Corynebacterium matruchotii (DSM 20635, ATCC 14266, DSM 43761)

Name: Corynebacterium matruchotii (DSM 20635, ATCC 14266, DSM 43761)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3102

Type strain

Strain Designation 47

Culture col. no. DSM 20635 ATCC 14266 DSM 43761 NCTC 10254 47 8 more

NCBI tax ID(s) 553207 43768

Special Collections DSMZ CCUG JCM CIP Wink compendium

Links

Corynebacterium matruchotii 47 is a facultative anaerobe, mesophilic, Gram-positive prokaryote that was isolated from oral calculus.

Gram-positive rod-shaped facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 14129

LMG 19647,ATCC 14266,CCUG 27545,DSM 20635,IFO 15360,IMET 11403,NCTC 10254,DSM 43761,JCM 9386,CCRC 14869,CIP 81.82,CCUG 46620,NBRC 15360,BCRC 14869

@ref 20215

Last LPSN update 2025-12-16 09:47:28

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium matruchotii

Full scientific name Corynebacterium matruchotii (Mendel 1919) Collins 1983

Synonyms (2)

"Cladothrix matruchoti"
Bacterionema matruchotii

BacDive ID	Other strains from **Corynebacterium matruchotii** (2)	Type strain
152592	C. matruchotii CCUG 47160, ATCC 33806
173164	C. matruchotii CIMB 04-3570, CRBIP17.61

Morphology

Cell morphology

@ref	Gram stain	Cell shape
120859	positive	rod-shaped
125439	positive
125439
125438

Colony morphology

@ref	Colony color	Incubation period	Medium used
18451	Sand yellow (1002)	10-14 days	ISP 2
18451	Sand yellow (1002)	10-14 days	ISP 3
18451	Beige (1001)	10-14 days	ISP 4
18451	Beige (1001)	10-14 days	ISP 5
18451	Beige (1001)	10-14 days	ISP 6
18451	Beige (1001)	10-14 days	ISP 7
120859

Multicellular morphology

@ref	Forms multicellular complex	Medium name
18451		ISP 2
18451		ISP 3
18451		ISP 4
18451		ISP 5
18451		ISP 6
18451		ISP 7

Culture and growth conditions

Culture medium

@ref	Name	Composition
18451	ISP 2	Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
18451	ISP 3	Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
18451	ISP 4	Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
18451	ISP 5	Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
18451	ISP 6	Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
18451	ISP 7	Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
8981	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
34649	MEDIUM 6 - Columbia agar with 10 % horse blood	Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
8981	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
120859	CIP Medium 6

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
8981	positive	growth	37	mesophilic
18451	positive	optimum	37	mesophilic
34649	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic
120859	positive	growth	25-41
120859	negative	growth	10
120859	negative	growth	15
120859	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
120859	facultative anaerobe
125439	facultative anaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
120859	NaCl	positive	growth	0-10 %

Murein

@ref	Murein short key	Type
8981	A31	A1gamma m-Dpm-direct

Observation

67770

Observationquinones: MK-8(H₂), MK-9(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
120859	16947 ChEBI	citrate	-	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
120859	4853 ChEBI	esculin	-	hydrolysis
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
120859	606565 ChEBI	hippurate	+	hydrolysis
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
68379	17632 ChEBI	nitrate	+	reduction	from API Coryne
120859	17632 ChEBI	nitrate	+	reduction
120859	17632 ChEBI	nitrate	+	respiration
120859	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
120859	45285 ChEBI	pyrazinamide	+	hydrolysis
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is antibiotic	Is sensitive	Is resistant
120859	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120859	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
120859	15688 ChEBI	acetoin	+
120859	17234 ChEBI	glucose

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
120859	alcohol dehydrogenase	+	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
120859	amylase	+
68382	beta-galactosidase	-	3.2.1.23	from API zym
120859	beta-galactosidase	-	3.2.1.23
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	+	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
120859	caseinase	-	3.4.21.50
120859	catalase	+	1.11.1.6
68379	catalase	+	1.11.1.6	from API Coryne
120859	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
120859	gamma-glutamyltransferase	-	2.3.2.2
120859	gelatinase	-
68379	gelatinase	-		from API Coryne
120859	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
120859	lipase	-
68382	lipase (C 14)	-		from API zym
120859	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
120859	ornithine decarboxylase	-	4.1.1.17
120859	oxidase	-
68379	pyrazinamidase	+	3.5.1.B15	from API Coryne
68382	trypsin	+	3.4.21.4	from API zym
120859	tryptophan deaminase	-
120859	tween esterase	-
120859	urease	-	3.5.1.5
68379	urease	-	3.5.1.5	from API Coryne

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	coenzyme A metabolism	100	4 of 4
66794	enterobactin biosynthesis	100	3 of 3
66794	vitamin K metabolism	100	5 of 5
66794	formaldehyde oxidation	100	3 of 3
66794	acetoin degradation	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	ppGpp biosynthesis	100	4 of 4
66794	starch degradation	90	9 of 10
66794	valine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	photosynthesis	85.71	12 of 14
66794	phenylalanine metabolism	84.62	11 of 13
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	pentose phosphate pathway	81.82	9 of 11
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	threonine metabolism	80	8 of 10
66794	heme metabolism	78.57	11 of 14
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	palmitate biosynthesis	77.27	17 of 22
66794	glycolysis	76.47	13 of 17
66794	vitamin B12 metabolism	76.47	26 of 34
66794	glycogen biosynthesis	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	citric acid cycle	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	propanol degradation	71.43	5 of 7
66794	propionate fermentation	70	7 of 10
66794	leucine metabolism	69.23	9 of 13
66794	vitamin B1 metabolism	69.23	9 of 13
66794	alanine metabolism	68.97	20 of 29
66794	glutamate and glutamine metabolism	67.86	19 of 28
66794	purine metabolism	67.02	63 of 94
66794	octane oxidation	66.67	2 of 3
66794	NAD metabolism	66.67	12 of 18
66794	cyanate degradation	66.67	2 of 3
66794	serine metabolism	66.67	6 of 9
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	histidine metabolism	65.52	19 of 29
66794	methionine metabolism	65.38	17 of 26
66794	tetrahydrofolate metabolism	64.29	9 of 14
66794	metabolism of disaccharids	63.64	7 of 11
66794	proline metabolism	63.64	7 of 11
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	isoleucine metabolism	62.5	5 of 8
66794	pyrimidine metabolism	62.22	28 of 45
66794	lipid metabolism	61.29	19 of 31
66794	flavin biosynthesis	60	9 of 15
66794	lipoate biosynthesis	60	3 of 5
66794	non-pathway related	57.89	22 of 38
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	cysteine metabolism	55.56	10 of 18
66794	d-mannose degradation	55.56	5 of 9
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	oxidative phosphorylation	52.75	48 of 91
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	tryptophan metabolism	50	19 of 38
66794	Entner Doudoroff pathway	50	5 of 10
66794	ethanol fermentation	50	1 of 2
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	biotin biosynthesis	50	2 of 4
66794	sulfopterin metabolism	50	2 of 4
66794	adipate degradation	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	arginine metabolism	50	12 of 24
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	ketogluconate metabolism	50	4 of 8
66794	lysine metabolism	47.62	20 of 42
66794	vitamin B6 metabolism	45.45	5 of 11
66794	lipid A biosynthesis	44.44	4 of 9
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	glycine metabolism	40	4 of 10
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	urea cycle	38.46	5 of 13
66794	sulfate reduction	38.46	5 of 13
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	tyrosine metabolism	35.71	5 of 14
66794	glutathione metabolism	35.71	5 of 14
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	pantothenate biosynthesis	33.33	2 of 6
66794	nitrate assimilation	33.33	3 of 9
66794	coenzyme M biosynthesis	30	3 of 10
66794	degradation of pentoses	28.57	8 of 28
66794	degradation of hexoses	27.78	5 of 18
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	cholesterol biosynthesis	27.27	3 of 11
66794	d-xylose degradation	27.27	3 of 11
66794	cyclohexanol degradation	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	degradation of sugar alcohols	25	4 of 16
66794	lactate fermentation	25	1 of 4
66794	4-hydroxymandelate degradation	22.22	2 of 9
66794	chlorophyll metabolism	22.22	4 of 18

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
18451	+	+	+	-	-	-	+	-	-	-	-	not determinedn.d.	+	+	-	-	-	-	+	-	not determinedn.d.
8981	+	+	-	-	-	-	-	-	-	-	-	-	+/-	+/-	-	-	+/-	-	+/-	-	+

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
18451	not determinedn.d.	-	+	+	-	+	+	+	+	+	+	-	-	-	-	+	+	-	-	-
120859	-	-	+	+	-	+	-	-	+	-	+	-	-	-	-	+	+	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
120859	not determinedn.d.	-	-	-	-	+	-	-	-	-	-	+	+	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	+/-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
120859	not determinedn.d.	+	+	-	+	+	-	+	+	+	+	+	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Oral cavity and airways	#Tooth

Isolation

@ref	Sample type
8981	oral calculus
67770	Oral calculus
120859	Oral calculus

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18451	2	German classification According to TRBA 466
8981	2	Risk group (German classification) According to TRBA 466
120859	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1161226v2 assembly for Corynebacterium matruchotii ATCC 14266	complete	GCA_011612265	43768.438	43768	92.64
67770	ASM17537v1 assembly for Corynebacterium matruchotii ATCC 14266	contig	GCA_000175375	553207.3	553207	76.7
67770	51470_A02 assembly for Corynebacterium matruchotii NCTC10254	contig	GCA_900447555	43768.6	43768	69.96

Genome browser: GCA_011612265

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	C.matruchotii 16S ribosomal DNA	X82065	1344		43768
20218	Corynebacterium matruchotii partial 16S rRNA gene, strain DSM 20635	X84443	1367		43768

GC content

@ref	GC-content (mol%)
8981	55
67770	56
67770	57.1

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Corynebacterium matruchotii ATCC 14266
NCBI: GCA_011612265

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	63.10	no
125439	motility	BacteriaNetⓘ	no	98.70	no
125439	gram_stain	BacteriaNetⓘ	positive	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	99.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium matruchotii ATCC 14266
NCBI: GCA_011612265.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.77	no
125438	anaerobic	anaerobicⓘ	no	91.68	yes
125438	aerobic	aerobicⓘ	no	54.04	yes
125438	spore-forming	spore-formingⓘ	no	73.74	no
125438	thermophilic	thermophileⓘ	no	91.42	yes
125438	flagellated	motile2+ⓘ	no	92.50	no

Literature

Title	Authors	Journal	DOI	Year
Extracellular Phosphate Modulation and Polyphosphate Accumulation by Corynebacterium matruchotii and Streptococcus mutans.	Ghose D, Jones RS.	Dent J (Basel)	10.3390/dj12110366	2024
Tip extension and simultaneous multiple fission in a filamentous bacterium.	Chimileski S, Borisy GG, Dewhirst FE, Mark Welch JL.	Proc Natl Acad Sci U S A	10.1073/pnas.2408654121	2024
Bacterial multispecies interaction mechanisms dictate biogeographic arrangement between the oral commensals Corynebacterium matruchotii and Streptococcus mitis.	Almeida E, Puri S, Labossiere A, Elangovan S, Kim J, Ramsey M.	mSystems	10.1128/msystems.00115-23	2023
Metatranscriptomic analysis shows functional alterations in subgingival biofilm in young smokers with periodontitis: a pilot study.	Casarin RCV, Silva RVCD, Paz HES, Stolf CS, Carvalho LM, Noronha MF, Sallum AW, Monteiro MF.	J Appl Oral Sci	10.1590/1678-7757-2024-0031	2024
Neisseria sicca and Corynebacterium matruchotii inhibited oral squamous cell carcinomas by regulating genome stability.	Shen X, Zhang B, Hu X, Li J, Wu M, Yan C, Yang Y, Li Y.	Bioengineered	10.1080/21655979.2022.2078556	2022
Structural Basis of a Thiol-Disulfide Oxidoreductase in the Hedgehog-Forming Actinobacterium Corynebacterium matruchotii.	Luong TT, Tirgar R, Reardon-Robinson ME, Joachimiak A, Osipiuk J, Ton-That H.	J Bacteriol	10.1128/jb.00783-17	2018
Metabolic Current Production by an Oral Biofilm Pathogen Corynebacterium matruchotii.	Naradasu D, Miran W, Okamoto A.	Molecules	10.3390/molecules25143141	2020
Corynebacterial membrane vesicles disrupt cariogenic interkingdom assemblages.	Treerat P, Rozendal T, de Mattos C, Davis A, Helliwell E, Merritt J, Kreth J.	Appl Environ Microbiol	10.1128/aem.00885-24	2024
Palaeoproteomic investigation of an ancient human skeleton with abnormal deposition of dental calculus.	Uchida-Fukuhara Y, Shimamura S, Sawafuji R, Nishiuchi T, Yoneda M, Ishida H, Matsumura H, Tsutaya T.	Sci Rep	10.1038/s41598-024-55779-y	2024
Cloning of NruI and Sbo13I restriction and modification sstems in E. coli and amino acid sequence comparison of M.NruI and M.Sbo13I with other amino-methyltransferases.	Zhu Z, Pedamallu CS, Fomenkov A, Benner J, Xu SY.	BMC Res Notes	10.1186/1756-0500-3-139	2010
Purification, developmental expression, and in silico characterization of alpha-amylase inhibitor from Echinochloa frumentacea.	Panwar P, Verma AK, Dubey A.	3 Biotech	10.1007/s13205-018-1260-9	2018
Metagenome sequencing-based strain-level and functional characterization of supragingival microbiome associated with dental caries in children.	Al-Hebshi NN, Baraniya D, Chen T, Hill J, Puri S, Puri S, Tellez M, Hasan NA, Colwell RR, Ismail A.	J Oral Microbiol	10.1080/20002297.2018.1557986	2019
Simulating transmission of ESKAPE pathogens plus C. difficile in relevant clinical scenarios.	Weber KL, LeSassier DS, Kappell AD, Schulte KQ, Westfall N, Albright NC, Godbold GD, Palsikar V, Acevedo CA, Ternus KL, Hewitt FC.	BMC Infect Dis	10.1186/s12879-020-05121-4	2020
Lifestyle, dietary factors, and antibody levels to oral bacteria in cancer-free participants of a European cohort study.	Michaud DS, Izard J, Rubin Z, Johansson I, Weiderpass E, Tjonneland A, Olsen A, Overvad K, Boutron-Ruault MC, Clavel-Chapelon F, Dossus L, Kaaks R, Katzke VA, Boeing H, Foerster J, Trichopoulou A, Naska A, Ziara G, Vineis P, Grioni S, Palli D, Tumino R, Mattiello A, Peeters PH, Siersema PD, Barricarte A, Huerta JM, Molina-Montes E, Dorronsoro M, Quiros JR, Duell EJ, Ohlsson B, Jeppsson B, Johansson A, Lif P, Khaw KT, Wareham N, Travis RC, Key TJ, Freisling H, Duarte-Salles T, Stepien M, Riboli E, Bueno-de-Mesquita HB.	Cancer Causes Control	10.1007/s10552-013-0265-2	2013
Two-component signal transduction in Corynebacterium glutamicum and other corynebacteria: on the way towards stimuli and targets.	Bott M, Brocker M.	Appl Microbiol Biotechnol	10.1007/s00253-012-4060-x	2012
Surfactants tailored by the class Actinobacteria.	Kugler JH, Le Roes-Hill M, Syldatk C, Hausmann R.	Front Microbiol	10.3389/fmicb.2015.00212	2015
Plasma antibodies to oral bacteria and risk of pancreatic cancer in a large European prospective cohort study.	Michaud DS, Izard J, Wilhelm-Benartzi CS, You DH, Grote VA, Tjonneland A, Dahm CC, Overvad K, Jenab M, Fedirko V, Boutron-Ruault MC, Clavel-Chapelon F, Racine A, Kaaks R, Boeing H, Foerster J, Trichopoulou A, Lagiou P, Trichopoulos D, Sacerdote C, Sieri S, Palli D, Tumino R, Panico S, Siersema PD, Peeters PH, Lund E, Barricarte A, Huerta JM, Molina-Montes E, Dorronsoro M, Quiros JR, Duell EJ, Ye W, Sund M, Lindkvist B, Johansen D, Khaw KT, Wareham N, Travis RC, Vineis P, Bueno-de-Mesquita HB, Riboli E.	Gut	10.1136/gutjnl-2012-303006	2013
Nutraceuticals in Periodontal Health: A Systematic Review on the Role of Vitamins in Periodontal Health Maintenance.	Varela-Lopez A, Navarro-Hortal MD, Giampieri F, Bullon P, Battino M, Quiles JL.	Molecules	10.3390/molecules23051226	2018
Community and gene composition of a human dental plaque microbiota obtained by metagenomic sequencing.	Xie G, Chain PS, Lo CC, Liu KL, Gans J, Merritt J, Qi F.	Mol Oral Microbiol	10.1111/j.2041-1014.2010.00587.x	2010
Cellular fatty acid composition as an adjunct to the identification of asporogenous, aerobic gram-positive rods.	Bernard KA, Bellefeuille M, Ewan EP.	J Clin Microbiol	10.1128/jcm.29.1.83-89.1991	1991
Transposome mutagenesis of an integral membrane transporter in Corynebacterium matruchotii.	Wang C, Hayes B, Vestling MM, Takayama K	Biochem Biophys Res Commun	10.1016/j.bbrc.2005.12.097	2005
Diversity within reference strains of Corynebacterium matruchotii includes Corynebacterium durum and a novel organism.	Barrett SL, Cookson BT, Carlson LC, Bernard KA, Coyle MB	J Clin Microbiol	10.1128/JCM.39.3.943-948.2001	2001
Isolation and characterization of a peptidase from an oral strain of Corynebacterium matruchotii.	Fujimura S, Nakamura T, Pulverer G	Zentralbl Bakteriol Mikrobiol Hyg A	10.1016/s0176-6724(86)80028-1	1986
Genome sequence and description of Corynebacterium ihumii sp. nov.	Padmanabhan R, Dubourg G, Lagier JC, Couderc C, Michelle C, Raoult D, Fournier PE.	Stand Genomic Sci	10.4056/sigs.5149006	2014

References

#8981	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20635
#18451	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#34649	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#120859	Collection of Institut Pasteur ; Curators of the CIP; CIP 81.82
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Corynebacterium matruchotii (DSM 20635, ATCC 14266, DSM 43761)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Murein

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API coryne

API zym

API 50CHac

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_011612265

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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