Pseudorhodoferax caeni (DSM 21598, LMG 24543, SB1)

Name: Pseudorhodoferax caeni (DSM 21598, LMG 24543, SB1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3029

Type strain

Strain Designation SB1

Culture col. no. DSM 21598 LMG 24543 SB1

NCBI tax ID(s) 255042

Special Collections DSMZ Literature strains

Links

Pseudorhodoferax caeni SB1 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from activated sludge.

Gram-negative motile rod-shaped aerobe mesophilic 16S sequence

Name and taxonomic classification

SI-ID 343385

LMG 24543,DSM 21598

@ref 20215

Last LPSN update 2025-12-16 09:47:27

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Comamonadaceae

Genus Pseudorhodoferax

Species Pseudorhodoferax caeni

Full scientific name Pseudorhodoferax caeni Bruland et al. 2009

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
29123	negative	2.4 µm	0.95 µm	rod-shaped

Pigmentation

29123

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
15836	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
15836	positive	growth	28	mesophilic
29123	positive	optimum	30	mesophilic

Physiology and metabolism

Oxygen tolerance

29123

Oxygen toleranceaerobe

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29123	30089 ChEBI	acetate	+	carbon source
29123	16947 ChEBI	citrate	+	carbon source
29123	28757 ChEBI	fructose	+	carbon source
29123	24265 ChEBI	gluconate	+	carbon source
29123	25115 ChEBI	malate	+	carbon source
29123	29864 ChEBI	mannitol	+	carbon source
29123	17272 ChEBI	propionate	+	carbon source
29123	30031 ChEBI	succinate	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29123	catalase	+	1.11.1.6
29123	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Activated sludge

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
15836	activated sludge	Bavaria, Grüneck	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence AJ606333 (>99% sequence identity) for Pseudorhodoferax from Microbeatlas

Aquatic Samples	299
Soil Samples	31
Animal Samples	56
Plant Samples	17
Total Samples	403

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15836	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15836	Pseudorhodoferax caeni partial 16S rRNA gene, type strain SB1T	AJ606333	1453		255042

GC content

@ref	GC-content (mol%)	Method
15836	70.1	high performance liquid chromatography (HPLC)
29123	70.1

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudorhodoferax soli gen. nov., sp. nov. and Pseudorhodoferax caeni sp. nov., two members of the class Betaproteobacteria belonging to the family Comamonadaceae.	Bruland N, Bathe S, Willems A, Steinbuchel A	Int J Syst Evol Microbiol	10.1099/ijs.0.006791-0	2009

References

#15836	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21598
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#29123	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25549 (see below)
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudorhodoferax caeni (DSM 21598, LMG 24543, SB1)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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