Name: Limnohabitans curvus MWH-C5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3032

Type strain:

Species: Limnohabitans curvus

Strain Designation: MWH-C5

Culture col. no.: DSM 21645, CCUG 56720, KCTC 42562, CCUG 57770

Strain history: <- M. W. Hahn, Austrian Academy of Sciences, Inst. Limnology; MWH-C5

NCBI tax ID(s): 323423 (species)

SI-ID 406109

DSM 21645, CCUG 56720

Section

Limnohabitans curvus MWH-C5 is an aerobe, chemoorganotroph, mesophilic bacterium that forms circular colonies and was isolated from water of a deep, oligo-mesotrophic freshwater lake.

colony-forming
rod-shaped
aerobe
chemoorganotroph
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Limnohabitans*
	Species	**Limnohabitans curvus**
	Full Scientific Name (LPSN)	Limnohabitans curvus Hahn et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #23095]	Cell length	1.0-1.5 µm

[Ref.: #23095]	Cell width	0.4-0.5 µm

[Ref.: #23095]	Cell shape	rod-shaped

[Ref.: #23095]	Motility	no

[Ref.: #23095]	Colony color	unpigmented
[Ref.: #23095]	Colony shape	circular
[Ref.: #23095]	Cultivation medium used	nutrient broth soytone yeast extract medium

[Ref.: #61068]	Incubation period	3-5 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15863]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #15863]

Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

[Ref.: #23095]

Culture medium

nutrient broth soytone yeast extract medium

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Culture medium growth

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Culture medium

solidified complex media

[Ref.: #23095]

Culture medium growth

		Temperature
[Ref.: #15863]	growth	28 °C
[Ref.: #23095]	growth	4.0-34.0 °C
[Ref.: #61068]	growth	22 °C

[Ref.: #15863]	Temperature range	mesophilic
[Ref.: #23095]	Temperature range	mesophilic
[Ref.: #61068]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23095]	Oxygen tolerance	aerobe
[Ref.: #23095]	Oxygen tolerance	facultative anaerobe
[Ref.: #61068]	Oxygen tolerance	aerobe

[Ref.: #23095]

Nutrition type

chemoorganotroph

	Salt	Tested relation		Salt conc.
[Ref.: #23095]	NaCl		growth	0.0-0.5	%(w/v)
[Ref.: #23095]	NaCl		maximum	0.5	%
[Ref.: #23095]	NaCl	no	growth	>0.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23095]	2-oxoglutarate ChEBI	+	assimilation
[Ref.: #23095]	2-oxoglutarate ChEBI	+	carbon source
[Ref.: #23095]	acetate ChEBI	+	assimilation
[Ref.: #23095]	arginine ChEBI	-	assimilation
[Ref.: #23095]	betaine ChEBI	-	assimilation
[Ref.: #23095]	citrate ChEBI	+	assimilation
[Ref.: #23095]	citrate ChEBI	+	carbon source
[Ref.: #23095]	D-galactose ChEBI	+	assimilation
[Ref.: #23095]	D-gluconate ChEBI	+	carbon source
[Ref.: #23095]	D-glucose ChEBI	+	carbon source
[Ref.: #23095]	D-mannose ChEBI	+	carbon source
[Ref.: #23095]	D-ribose ChEBI	+	assimilation
[Ref.: #23095]	DL-carnitine ChEBI	-	assimilation
[Ref.: #23095]	ethanol ChEBI	+	assimilation
[Ref.: #23095]	fumarate ChEBI	+	assimilation
[Ref.: #23095]	gluconate ChEBI	+	assimilation
[Ref.: #23095]	glucose ChEBI	+	assimilation
[Ref.: #23095]	glutamine ChEBI	-	assimilation
[Ref.: #23095]	glutamine ChEBI	-	carbon source
[Ref.: #23095]	glycerate	+	assimilation
[Ref.: #23095]	glycerol ChEBI	-	assimilation
[Ref.: #23095]	glycerol ChEBI	-	carbon source
[Ref.: #23095]	glycolate ChEBI	-	assimilation
[Ref.: #23095]	glycolate ChEBI	-	carbon source
[Ref.: #23095]	glyoxylate ChEBI	-	assimilation
[Ref.: #23095]	histidine ChEBI	-	assimilation
[Ref.: #23095]	L-glutamate ChEBI	-	assimilation
[Ref.: #23095]	L-glutamate ChEBI	-	carbon source
[Ref.: #23095]	L-histidine ChEBI	-	carbon source
[Ref.: #23095]	L-phenylalanine ChEBI	-	carbon source
[Ref.: #23095]	L-proline ChEBI	-	carbon source
[Ref.: #23095]	L-serine ChEBI	-	carbon source
[Ref.: #23095]	L-tryptophan ChEBI	-	carbon source
[Ref.: #23095]	lactate ChEBI	-	assimilation
[Ref.: #23095]	lactate ChEBI	-	carbon source
[Ref.: #23095]	malate ChEBI	+	assimilation
[Ref.: #23095]	malate ChEBI	+	carbon source
[Ref.: #23095]	malonate ChEBI	-	assimilation
[Ref.: #23095]	malonate ChEBI	-	carbon source
[Ref.: #23095]	mannose ChEBI	+	assimilation
[Ref.: #23095]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #23095]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #23095]	oxalate ChEBI	-	assimilation
[Ref.: #23095]	oxaloacetate ChEBI	-	assimilation
[Ref.: #23095]	oxaloacetate ChEBI	-	carbon source
[Ref.: #23095]	phenylalanine ChEBI	-	assimilation
[Ref.: #23095]	proline ChEBI	-	assimilation
[Ref.: #23095]	propionate ChEBI	+	assimilation
[Ref.: #23095]	pyruvate ChEBI	+	assimilation
[Ref.: #23095]	pyruvate ChEBI	+	carbon source
[Ref.: #23095]	serine ChEBI	-	assimilation
[Ref.: #23095]	sorbose ChEBI	-	assimilation
[Ref.: #23095]	spermidine ChEBI	-	assimilation
[Ref.: #23095]	succinate ChEBI	+	assimilation
[Ref.: #23095]	sucrose ChEBI	+	assimilation
[Ref.: #23095]	tryptophan ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #23095]		catalase	+	1.11.1.6
[Ref.: #23095]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15863]	Sample type/isolated from	water of a deep, oligo-mesotrophic freshwater lake
[Ref.: #15863]	Geographic location (country and/or sea, region)	Lake Mondsee (47°50'2.92"N;13°22'25.98"E)
[Ref.: #15863]	Country	Austria
[Ref.: #15863]	Country ISO 3 Code	AUT
[Ref.: #15863]	Continent	Europe
[Ref.: #15863]	Geographic location	47.8341°/13.3739°

[Ref.: #23095]	Sample type/isolated from	water column of the oligomesotrophic Lake Mondsee
[Ref.: #23095]	Geographic location (country and/or sea, region)	Salzkammergut
[Ref.: #23095]	Enrichment culture	nutrient broth soytone yeast extract (NSY) medium
[Ref.: #23095]	Isolation/enrichment procedure	dilution-acclimatization method (DAM)

[Ref.: #61068]	Sample type/isolated from	Freshwater,lake
[Ref.: #61068]	Geographic location (country and/or sea, region)	Mondsee,Lake Mondsee
[Ref.: #61068]	Country	Austria
[Ref.: #61068]	Country ISO 3 Code	AUT
[Ref.: #61068]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ938026 (>99% sequence identity) for Comamonadaceae from Microbeatlas

Aquatic Samples	182
Soil Samples
Animal Samples	41
Plant Samples	3
Total Samples	226

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15863]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15863]	Limnohabitans curvus 16S rRNA (partial), tRNA-Ile, tRNA-Ala and 23S rRNA (partial) genes, strain MWH-C5	AJ938026	2196	ENA	323423 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Limnohabitans curvus MWH-C5	GCA_003063475	contig	GenBank	323423 tax ID	*
[Ref.: #66792]	Limnohabitans curvus strain MWH-C5	323423.8	wgs	PATRIC	323423 tax ID	*
[Ref.: #66792]	Limnohabitans curvus MWH-C5	2684622876	complete	JGI IMG/M	323423 tax ID	*

[Ref.: #15863]	GC-content	55.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #23095]	GC-content	55.5 mol%

Availability in culture collections External links

[Ref.: #15863]

Culture collection no.

DSM 21645, CCUG 56720, KCTC 42562, CCUG 57770

[Ref.: #72552]

SI-ID 406109

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Limnohabitans radicicola sp. nov., a slow-growing bacterium isolated from rhizosphere of rice plant and emended description of the genus Limnohabitans.	Chhetri G, Kim J, Kim I, Kang M, Seo T	Int J Syst Evol Microbiol	10.1099/ijsem.0.004957	2021	*
Phylogeny	Limnohabitans australis sp. nov., isolated from a freshwater pond, and emended description of the genus Limnohabitans.	Hahn MW, Kasalicky V, Jezbera J, Brandt U, Simek K	Int J Syst Evol Microbiol	10.1099/ijs.0.022384-0	2010	*
Phylogeny	Limnohabitans curvus gen. nov., sp. nov., a planktonic bacterium isolated from a freshwater lake.	Hahn MW, Kasalicky V, Jezbera J, Brandt U, Jezberova J, Simek K	Int J Syst Evol Microbiol	10.1099/ijs.0.013292-0	2009	*

References

#15863

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21645

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23095

Martin W. Hahn,Vojtech Kasalický,Jan Jezbera,Ulrike Brandt,Jitka Jezberová,Karel Simek: Limnohabitans curvus gen. nov., sp. nov., a planktonic bacterium isolated from a freshwater lake. IJSEM 60: 1358 - 1365 2010 ( DOI 10.1099/ijs.0.013292-0 , PubMed 19671731 )

#61068 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56720

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#72552

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406109.1 )

* These data were automatically processed and therefore are not curated

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