Corynebacterium freneyi (CCUG 45704, CIP 106767, JCM 45704)

Name: Corynebacterium freneyi (CCUG 45704, CIP 106767, JCM 45704)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3190

Type strain

Strain Designation 6695110

Culture col. no. CCUG 45704 CIP 106767 JCM 45704 DSM 44506 6695110 1 more

NCBI tax ID(s) 134034

Special Collections DSMZ CCUG JCM CIP Wink compendium Literature strains

History DSMZ <- F. Renaud, ISPB, Lyon; 6695110 CIP <- 2000, F. Renaud, ISPB, Lyon: strain 6695110 JCM <-- CCUG 45704 <-- P. Riegel ISPB 6695110. CIP <- 2000, F. Renaud, ISPB, Lyon: strain 6695110

Links

Corynebacterium freneyi 6695110 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from pus of a toe.

Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 50662

DSM 44506,CIP 106767,CCUG 45704,JCM 45704,JCM 12104

@ref 20215

Last LPSN update 2026-05-29 08:25:39

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium freneyi

Full scientific name Corynebacterium freneyi Renaud et al. 2001

BacDive ID	Other strains from **Corynebacterium freneyi** (11)	Type strain
3191	C. freneyi 20395347, DSM 44507, CIP 106768
135461	C. freneyi CIP 52.16
148438	C. freneyi CCUG 35447
152077	C. freneyi CCUG 45705
152504	C. freneyi CCUG 46961
154578	C. freneyi CCUG 54465
154579	C. freneyi CCUG 54466
154580	C. freneyi CCUG 54467
154581	C. freneyi CCUG 54468
154582	C. freneyi CCUG 54469
156719	C. freneyi CCUG 64424

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
23184	positive	rod-shaped
119452	positive	rod-shaped
125439			97.329
125439	positive		99.772
125438			92
125438	positive		91.121

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used	Hemolysis ability
20067		Sand yellow (1002)		10-14 days	ISP 2
20067		Sand yellow (1002)		10-14 days	ISP 3
20067		Sand yellow (1002)		10-14 days	ISP 4
20067		Sand yellow (1002)		10-14 days	ISP 5
20067		Sand yellow (1002)		10-14 days	ISP 6
20067		Sand yellow (1002)		10-14 days	ISP 7
23184	0.5-1.0 mm	white	irregular	2 days	blood-enriched medium
119452						0

Multicellular morphology

@ref	Forms multicellular complex	Medium name
20067		ISP 2
20067		ISP 3
20067		ISP 4
20067		ISP 5
20067		ISP 6
20067		ISP 7

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
11830	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
11830	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
20067	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
20067	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
20067	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
20067	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
20067	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
20067	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
23184	blood-enriched medium
38647	MEDIUM 45 - for Columbia agar with sheep blood		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml)
119452	CIP Medium 45	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
11830	positive	growth	37
20067	positive	optimum	37
23184	positive	growth	20
38647	positive	growth	37
56889	positive	growth	37
67770	positive	growth	37
119452	positive	growth	25-41
119452	negative	growth	10
119452	negative	growth	15
119452	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
56889	aerobe
119452	obligate aerobe
125439	obligate aerobe	98.911

Spore formation

@ref	Spore formation	Confidence
23184
125439		90.325

Halophily

@ref	Salt	Growth	Tested relation	Concentration
119452	NaCl	positive	growth	2-10 %
119452	NaCl		growth	0 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68379	17634 ChEBI	D-glucose	+	fermentation	from API Coryne
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
23184	4853 ChEBI	esculin	-	hydrolysis
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
119452	4853 ChEBI	esculin	-	hydrolysis
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
23184	5291 ChEBI	gelatin	-	hydrolysis
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
23184	17234 ChEBI	glucose	+	builds acid from
23184	17234 ChEBI	glucose	+	fermentation
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
23184	28087 ChEBI	glycogen	-	fermentation
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
119452	606565 ChEBI	hippurate	-	hydrolysis
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
23184	29991 ChEBI	L-aspartate	-	carbon source
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
23184	15971 ChEBI	L-histidine	-	carbon source
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
23184	17716 ChEBI	lactose	-	carbon source
23184	17716 ChEBI	lactose	-	fermentation
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
23184	17306 ChEBI	maltose	+	builds acid from
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
23184	29864 ChEBI	mannitol	-	fermentation
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
23184	17632 ChEBI	nitrate	+/-	reduction
68379	17632 ChEBI	nitrate	+	reduction	from API Coryne
119452	17632 ChEBI	nitrate	+	reduction
119452	17632 ChEBI	nitrate	-	respiration
119452	16301 ChEBI	nitrite	-	reduction
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
23184	33942 ChEBI	ribose	+	builds acid from
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
23184	30031 ChEBI	succinate	+	carbon source
23184	17992 ChEBI	sucrose	+	builds acid from
68379	17992 ChEBI	sucrose	+	fermentation	from API Coryne
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
23184	32528 ChEBI	turanose	+	carbon source
68371	32528 ChEBI	turanose	+	builds acid from	from API 50CH acid
23184	16199 ChEBI	urea	-	hydrolysis
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid
23184	18222 ChEBI	xylose	-	fermentation

Metabolite production

@ref	Chebi-ID	Metabolite	Production
119452	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
119452	15688 ChEBI	acetoin	+
119452	17234 ChEBI	glucose		+

Enzymes

@ref	Value	Activity	Ec
23184	6-phospho-beta-galactosidase	-	3.2.1.85
68382	acid phosphatase	+	3.1.3.2	from API zym
119452	alcohol dehydrogenase	-	1.1.1.1
23184	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
23184	alpha-glucosidase	+	3.2.1.20
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
119452	amylase	+
68382	beta-galactosidase	-	3.2.1.23	from API zym
119452	beta-galactosidase	-	3.2.1.23
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
23184	beta-glucuronidase	-	3.2.1.31
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
119452	caseinase	-	3.4.21.50
23184	catalase	+	1.11.1.6
119452	catalase	+	1.11.1.6
68379	catalase	+	1.11.1.6	from API Coryne
68382	cystine arylamidase	-	3.4.11.3	from API zym
119452	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
119452	gelatinase	-
68379	gelatinase	-		from API Coryne
119452	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
119452	lipase	+
68382	lipase (C 14)	-		from API zym
119452	lysine decarboxylase	-	4.1.1.18
23184	N-acetyl-beta-glucosaminidase	-	3.2.1.52
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119452	ornithine decarboxylase	-	4.1.1.17
119452	oxidase	-
119452	phenylalanine ammonia-lyase	-	4.3.1.24
23184	pyrazinamidase	+	3.5.1.B15
23184	pyrrolidonyl arylamidase	-	3.4.19.3
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
119452	tryptophan deaminase	-
119452	tween esterase	+
119452	urease	-	3.5.1.5
68379	urease	-	3.5.1.5	from API Coryne
68382	valine arylamidase	-		from API zym

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
20067	+	-	-	+	-	-	+	-	-	-	-	not determinedn.d.	+	-	-	-	-	-	+	-	not determinedn.d.
11830	+	+	-	+	-	-	+	-	-	-	-	-	+	+	-	-	+	-	+	-	+

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
20067	not determinedn.d.	+	+	+	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-
119452	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
119452	not determinedn.d.	-	-	-	-	+	-	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
119452	not determinedn.d.	+	-	-	+	-	-	-	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Limb	#Foot
#Host Body Product	#Fluids	-

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
11830	pus of a toe		Lyon	France	FRA	Europe
56889	Human wound,toe	Homo sapiens	Lyon,E.Herriot Hospital	France	FRA	Europe
67770	Pus from a toe		Lyon	France	FRA	Europe
119452	Human, Toe pus	Homo sapiens	Lyon	France	FRA	Europe	1988

Taxonmaps

69479

Global distribution of 16S sequence AJ292762 (>99% sequence identity) for Corynebacterium from Microbeatlas

Aquatic Samples	247
Soil Samples	269
Animal Samples	2814
Plant Samples	36
Total Samples	3366

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11830	2	Risk group (German classification) According to TRBA 466
20067	2	German classification According to TRBA 466
119452	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM1904780v1 assembly for Corynebacterium freneyi FDAARGOS 1426	complete	GCA_019047805	134034.5	8120416819	134034	97.69
124043	ASM3040883v1 assembly for Corynebacterium freneyi DSM 44506	complete	GCA_030408835	134034.17		134034	96.69
66792	ASM1787645v1 assembly for Corynebacterium freneyi DSM 44506	contig	GCA_017876455	134034.4	2918343737	134034	77.69

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Corynebacterium freneyi partial 16S rRNA gene, strain 20695110	AJ292762	1365		134034
20218	Corynebacterium freneyi 16S ribosomal RNA gene, partial sequence	AY438056	418		134034

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1904780v1 assembly for Corynebacterium freneyi FDAARGOS 1426
NCBI: GCA_019047805

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.91	no
125439	gram_stain	BacteriaNetⓘ	positive	99.77	no
125439	motility	BacteriaNetⓘ	no	97.33	no
125439	spore_formation	BacteriaNetⓘ	yes	90.33	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium freneyi strain FDAARGOS 1426 strain Not applicable
PATRIC: 134034.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.12	yes
125438	anaerobic	anaerobicⓘ	no	93.45	yes
125438	spore-forming	spore-formingⓘ	no	79.28	yes
125438	aerobic	aerobicⓘ	yes	74.12	yes
125438	thermophilic	thermophileⓘ	no	94.97	yes
125438	flagellated	motile2+ⓘ	no	92.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Preliminary In Vitro Evaluation of Silver, Copper and Gold Nanoparticles as New Antimicrobials for Pathogens That Induce Bovine Locomotion Disorders.	Kalinska A, Wawrylo C, Tlatlik W, Golebiewski M, Kot M, Lange A, Jaworski S.	Int J Mol Sci	10.3390/ijms25179494	2024
	A self-designed Chinese herbal formula alleviates GAstV infection-induced gout in goslings by inhibiting xanthine oxidase (XOD) and regulating intestinal microbiota.	Zhang X, Zhu M, Cui H, Fan J, Yang M, Jin Y, Mao S, Zhang H.	Poult Sci	10.1016/j.psj.2025.106062	2025
Phylogeny	Bacterial community analysis of treponeme-associated hoof disease in free-ranging elk (Cervus canadensis): evidence for a polybacterial etiology with geographic consistency.	Goldsmith EW, Taylor KR, Wild MA, Deb S, Sullivan T, Lofgren E, Garrison KR, Schroeder GM, Hilson C, Walrath NL, Burco JD, Lantz E, Winter SN, Shah DH.	Appl Environ Microbiol	10.1128/aem.00888-25	2025
Enzymology	Corynebacterium freneyi Bacterial Septicemia Secondary to Contagious Ecthyma in a Wild Muskox (Ovibos moschatus).	Rothenburger JL, Di Francesco J, Leclerc LM, van der Meer F, Tomaselli M, Zabek E, Kutz SJ.	J Wildl Dis	10.7589/2019-10-254	2021
	Isolation of Corynebacterium freneyi from a case of exudative pharyngitis, a close mimicker of Corynebacterium diphtheriae.	Kannambath R, Sistla S, Jayakar S, Pillai VM.	Access Microbiol	10.1099/acmi.0.000238	2021
	Corynebacterium freneyi as a cause of early prosthetic valve endocarditis.	Grenne B, Dalen H, Nordhaug DO, Sand-Aas T, Holte E, Damas JK, Mjolstad OC.	BMJ Case Rep	10.1136/bcr-2021-245152	2021
Phylogeny	Association of gestational diabetes mellitus with changes in gut microbiota composition at the species level.	Chen F, Gan Y, Li Y, He W, Wu W, Wang K, Li Q.	BMC Microbiol	10.1186/s12866-021-02207-0	2021
	Corynebacterium striatum Bacteremia Associated with a Catheter-Related Blood Stream Infection.	Daisuke U, Oishi T, Yamane K, Terada K.	Case Rep Infect Dis	10.1155/2017/2682149	2017
Phylogeny	Association of gut microbiota and SCFAs with finishing weight of Diannan small ear pigs.	Lan Q, Lian Y, Peng P, Yang L, Zhao H, Huang P, Ma H, Wei H, Yin Y, Liu M.	Front Microbiol	10.3389/fmicb.2023.1117965	2023
Enzymology	Challenges in microbiological identification of aerobic bacteria isolated from the skin of reptiles.	Brockmann M, Aupperle-Lellbach H, Gentil M, Heusinger A, Muller E, Marschang RE, Pees M.	PLoS One	10.1371/journal.pone.0240085	2020
Metabolism	A modified culture-based study of bacterial community composition in a tannery wastewater treatment plant.	Desta AF, Dalhammer G, Kittuva GR.	Water Sci Technol	10.2166/wst.2010.548	2010
Enzymology	Coryneform bacteria associated with canine otitis externa.	Aalbaek B, Bemis DA, Schjaerff M, Kania SA, Frank LA, Guardabassi L.	Vet Microbiol	10.1016/j.vetmic.2010.03.032	2010
	Effects of different duck rearing systems on egg flavor and quality and microbial diversity.	Shi X, Huang M, Song J, Zeng L, Liang Q, Qu Y, Li J, Xu G, Zheng J.	Poult Sci	10.1016/j.psj.2022.102110	2022
	Compendium of 5810 genomes of sheep and goat gut microbiomes provides new insights into the glycan and mucin utilization.	Zhang K, He C, Wang L, Suo L, Guo M, Guo J, Zhang T, Xu Y, Lei Y, Liu G, Qian Q, Mao Y, Kalds P, Wu Y, Cuoji A, Yang Y, Brugger D, Gan S, Wang M, Wang X, Zhao F, Chen Y.	Microbiome	10.1186/s40168-024-01806-z	2024
Phylogeny	Role of Williamsia and Segniliparus in human infections with the approach taxonomy, cultivation, and identification methods.	Fatahi-Bafghi M.	Ann Clin Microbiol Antimicrob	10.1186/s12941-021-00416-z	2021
	Disinfectant resistance of Salmonella in in vitro contaminated poultry house models and investigation of efficient disinfection methods using these models.	Ohashi I, Kobayashi S, Tamamura-Andoh Y, Arai N, Takamatsu D.	J Vet Med Sci	10.1292/jvms.22-0311	2022
Phylogeny	BruSIC: a novel selective medium for the primary isolation of Brucella in veterinary samples.	Mena-Bueno S, Poveda-Urkixo I, Asensio D, Echarte I, Zabalza-Barangua A, Grillo MJ.	Microbiol Spectr	10.1128/spectrum.01759-22	2022
Pathogenicity	Antimicrobial Treatment Options for Granulomatous Mastitis Caused by Corynebacterium Species.	Dobinson HC, Anderson TP, Chambers ST, Doogue MP, Seaward L, Werno AM.	J Clin Microbiol	10.1128/jcm.00760-15	2015
Genetics	An investigation of conventional microbial culture for the Naja atra bite wound, and the comparison between culture-based 16S Sanger sequencing and 16S metagenomics of the snake oropharyngeal bacterial microbiota.	Mao YC, Chuang HN, Shih CH, Hsieh HH, Jiang YH, Chiang LC, Lin WL, Hsiao TH, Liu PY.	PLoS Negl Trop Dis	10.1371/journal.pntd.0009331	2021
Phylogeny	Comprehensive study of Corynebacterium freneyi strains and extended and emended description of Corynebacterium freneyi Renaud, Aubel, Riegel, Meugnier, and Bollet 2001.	Funke G, Frodl R.	J Clin Microbiol	10.1128/jcm.01491-07	2008
Phylogeny	Corynebacterium freneyi bacteremia.	Auzias A, Bollet C, Ayari R, Drancourt M, Raoult D.	J Clin Microbiol	10.1128/jcm.41.6.2777-2778.2003	2003
	The bacterial and archaeal communities of flies, manure, lagoons, and troughs at a working dairy	Crippen T, Kim D, Poole T, Swiger S, Anderson R.	Front Microbiol		2023
Enzymology	Identification and molecular characterization of Corynebacterium xerosis isolated from a sheep cutaneous abscess: first case report in Mexico.	Hernandez-Leon F, Acosta-Dibarrat J, Vazquez-Chagoyan JC, Rosas PF, de Oca-Jimenez RM.	BMC Res Notes	10.1186/s13104-016-2170-8	2016
Phylogeny	Corynebacterium sputi sp. nov., isolated from the sputum of a patient with pneumonia.	Yassin AF, Siering C.	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/000414-0	2008
Phylogeny	Corynebacterium hansenii sp. nov., an alpha-glucosidase-negative bacterium related to Corynebacterium xerosis.	Renaud FNR, Coustumier AL, Wilhem N, Aubel D, Riegel P, Bollet C, Freney J.	Int J Syst Evol Microbiol	10.1099/ijs.0.64665-0	2007
Phylogeny	Corynebacterium sphenisci sp. nov., isolated from wild penguins.	Goyache J, Ballesteros C, Vela AI, Collins MD, Briones V, Hutson RA, Potti J, Garcia-Borboroglu P, Dominguez L, Fernandez-Garayzabal JF.	Int J Syst Evol Microbiol	10.1099/ijs.0.02502-0	2003
Phylogeny	Corynebacterium freneyi sp. nov., alpha-glucosidase-positive strains related to Corynebacterium xerosis.	Renaud FN, Aubel D, Riegel P, Meugnier H, Bollet C	Int J Syst Evol Microbiol	10.1099/00207713-51-5-1723	2001

References

#11830	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44506
#20067	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#23184	F N Renaud, D Aubel, P Riegel, H Meugnier, C Bollet: Corynebacterium freneyi sp. nov., alpha-glucosidase-positive strains related to Corynebacterium xerosis.. IJSEM 51: 1723 - 1728 2001 ( DOI 10.1099/00207713-51-5-1723 , PubMed 11594602 )
#38647	; Curators of the CIP;
#56889	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 45704
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119452	Collection of Institut Pasteur ; Curators of the CIP; CIP 106767
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Corynebacterium freneyi (CCUG 45704, CIP 106767, JCM 45704)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API coryne

API zym

API 50CHac

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_019047805

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media