Roseateles asaccharophilus (DSM 25082, CCUG 53117, CECT 7319)

Name: Roseateles asaccharophilus (DSM 25082, CCUG 53117, CECT 7319)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3031

Type strain

Strain Designation KIN192

Culture col. no. DSM 25082 CCUG 53117 CECT 7319 KIN192

NCBI tax ID(s) 582607

Special Collections DSMZ CCUG Literature strains

History <- CECT <- J. Lalucat, Universitat de les Illes Balears, Microbiologia, Departament de Biologia, Palma de Mallorca, Spain <- CCUG <- J. Pinhassi, Dept. Pure and Applied Nat. Scs., Univ. Kalmar, Sweden

Links

Roseateles asaccharophilus KIN192 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from freshwater lake.

Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 369430

CCUG 53117,CECT 7319,DSM 25082

@ref 20215

Last LPSN update 2025-12-16 09:47:27

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Sphaerotilaceae

Genus Roseateles

Species Roseateles asaccharophilus

Full scientific name Roseateles asaccharophilus (Gomila et al. 2010) Liu et al. 2023

Synonyms (1)

Kinneretia asaccharophila

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell shape	Confidence
29355	negative	2 µm	rod-shaped
125439	negative			99.5
125438	negative			98.375

Colony morphology

59805

Incubation period1 day

Pigmentation

29355

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17840	REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)		Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
17840	positive	growth	28	mesophilic
29355	positive	growth	20-37
29355	positive	optimum	28.5	mesophilic
59805	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

59805

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.5
125438		91.321

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29355	NaCl	positive	optimum	0.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29355	62064 ChEBI	2,3-butanediol	+	carbon source
29355	28644 ChEBI	2-oxopentanoate	+	carbon source
29355	30089 ChEBI	acetate	+	carbon source
29355	17128 ChEBI	adipate	+	carbon source
29355	16449 ChEBI	alanine	+	carbon source
29355	40585 ChEBI	alpha-cyclodextrin	+	carbon source
29355	22653 ChEBI	asparagine	+	carbon source
29355	23652 ChEBI	dextrin	+	carbon source
29355	24265 ChEBI	gluconate	+	carbon source
29355	29987 ChEBI	glutamate	+	carbon source
29355	17596 ChEBI	inosine	+	carbon source
29355	21217 ChEBI	L-alaninamide	+	carbon source
29355	24996 ChEBI	lactate	+	carbon source
29355	51850 ChEBI	methyl pyruvate	+	carbon source
29355	17632 ChEBI	nitrate	+	reduction
29355	18401 ChEBI	phenylacetate	+	carbon source
29355	28044 ChEBI	phenylalanine	+	carbon source
29355	26271 ChEBI	proline	+	carbon source
29355	17822 ChEBI	serine	+	carbon source
29355	26986 ChEBI	threonine	+	carbon source
29355	17748 ChEBI	thymidine	+	carbon source
29355	53423 ChEBI	tween 40	+	carbon source
29355	53426 ChEBI	tween 80	+	carbon source
29355	16704 ChEBI	uridine	+	carbon source
29355	27248 ChEBI	urocanic acid	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29355	alkaline phosphatase	+	3.1.3.1
29355	cytochrome oxidase	+	1.9.3.1
29355	gelatinase	+

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	octane oxidation	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	biotin biosynthesis	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	formaldehyde oxidation	100	3 of 3
66794	adipate degradation	100	2 of 2
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	ubiquinone biosynthesis	100	7 of 7
66794	folate polyglutamylation	100	1 of 1
66794	methylglyoxal degradation	100	5 of 5
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	valine metabolism	100	9 of 9
66794	suberin monomers biosynthesis	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	NAD metabolism	94.44	17 of 18
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	proline metabolism	90.91	10 of 11
66794	threonine metabolism	90	9 of 10
66794	alanine metabolism	89.66	26 of 29
66794	lipid A biosynthesis	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	pyrimidine metabolism	86.67	39 of 45
66794	photosynthesis	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	phenylalanine metabolism	84.62	11 of 13
66794	vitamin B1 metabolism	84.62	11 of 13
66794	leucine metabolism	84.62	11 of 13
66794	purine metabolism	82.98	78 of 94
66794	pentose phosphate pathway	81.82	9 of 11
66794	starch degradation	80	8 of 10
66794	flavin biosynthesis	80	12 of 15
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	glycine betaine biosynthesis	80	4 of 5
66794	Entner Doudoroff pathway	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	heme metabolism	78.57	11 of 14
66794	citric acid cycle	78.57	11 of 14
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	serine metabolism	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	butanoate fermentation	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	histidine metabolism	72.41	21 of 29
66794	propanol degradation	71.43	5 of 7
66794	tyrosine metabolism	71.43	10 of 14
66794	lysine metabolism	71.43	30 of 42
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	tryptophan metabolism	68.42	26 of 38
66794	oxidative phosphorylation	68.13	62 of 91
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	acetoin degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	allantoin degradation	66.67	6 of 9
66794	glutathione metabolism	64.29	9 of 14
66794	vitamin B6 metabolism	63.64	7 of 11
66794	arginine metabolism	62.5	15 of 24
66794	ketogluconate metabolism	62.5	5 of 8
66794	sulfate reduction	61.54	8 of 13
66794	urea cycle	61.54	8 of 13
66794	cysteine metabolism	61.11	11 of 18
66794	non-pathway related	60.53	23 of 38
66794	cellulose degradation	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	lipid metabolism	58.06	18 of 31
66794	nitrate assimilation	55.56	5 of 9
66794	methionine metabolism	53.85	14 of 26
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	pantothenate biosynthesis	50	3 of 6
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	cyclohexanol degradation	50	2 of 4
66794	toluene degradation	50	2 of 4
66794	kanosamine biosynthesis II	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	degradation of sugar alcohols	50	8 of 16
66794	ethanol fermentation	50	1 of 2
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	3-phenylpropionate degradation	46.67	7 of 15
66794	d-xylose degradation	45.45	5 of 11
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	vitamin B12 metabolism	44.12	15 of 34
66794	vitamin K metabolism	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	phenol degradation	40	8 of 20
66794	arachidonate biosynthesis	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	glycine metabolism	40	4 of 10
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	cholesterol biosynthesis	36.36	4 of 11
66794	metabolism of disaccharids	36.36	4 of 11
66794	cyanate degradation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	methane metabolism	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	degradation of sugar acids	32	8 of 25
66794	ascorbate metabolism	31.82	7 of 22
66794	polyamine pathway	30.43	7 of 23
66794	degradation of pentoses	28.57	8 of 28
66794	arachidonic acid metabolism	27.78	5 of 18
66794	degradation of hexoses	27.78	5 of 18
66794	carotenoid biosynthesis	27.27	6 of 22
66794	carnitine metabolism	25	2 of 8
66794	alginate biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	bile acid biosynthesis, neutral pathway	23.53	4 of 17
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
17840	freshwater lake		Lake Kinneret	Israel	ISR	Asia
59805	Freshwater	2000-09-11	Lake Kinneret	Israel	ISR	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17840	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM436240v1 assembly for Roseateles asaccharophilus DSM 25082	scaffold	GCA_004362405	582607.3	2770939493	582607	73.25
124043	ASM3040911v1 assembly for Roseateles asaccharophilus CECT 7319	scaffold	GCA_030409115	582607.7	8098618143	582607	68.58

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17840	Kinneretia asaccharophila strain KIN192 16S ribosomal RNA gene, partial sequence	AY136099	1386		582607

GC content

17840

GC-content (mol%)69.3

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Kinneretia asaccharophila DSM 25082
NCBI: GCA_004362405

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.50	no
125439	motility	BacteriaNetⓘ	yes	85.80	no
125439	gram_stain	BacteriaNetⓘ	negative	99.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	83.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Kinneretia asaccharophila DSM 25082
NCBI: GCA_004362405.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.38	no
125438	anaerobic	anaerobicⓘ	no	96.66	yes
125438	aerobic	aerobicⓘ	yes	87.92	no
125438	spore-forming	spore-formingⓘ	no	91.32	no
125438	thermophilic	thermophileⓘ	no	97.67	no
125438	flagellated	motile2+ⓘ	yes	84.82	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aquincola rivuli sp. nov., isolated from a freshwater stream.	Sheu SY, Hsieh TY, Chen WM	Int J Syst Evol Microbiol	10.1099/ijsem.0.003429	2019
Phylogeny	Kinneretia asaccharophila gen. nov., sp. nov., isolated from a freshwater lake, a member of the Rubrivivax branch of the family Comamonadaceae.	Gomila M, Pinhassi J, Falsen E, Moore ERB, Lalucat J	Int J Syst Evol Microbiol	10.1099/ijs.0.011478-0	2009

References

#17840	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25082
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25767	IJSEM 809 2010 ( DOI 10.1099/ijs.0.011478-0 , PubMed 19661516 )
#29355	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25767
#59805	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53117
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Roseateles asaccharophilus (DSM 25082, CCUG 53117, CECT 7319)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004362405

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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