Name: Limnohabitans australis MWH-BRAZ-DAM2D
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3033

Type strain:

Species: Limnohabitans australis

Strain Designation: MWH-BRAZ-DAM2D

Culture col. no.: CCUG 57769, DSM 21646, CCUG 56719, KCTC 42566

Strain history: <- M. W. Hahn, Austrian Academy of Sciences, Inst. Limnology; MWH-BRAZ-DAM2D

NCBI tax ID(s): 544681 (species)

SI-ID 405440

DSM 21646, CCUG 56719

Section

Limnohabitans australis MWH-BRAZ-DAM2D is an aerobe, chemoorganotroph, mesophilic bacterium that forms circular colonies and was isolated from subtropical freshwater pond.

colony-forming
rod-shaped
aerobe
chemoorganotroph
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Limnohabitans*
	Species	**Limnohabitans australis**
	Full Scientific Name (LPSN)	Limnohabitans australis Hahn et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #23096]	Cell length	1.0-1.7 µm

[Ref.: #23096]	Cell width	0.4-0.5 µm

[Ref.: #23096]	Cell shape	rod-shaped

[Ref.: #23096]	Motility	no

[Ref.: #23096]	Colony color	unpigmented
[Ref.: #23096]	Colony shape	circular
[Ref.: #23096]	Cultivation medium used	nutrient broth soytone yeast extract medium

[Ref.: #61067]	Incubation period	3-5 days

Information on culture and growth conditions Culture and growth conditions

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Culture medium

R2A MEDIUM (DSMZ Medium 830)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

Casitone agar (Difco BD)

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Culture medium growth

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Culture medium

Luria-Bertani agar (Difco BD)

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Culture medium growth

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Culture medium

nutrient broth soytone yeast extract medium

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Culture medium growth

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Culture medium

R2A agar (Remel)

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Culture medium growth

		Temperature
[Ref.: #15864]	growth	28 °C
[Ref.: #23096]	growth	12.0-36.0 °C
[Ref.: #61067]	growth	30 °C

[Ref.: #15864]	Temperature range	mesophilic
[Ref.: #61067]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23096]	Oxygen tolerance	aerobe
[Ref.: #23096]	Oxygen tolerance	facultative anaerobe
[Ref.: #61067]	Oxygen tolerance	aerobe

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Nutrition type

chemoorganotroph

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23096]		NaCl		growth	0.0-0.2	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23096]	2-oxoglutarate ChEBI	+	assimilation
[Ref.: #23096]	acetate ChEBI	+	assimilation
[Ref.: #23096]	citrate ChEBI	-	assimilation
[Ref.: #23096]	D-galactose ChEBI	-	assimilation
[Ref.: #23096]	D-mannose ChEBI	-	assimilation
[Ref.: #23096]	D-ribose ChEBI	-	assimilation
[Ref.: #23096]	ethanol ChEBI	-	assimilation
[Ref.: #23096]	fumarate ChEBI	+	assimilation
[Ref.: #23096]	gluconate ChEBI	+	assimilation
[Ref.: #23096]	glucose ChEBI	+	assimilation
[Ref.: #23096]	glycerate ChEBI	+	assimilation
[Ref.: #23096]	glycerol ChEBI	-	assimilation
[Ref.: #23096]	glycolate ChEBI	-	assimilation
[Ref.: #23096]	glyoxylate ChEBI	+	assimilation
[Ref.: #23096]	L-glutamate ChEBI	-	assimilation
[Ref.: #23096]	L-glutamine ChEBI	-	assimilation
[Ref.: #23096]	L-histidine ChEBI	-	assimilation
[Ref.: #23096]	L-phenylalanine ChEBI	-	assimilation
[Ref.: #23096]	L-proline ChEBI	-	assimilation
[Ref.: #23096]	L-serine ChEBI	-	assimilation
[Ref.: #23096]	L-tryptophan ChEBI	-	assimilation
[Ref.: #23096]	malate ChEBI	-	assimilation
[Ref.: #23096]	malonate ChEBI	+	assimilation
[Ref.: #23096]	oxaloacetate ChEBI	-	assimilation
[Ref.: #23096]	propionate ChEBI	-	assimilation
[Ref.: #23096]	pyruvate ChEBI	+	assimilation
[Ref.: #23096]	succinate ChEBI	+	assimilation
[Ref.: #23096]	sucrose ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #23096]		catalase	-	1.11.1.6
[Ref.: #23096]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15864]	Sample type/isolated from	subtropical freshwater pond
[Ref.: #15864]	Geographic location (country and/or sea, region)	Monjolinho pond, campus of the Federal Univ. São Carlos, 21° 59' 10.14'' S 47° 52' 50.28'' W
[Ref.: #15864]	Country	Brazil
[Ref.: #15864]	Country ISO 3 Code	BRA
[Ref.: #15864]	Continent	Middle and South America
[Ref.: #15864]	Geographic location	-21.9861°/-47.8806°

[Ref.: #61067]	Sample type/isolated from	Freshwater,pond
[Ref.: #61067]	Sampling date	2008-03-08
[Ref.: #61067]	Geographic location (country and/or sea, region)	Sao Carlos,Monjolinho Pond
[Ref.: #61067]	Country	Brazil
[Ref.: #61067]	Country ISO 3 Code	BRA
[Ref.: #61067]	Continent	Middle and South America

[Ref.: #23096]	Enrichment culture	nutrient broth soytone yeast extract medium
[Ref.: #23096]	Isolation/enrichment procedure	dilution-acclimatization method
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Pond (small)
#Climate	#Temperate	#Subtropical

What are isolation sources categories?

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Global distribution of 16S sequence FM178226 (>99% sequence identity) for Comamonadaceae from Microbeatlas

Aquatic Samples	1253
Soil Samples	44
Animal Samples	163
Plant Samples	393
Total Samples	1853

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15864]	Limnohabitans australis 16S rRNA gene (partial), tRNA-Ile, tRNA-Ala and 23S rRNA (partial) genes, type strain MWH-BRAZ-DAM2DT	FM178226	2194	ENA	544681 tax ID

[Ref.: #15864]	GC-content	55.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #23096]	GC-content	55.8 mol%

Availability in culture collections External links

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Culture collection no.

CCUG 57769, DSM 21646, CCUG 56719, KCTC 42566

[Ref.: #72553]

SI-ID 405440

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Limnohabitans radicicola sp. nov., a slow-growing bacterium isolated from rhizosphere of rice plant and emended description of the genus Limnohabitans.	Chhetri G, Kim J, Kim I, Kang M, Seo T	Int J Syst Evol Microbiol	10.1099/ijsem.0.004957	2021	*
Phylogeny	Limnohabitans australis sp. nov., isolated from a freshwater pond, and emended description of the genus Limnohabitans.	Hahn MW, Kasalicky V, Jezbera J, Brandt U, Simek K	Int J Syst Evol Microbiol	10.1099/ijs.0.022384-0	2010	*

References

#15864

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21646

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23096

Martin W. Hahn,Vojtech Kasalický,Jan Jezbera,Ulrike Brandt,Karel Siimek: Limnohabitans australis sp. nov., isolated from a freshwater pond, and emended description of the genus Limnohabitans. IJSEM 60: 2946 - 2950 2010 ( DOI 10.1099/ijs.0.022384-0 , PubMed 20118294 )

#61067 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56719

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#72553

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405440.1 )

* These data were automatically processed and therefore are not curated

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