Name: Cryptobacterium curtum 12-3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3053

Type strain:

Species: Cryptobacterium curtum

Strain Designation: 12-3

Culture col. no.: DSM 15641, ATCC 700683, CCUG 55773

Strain history: <- J. Tang, ATCC <- Niigata Univ. <- E. Hoshino

NCBI tax ID(s): 469378 (strain), 84163 (species)

SI-ID 44077

ATCC 700683, CCUG43107, DSM 15641

Other strains from Cryptobacterium curtum

C. curtum CCUG 43106
C. curtum CCUG 45151 B

Section

Cryptobacterium curtum 12-3 is an anaerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from peridontal pocket of an adult with peridontal disease.

colony-forming
Gram-positive
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Coriobacteriia*
	Order	*Eggerthellales*
	Family	*Eggerthellaceae*
	Genus	*Cryptobacterium*
	Species	**Cryptobacterium curtum**
	Full Scientific Name (LPSN)	Cryptobacterium curtum Nakazawa et al. 1999

Information on morphological and physiological properties Morphology

[Ref.: #23098]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %99.639

[Ref.: #23098]	Cell length	0.8-1.0 µm

[Ref.: #23098]	Cell width	0.4 µm

[Ref.: #23098]	Cell shape	rod-shaped

[Ref.: #23098]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90.144

[Ref.: #23098]	Type of hemolysis	gamma
[Ref.: #23098]	Colony size	<1.0 mm
[Ref.: #23098]	Colony color	translucent
[Ref.: #23098]	Colony shape	circular
[Ref.: #23098]	Cultivation medium used	Brain Heart Infusion-blood agar plates

[Ref.: #60724]	Incubation period	3 days

Multimedia content

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Caption:

electron microscopic image

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

Brain Heart Infusion-blood agar plates

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #6011]			growth	37 °C
[Ref.: #60724]			growth	37 °C

[Ref.: #6011]	Temperature range	mesophilic
[Ref.: #60724]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6011]	Oxygen tolerance	anaerobe
[Ref.: #23098]	Oxygen tolerance	obligate anaerobe
[Ref.: #60724]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.441

[Ref.: #23098]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23098]	amygdalin ChEBI	-	assimilation
[Ref.: #23098]	arabinose ChEBI	-	assimilation
[Ref.: #23098]	cellobiose ChEBI	-	assimilation
[Ref.: #23098]	erythritol ChEBI	-	assimilation
[Ref.: #23098]	esculin ChEBI	-	assimilation
[Ref.: #23098]	esculin ChEBI	-	hydrolysis
[Ref.: #23098]	fructose ChEBI	-	assimilation
[Ref.: #23098]	galactose ChEBI	-	assimilation
[Ref.: #23098]	glucose ChEBI	-	assimilation
[Ref.: #23098]	glycogen ChEBI	-	assimilation
[Ref.: #23098]	lactose ChEBI	-	assimilation
[Ref.: #23098]	maltose ChEBI	-	assimilation
[Ref.: #23098]	mannitol ChEBI	-	assimilation
[Ref.: #23098]	mannose ChEBI	-	assimilation
[Ref.: #23098]	melezitose ChEBI	-	assimilation
[Ref.: #23098]	melibiose ChEBI	-	assimilation
[Ref.: #23098]	myo-inositol ChEBI	-	assimilation
[Ref.: #23098]	nitrate ChEBI	-	reduction
[Ref.: #23098]	rhamnose ChEBI	-	assimilation
[Ref.: #23098]	ribitol ChEBI	-	assimilation
[Ref.: #23098]	ribose ChEBI	-	assimilation
[Ref.: #23098]	salicin ChEBI	-	assimilation
[Ref.: #23098]	sorbitol ChEBI	-	assimilation
[Ref.: #23098]	starch ChEBI	-	assimilation
[Ref.: #23098]	starch ChEBI	-	hydrolysis
[Ref.: #23098]	sucrose ChEBI	-	assimilation
[Ref.: #23098]	trehalose ChEBI	-	assimilation
[Ref.: #23098]	xylose ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #23098]		indole ChEBI	no

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #23098]		catalase	-	1.11.1.6
[Ref.: #23098]		urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6011]	Sample type/isolated from	peridontal pocket of an adult with peridontal disease
[Ref.: #6011]	Country	Japan
[Ref.: #6011]	Country ISO 3 Code	JPN
[Ref.: #6011]	Continent	Asia

[Ref.: #23098]	Sample type/isolated from	human periodontal pocket sample (oral cavities)
[Ref.: #23098]	Enrichment culture	brain-heart infusion (BHI)-blood agar plates
[Ref.: #23098]	Enrichment culture duration	7-10 days

[Ref.: #60724]	Sample type/isolated from	Human periodontal pocket,adult,periodontal disease
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Infection	#Inflammation	-
#Host Body-Site	#Oral cavity and airways	#Periodontal pocket

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6011]	Cryptobacterium curtum gene for 16S rRNA, partial sequence	AB019260	1429	ENA	469378 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Cryptobacterium curtum DSM 15641	GCA_000023845	complete	GenBank	469378 tax ID	*
[Ref.: #66792]	Cryptobacterium curtum DSM 15641	469378.5	complete	PATRIC	469378 tax ID	*
[Ref.: #66792]	Cryptobacterium curtum 12-3, DSM 15641	644736346	complete	JGI IMG/M	469378 tax ID	*

[Ref.: #6011]	GC-content	50-51 mol%
[Ref.: #23098]	GC-content	51.0 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Cryptobacterium curtum DSM 15641 DSM 15641 NCBI: GCA_000023845.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cryptobacterium curtum DSM 15641 DSM 15641 NCBI: GCA_000023845.1
[Ref.: #69480]	motile	no	94.066	yes
[Ref.: #69480]	flagellated	no	98.269	no
[Ref.: #69480]	gram-positive	yes	90.995	yes
[Ref.: #69480]	anaerobic	yes	98.732	yes
[Ref.: #69480]	aerobic	no	97.717	yes
[Ref.: #69480]	halophile	no	82.468	no
[Ref.: #69480]	spore-forming	no	96.163	yes
[Ref.: #69480]	thermophile	no	92.883	no
[Ref.: #69480]	glucose-util	yes	57.278	yes
[Ref.: #69480]	glucose-ferment	no	53.826	no

Availability in culture collections External links

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Culture collection no.

DSM 15641, ATCC 700683, CCUG 55773

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SI-ID 44077

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete genome sequence of Cryptobacterium curtum type strain (12-3).	Mavrommatis K, Pukall R, Rohde C, Chen F, Sims D, Brettin T, Kuske C, Detter JC, Han C, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, Ovchinnikova G, Pati A, Ivanova N, Chen A, Palaniappan K, Chain P, D'haeseleer P, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Rohde M, Klenk HP, Kyrpides NC	Stand Genomic Sci	10.4056/sigs.12260	2009	*
Metabolism	Degradation of arginine by Slackia exigua ATCC 700122 and Cryptobacterium curtum ATCC 700683.	Uematsu H, Sato N, Djais A, Hoshino E	Oral Microbiol Immunol	10.1111/j.1399-302X.2006.00307.x	2006	*
Phylogeny	Cryptobacterium curtum gen. nov., sp. nov., a new genus of gram-positive anaerobic rod isolated from human oral cavities.	Nakazawa F, Poco SE, Ikeda T, Sato M, Kalfas S, Sundqvist G, Hoshino E	Int J Syst Bacteriol	10.1099/00207713-49-3-1193	1999	*

References

#6011

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15641

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23098

Futoshi Nakazawa,Sergio E. Poco,Tetsuro Ikeda,Michiko Sato,Sotos Kalfas,Göran Sundqvist,Etsuro Hoshino: Cryptobacterium curtum gen. nov., sp. nov., a new genus of Gram-positive anaerobic rod isolated from human oral cavities. IJSEM 49: 1193 - 1200 1999 ( DOI 10.1099/00207713-49-3-1193 , PubMed 10425779 )

#60724 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55773

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72573

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID44077.1 )

* These data were automatically processed and therefore are not curated

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Cryptobacterium curtum DSM 15641 DSM 15641

Cryptobacterium curtum DSM 15641 DSM 15641

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