||
| 23187 | gamma | <0.5 mm | greyish | 2 days | Columbia blood agar supplemented with 5% sheep blood | |
| 116424 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 11737 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | Medium recipe at MediaDive | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water | ||
| 11737 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 20069 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 20069 | ISP 3 | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |||
| 20069 | ISP 4 | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |||
| 20069 | ISP 5 | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |||
| 20069 | ISP 6 | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 20069 | ISP 7 | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 23187 | Columbia blood agar supplemented with 5% sheep blood | ||||
| 40563 | MEDIUM 45 - for Columbia agar with sheep blood | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml) | |||
| 116424 | CIP Medium 45 | Medium recipe at CIP |
| 23187 | Spore formationno |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68369 | 17128 ChEBI | adipate | - | assimilation | from API 20NE |
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 23187 | 22605 ChEBI | arabinitol | - | builds acid from | |
| 20069 | 22599 ChEBI | arabinose | - | ||
| 23187 | 22599 ChEBI | arabinose | - | builds acid from | |
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68369 | 29016 ChEBI | arginine | - | hydrolysis | from API 20NE |
| 23187 | 17057 ChEBI | cellobiose | - | builds acid from | |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 20069 | 62968 ChEBI | cellulose | + | ||
| 116424 | 16947 ChEBI | citrate | - | carbon source | |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | - | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | - | builds acid from | from API 50CH acid |
| 68379 | 17634 ChEBI | D-glucose | - | fermentation | from API Coryne |
| 68371 | 17634 ChEBI | D-glucose | - | builds acid from | from API 50CH acid |
| 68369 | 17634 ChEBI | D-glucose | - | assimilation | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | - | fermentation | from API 20NE |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68379 | 16899 ChEBI | D-mannitol | - | fermentation | from API Coryne |
| 68371 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 50CH acid |
| 68369 | 16899 ChEBI | D-mannitol | - | assimilation | from API 20NE |
| 68369 | 16024 ChEBI | D-mannose | - | assimilation | from API 20NE |
| 68371 | 16024 ChEBI | D-mannose | - | builds acid from | from API 50CH acid |
| 68379 | 16988 ChEBI | D-ribose | - | fermentation | from API Coryne |
| 68371 | 16988 ChEBI | D-ribose | - | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68379 | 65327 ChEBI | D-xylose | - | fermentation | from API Coryne |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68369 | 27689 ChEBI | decanoate | - | assimilation | from API 20NE |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 23187 | 4853 ChEBI | esculin | - | hydrolysis | |
| 68379 | 4853 ChEBI | esculin | - | hydrolysis | from API Coryne |
| 116424 | 4853 ChEBI | esculin | - | hydrolysis | |
| 68371 | 4853 ChEBI | esculin | - | builds acid from | from API 50CH acid |
| 20069 | 28757 ChEBI | fructose | - | ||
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 23187 | 5291 ChEBI | gelatin | - | hydrolysis | |
| 68379 | 5291 ChEBI | gelatin | - | hydrolysis | from API Coryne |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 68369 | 24265 ChEBI | gluconate | - | assimilation | from API 20NE |
| 20069 | 17234 ChEBI | glucose | + | ||
| 23187 | 17234 ChEBI | glucose | + | builds acid from | |
| 68371 | 17754 ChEBI | glycerol | - | builds acid from | from API 50CH acid |
| 23187 | 28087 ChEBI | glycogen | - | builds acid from | |
| 68379 | 28087 ChEBI | glycogen | - | fermentation | from API Coryne |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 23187 | 606565 ChEBI | hippurate | - | hydrolysis | |
| 116424 | 606565 ChEBI | hippurate | - | hydrolysis | |
| 23187 | 15443 ChEBI | inulin | - | builds acid from | |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68369 | 30849 ChEBI | L-arabinose | - | assimilation | from API 20NE |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 23187 | 17716 ChEBI | lactose | - | builds acid from | |
| 68379 | 17716 ChEBI | lactose | - | fermentation | from API Coryne |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 68369 | 25115 ChEBI | malate | - | assimilation | from API 20NE |
| 23187 | 17306 ChEBI | maltose | + | builds acid from | |
| 68379 | 17306 ChEBI | maltose | - | fermentation | from API Coryne |
| 68371 | 17306 ChEBI | maltose | - | builds acid from | from API 50CH acid |
| 68369 | 17306 ChEBI | maltose | - | assimilation | from API 20NE |
| 20069 | 29864 ChEBI | mannitol | + | ||
| 23187 | 29864 ChEBI | mannitol | - | builds acid from | |
| 23187 | 6731 ChEBI | melezitose | - | builds acid from | |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 23187 | 28053 ChEBI | melibiose | - | builds acid from | |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 20069 | 17268 ChEBI | myo-inositol | + | ||
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | - | builds acid from | from API 50CH acid |
| 68369 | 59640 ChEBI | N-acetylglucosamine | - | assimilation | from API 20NE |
| 68379 | 17632 ChEBI | nitrate | - | reduction | from API Coryne |
| 116424 | 17632 ChEBI | nitrate | - | reduction | |
| 116424 | 17632 ChEBI | nitrate | - | respiration | |
| 68369 | 17632 ChEBI | nitrate | + | reduction | from API 20NE |
| 116424 | 16301 ChEBI | nitrite | - | reduction | |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 23187 | 27941 ChEBI | pullulan | - | builds acid from | |
| 116424 | 45285 ChEBI | pyrazinamide | + | hydrolysis | |
| 20069 | 16634 ChEBI | raffinose | - | ||
| 23187 | 16634 ChEBI | raffinose | - | builds acid from | |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 20069 | 26546 ChEBI | rhamnose | - | ||
| 23187 | 26546 ChEBI | rhamnose | - | builds acid from | |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 23187 | 33942 ChEBI | ribose | - | builds acid from | |
| 23187 | 17814 ChEBI | salicin | - | builds acid from | |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 23187 | 30911 ChEBI | sorbitol | - | builds acid from | |
| 23187 | 28017 ChEBI | starch | - | hydrolysis | |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 20069 | 17992 ChEBI | sucrose | - | ||
| 23187 | 17992 ChEBI | sucrose | - | builds acid from | |
| 68379 | 17992 ChEBI | sucrose | - | fermentation | from API Coryne |
| 68371 | 17992 ChEBI | sucrose | - | builds acid from | from API 50CH acid |
| 23187 | 33954 ChEBI | tagatose | - | builds acid from | |
| 23187 | 27082 ChEBI | trehalose | - | builds acid from | |
| 68371 | 27082 ChEBI | trehalose | - | builds acid from | from API 50CH acid |
| 23187 | 27897 ChEBI | tryptophan | - | energy source | |
| 68369 | 27897 ChEBI | tryptophan | - | energy source | from API 20NE |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68379 | 16199 ChEBI | urea | + | hydrolysis | from API Coryne |
| 68369 | 16199 ChEBI | urea | + | hydrolysis | from API 20NE |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| 20069 | 18222 ChEBI | xylose | - | ||
| 23187 | 18222 ChEBI | xylose | - | builds acid from |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 116424 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 23187 | acid phosphatase | - | 3.1.3.2 | |
| 68382 | acid phosphatase | - | 3.1.3.2 | from API zym |
| 116424 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 23187 | alkaline phosphatase | + | 3.1.3.1 | |
| 68379 | alkaline phosphatase | - | 3.1.3.1 | from API Coryne |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 23187 | alpha-fucosidase | - | 3.2.1.51 | |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 23187 | alpha-galactosidase | - | 3.2.1.22 | |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 23187 | alpha-glucosidase | - | 3.2.1.20 | |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68379 | alpha-glucosidase | - | 3.2.1.20 | from API Coryne |
| 23187 | alpha-mannosidase | - | 3.2.1.24 | |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 116424 | amylase | - | ||
| 23187 | arginine dihydrolase | - | 3.5.3.6 | |
| 68369 | arginine dihydrolase | - | 3.5.3.6 | from API 20NE |
| 23187 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 116424 | beta-galactosidase | - | 3.2.1.23 | |
| 68379 | beta-galactosidase | - | 3.2.1.23 | from API Coryne |
| 23187 | beta-glucosidase | - | 3.2.1.21 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68379 | beta-glucosidase | - | 3.2.1.21 | from API Coryne |
| 23187 | beta-glucuronidase | - | 3.2.1.31 | |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68379 | beta-glucuronidase | - | 3.2.1.31 | from API Coryne |
| 116424 | caseinase | - | 3.4.21.50 | |
| 23187 | catalase | + | 1.11.1.6 | |
| 116424 | catalase | + | 1.11.1.6 | |
| 23187 | chymotrypsin | - | 3.4.4.5 | |
| 23187 | cystine arylamidase | - | 3.4.11.3 | |
| 116424 | DNase | - | ||
| 23187 | esterase (C 4) | - | ||
| 23187 | esterase lipase (C 8) | - | ||
| 116424 | gamma-glutamyltransferase | + | 2.3.2.2 | |
| 116424 | gelatinase | - | ||
| 68379 | gelatinase | - | from API Coryne | |
| 23187 | glycyl tryptophan arylamidase | - | ||
| 116424 | lecithinase | - | ||
| 23187 | leucine arylamidase | - | 3.4.11.1 | |
| 116424 | lipase | - | ||
| 23187 | lipase (C 14) | - | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 116424 | lysine decarboxylase | - | 4.1.1.18 | |
| 23187 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API Coryne |
| 23187 | naphthol-AS-BI-phosphohydrolase | - | ||
| 23187 | nitrate reductase | - | 1.7.99.4 | |
| 116424 | ornithine decarboxylase | - | 4.1.1.17 | |
| 116424 | oxidase | - | ||
| 116424 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 23187 | pyrazinamidase | + | 3.5.1.B15 | |
| 68379 | pyrazinamidase | - | 3.5.1.B15 | from API Coryne |
| 23187 | pyroglutamic acid arylamidase | - | ||
| 23187 | pyrrolidonyl arylamidase | - | 3.4.19.3 | |
| 68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API Coryne |
| 23187 | trypsin | - | 3.4.21.4 | |
| 23187 | tryptophan deaminase | - | 4.1.99.1 | |
| 116424 | tryptophan deaminase | - | ||
| 116424 | tween esterase | - | ||
| 23187 | urease | + | 3.5.1.5 | |
| 116424 | urease | + | 3.5.1.5 | |
| 68379 | urease | + | 3.5.1.5 | from API Coryne |
| 68369 | urease | + | 3.5.1.5 | from API 20NE |
| 23187 | valine arylamidase | - | ||
| 68382 | valine arylamidase | - | from API zym |
| @ref | Control | Alkaline phosphatase | Esterase (C 4) | 2-naphtyl caprylateEsterase Lipase (C 8) | Lipase (C 14) | L-leucyl-2-naphthylamideLeucine arylamidase | L-valyl-2-naphthylamideValine arylamidase | L-cystyl-2-naphthylamideCystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20069 | not determinedn.d. | - | + | + | - | + | - | + | + | - | - | - | - | - | - | - | - | - | - | - | |
| 116424 | - | - | + | + | - | + | - | - | - | - | - | + | - | - | - | - | - | - | - | - | |
| 11737 | - | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116424 | not determinedn.d. | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | +/- |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Infection | #Patient | #Swab | |
| #Host Body-Site | #Gastrointestinal tract | #Large intestine | |
| #Host Body-Site | #Other | #Abdomen | |
| #Host Body-Site | #Other | #Abscess |
| @ref | Sample type | Geographic location | Country | Country ISO 3 Code | Continent | Isolation date | |
|---|---|---|---|---|---|---|---|
| 11737 | abdominal swab of a patient with appendicitis | Hamburg | Germany | DEU | Europe | ||
| 23187 | abdominal swab of a patient with appendicitis accompanied with abscess formation | ||||||
| 58075 | Human abdominal swab,appendicitis and abscess | Germany | DEU | Europe | |||
| 67770 | Abdominal swab of a patient with appendicitis with abscess formation | ||||||
| 116424 | Abdominal swab of a patient with appendicitis | Hamburg | Germany | DEU | Europe | 2001 |
Global distribution of 16S sequence AJ314919 (>99% sequence identity) for Corynebacterium appendicis from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 124043 | ASM3040841v1 assembly for Corynebacterium appendicis CIP 107643 | complete | 1161099 | 98.36 | ||||
| 67770 | IMG-taxon 2681813517 annotated assembly for Corynebacterium appendicis CIP 107643 DSM 44531 | contig | 1161099 | 71.95 | ||||
| 66792 | Corynebacterium appendicis CIP 107643 | complete | 1161099 | 40.96 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 11737 | Corynebacterium appendicis partial 16S rRNA gene, strain DSM 44531T | AJ314919 | 1470 | 1161099 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 76.10 | no |
| 125439 | motility | BacteriaNetⓘ | no | 84.40 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 95.50 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | microaerophile | 70.60 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 88.01 | yes |
| 125438 | anaerobic | anaerobicⓘ | no | 93.20 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 80.88 | no |
| 125438 | aerobic | aerobicⓘ | no | 53.88 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 93.50 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 92.50 | yes |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Phylogenomic Reappraisal of Fatty Acid Biosynthesis, Mycolic Acid Biosynthesis and Clinical Relevance Among Members of the Genus Corynebacterium. | Dover LG, Thompson AR, Sutcliffe IC, Sangal V. | Front Microbiol | 10.3389/fmicb.2021.802532 | 2021 | ||
| Phylogeny | Tumor tissue-specific bacterial biomarker panel for colorectal cancer: Bacteroides massiliensis, Alistipes species, Alistipes onderdonkii, Bifidobacterium pseudocatenulatum, Corynebacterium appendicis. | Hasan R, Bose S, Roy R, Paul D, Rawat S, Nilwe P, Chauhan NK, Choudhury S. | Arch Microbiol | 10.1007/s00203-022-02954-2 | 2022 | |
| Interplay between WNT/PI3K-mTOR axis and the microbiota in APC-driven colorectal carcinogenesis: data from a pilot study and possible implications for CRC prevention. | Di Paola FJ, Alquati C, Conti G, Calafato G, Turroni S, D'Amico F, Ceccarelli C, Buttitta F, Bernardi A, Cuicchi D, Poggioli G, Turchetti D, Ferrari S, Cannizzaro R, Realdon S, Brigidi P, Ricciardiello L. | J Transl Med | 10.1186/s12967-024-05305-5 | 2024 | ||
| The interplay between species and locations shapes vector fleas microbial communities in plague foci: pathogens rather than symbionts? | Seidi S, Raz A, Maleki-Ravasan N, Forouzan E, Karimian F, Sebbane F, Sohrabi A, Esmaeili S, Mostafavi E. | Front Cell Infect Microbiol | 2025 | |||
| Phylogeny | Association of gestational diabetes mellitus with changes in gut microbiota composition at the species level. | Chen F, Gan Y, Li Y, He W, Wu W, Wang K, Li Q. | BMC Microbiol | 10.1186/s12866-021-02207-0 | 2021 | |
| Phylogeny | Role of Williamsia and Segniliparus in human infections with the approach taxonomy, cultivation, and identification methods. | Fatahi-Bafghi M. | Ann Clin Microbiol Antimicrob | 10.1186/s12941-021-00416-z | 2021 | |
| The urinary microbiome associated with bladder cancer. | Bucevic Popovic V, Situm M, Chow CT, Chan LS, Roje B, Terzic J. | Sci Rep | 10.1038/s41598-018-29054-w | 2018 | ||
| Genetics | Genome-Based Taxonomic Classification of the Phylum Actinobacteria. | Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M. | Front Microbiol | 10.3389/fmicb.2018.02007 | 2018 | |
| Genetics | Expanding the Bacterial Diversity of the Female Urinary Microbiome: Description of Eight New Corynebacterium Species. | Cappelli EA, Ksiezarek M, Wolf J, Neumann-Schaal M, Ribeiro TG, Peixe L. | Microorganisms | 10.3390/microorganisms11020388 | 2023 | |
| Phylogeny | Isolation of Corynebacterium tuscaniae sp. nov. from blood cultures of a patient with endocarditis. | Riegel P, Creti R, Mattei R, Nieri A, von Hunolstein C. | J Clin Microbiol | 10.1128/jcm.44.2.307-312.2006 | 2006 | |
| Phylogeny | Corynebacterium godavarianum sp. nov., isolated from the Godavari river, India. | Jani K, Khare K, Senik S, Karodi P, Vemuluri VR, Bandal J, Shouche Y, Rale V, Sharma A | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002491 | 2017 | |
| Phylogeny | Corynebacterium appendicis sp. nov. | Yassin AF, Steiner U, Ludwig W | Int J Syst Evol Microbiol | 10.1099/00207713-52-4-1165 | 2002 |
| #11737 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44531 |
| #20069 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #23187 | A F Yassin, U Steiner, W Ludwig: Corynebacterium appendicis sp. nov.. IJSEM 52: 1165 - 1169 2002 ( DOI 10.1099/00207713-52-4-1165 , PubMed 12148623 ) |
| #40563 | ; Curators of the CIP; |
| #58075 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 48298 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68369 | Automatically annotated from API 20NE . |
| #68371 | Automatically annotated from API 50CH acid . |
| #68379 | Automatically annotated from API Coryne . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #116424 | Collection of Institut Pasteur ; Curators of the CIP; CIP 107643 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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BacDive in 2025: the core database for prokaryotic strain data