Adlercreutzia caecimuris (DSM 21839, CCUG 56815, B7)

Name: Adlercreutzia caecimuris (DSM 21839, CCUG 56815, B7)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3077

Type strain

Strain Designation B7

Culture col. no. DSM 21839 CCUG 56815 B7

NCBI tax ID(s) 671266

Special Collections DSMZ CCUG Mouse Literature strains

History DSMZ <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; B7 <- W. Duck and C. Elson, Univ. Alabama at Birmingham (UAB), USA

Links

Adlercreutzia caecimuris B7 is an anaerobe, Gram-positive, rod-shaped bacterium that was isolated from cecum of mouse model of spontaneous colitis .

Gram-positive rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 404406

DSM 21839,CCUG 56815

@ref 20215

Last LPSN update 2026-05-29 08:25:37

Domain Bacteria

Phylum Actinomycetota

Class Coriobacteriia

Order Eggerthellales

Family Eggerthellaceae

Genus Adlercreutzia

Species Adlercreutzia caecimuris

Full scientific name Adlercreutzia caecimuris (Clavel et al. 2010) Nouioui et al. 2018

Synonyms (1)

Enterorhabdus caecimuris

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
29529	positive	2 µm	0.5 µm	rod-shaped
125439	negative					90.857

Colony morphology

61098

Incubation period2-3 days

Pigmentation

29529

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
15982	WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)		Medium recipe at MediaDive	Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water
15982	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
15982	positive	growth	37
29529	positive	growth	27-40
29529	positive	optimum	37
61098	positive	growth	37

Culture pH

@ref	Ability	Type	PH
29529	positive	optimum	7.2
29529	positive	growth	7.2

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
15982	anaerobe
29529	anaerobe
61098	anaerobe
125439	obligate anaerobe	96.361

Spore formation

@ref	Spore formation	Confidence
29529
125439		99.817

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29529	NaCl	positive	growth	0-2 %
29529	NaCl	positive	optimum	0-2 %

Observation

29529

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	+	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
29529	28260 ChEBI	galactose	+	carbon source
29529	17234 ChEBI	glucose	+	carbon source
68380	29985 ChEBI	L-glutamate	+	degradation	from API rID32A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
29529	33942 ChEBI	ribose	+	carbon source
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
68380	alpha-glucosidase	-	3.2.1.20	from API rID32A
68380	arginine dihydrolase	+	3.5.3.6	from API rID32A
68380	beta-galactosidase	-	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68380	glutamate decarboxylase	+	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
15982	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Inflammation	-
#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body-Site	#Gastrointestinal tract	#Large intestine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
15982	cecum of mouse model of spontaneous colitis (C3H/HeJBir mouse)	Birmingham, Alabama	USA	USA	North America
61098	Mouse intestine	Alabama,Birmingham	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence DQ789120 (>99% sequence identity) for Adlercreutzia caecimuris subclade from Microbeatlas

Aquatic Samples	380
Soil Samples	213
Animal Samples	34868
Plant Samples	129
Total Samples	35590

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Ente_caec_B7_V1 assembly for Adlercreutzia caecimuris B7	scaffold	GCA_000403355	1235794.3	2563367219	1235794	74.85
66792	ASM2462327v1 assembly for Adlercreutzia caecimuris DSM 21839	contig	GCA_024623275	671266.11	8111524900	671266	72.17

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15982	Enterorhabdus caecimuris strain B7 16S ribosomal RNA gene, partial sequence	DQ789120	1474		1235794

GC content

@ref	GC-content (mol%)	Method
15982	64.5	high performance liquid chromatography (HPLC)
29529	64.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2462327v1 assembly for Adlercreutzia caecimuris DSM 21839
NCBI: GCA_024623275

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	96.36	no
125439	gram_stain	BacteriaNetⓘ	negative	90.86	no
125439	motility	BacteriaNetⓘ	yes	68.28	no
125439	spore_formation	BacteriaNetⓘ	no	99.82	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Adlercreutzia caecimuris B7 B7
NCBI: GCA_000403355.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	82.71	no
125438	anaerobic	anaerobicⓘ	yes	88.41	yes
125438	aerobic	aerobicⓘ	no	93.54	yes
125438	spore-forming	spore-formingⓘ	no	79.47	yes
125438	thermophilic	thermophileⓘ	no	88.19	yes
125438	flagellated	motile2+ⓘ	no	88.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	A Genomic Toolkit for the Mechanistic Dissection of Intractable Human Gut Bacteria.	Bisanz JE, Soto-Perez P, Noecker C, Aksenov AA, Lam KN, Kenney GE, Bess EN, Haiser HJ, Kyaw TS, Yu FB, Rekdal VM, Ha CWY, Devkota S, Balskus EP, Dorrestein PC, Allen-Vercoe E, Turnbaugh PJ.	Cell Host Microbe	10.1016/j.chom.2020.04.006	2020
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Phylogeny	Ellagibacter isourolithinifaciens gen. nov., sp. nov., a new member of the family Eggerthellaceae, isolated from human gut.	Beltran D, Romo-Vaquero M, Espin JC, Tomas-Barberan FA, Selma MV	Int J Syst Evol Microbiol	10.1099/ijsem.0.002735	2018
Phylogeny	Enterorhabdus caecimuris sp. nov., a member of the family Coriobacteriaceae isolated from a mouse model of spontaneous colitis, and emended description of the genus Enterorhabdus Clavel et al. 2009.	Clavel T, Duck W, Charrier C, Wenning M, Elson C, Haller D	Int J Syst Evol Microbiol	10.1099/ijs.0.015016-0	2009

References

#15982	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21839
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25926	IJSEM 1527 2010 ( DOI 10.1099/ijs.0.015016-0 , PubMed 19684311 )
#29529	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25926
#61098	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56815
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68380	Automatically annotated from API rID32A .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Adlercreutzia caecimuris (DSM 21839, CCUG 56815, B7)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000403355

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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