Name: Pseudorhodoferax caeni SB1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 3029

Type strain:

Species: Pseudorhodoferax caeni

Strain Designation: SB1

Culture col. no.: DSM 21598, LMG 24543

Strain history: <- N. Bruland, Univ. Münster, Inst. Mol. Microbiol. Biotechnol., Germany; SB1 <- S. Bathe

NCBI tax ID(s): 255042 (species)

SI-ID 343385

LMG 24543, DSM 21598

Special Collections

Section

Pseudorhodoferax caeni SB1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from activated sludge.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Pseudorhodoferax*
	Species	**Pseudorhodoferax caeni**
	Full Scientific Name (LPSN)	Pseudorhodoferax caeni Bruland et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29123]	Gram stain	negative

[Ref.: #29123]	Cell length	2.4 µm

[Ref.: #29123]	Cell width	0.95 µm

[Ref.: #29123]	Cell shape	rod-shaped

[Ref.: #29123]	Motility	yes

[Ref.: #29123]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15836]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #15836]

Culture medium growth

[Ref.: #15836]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15836]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #15836]			growth	28 °C
[Ref.: #29123]			optimum	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29123]

Oxygen tolerance

aerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29123]	acetate ChEBI	+	carbon source
[Ref.: #29123]	citrate ChEBI	+	carbon source
[Ref.: #29123]	fructose ChEBI	+	carbon source
[Ref.: #29123]	gluconate ChEBI	+	carbon source
[Ref.: #29123]	malate ChEBI	+	carbon source
[Ref.: #29123]	mannitol ChEBI	+	carbon source
[Ref.: #29123]	propionate ChEBI	+	carbon source
[Ref.: #29123]	succinate ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29123]		catalase	+	1.11.1.6
[Ref.: #29123]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15836]	Sample type/isolated from	activated sludge
[Ref.: #15836]	Geographic location (country and/or sea, region)	Bavaria, Grüneck
[Ref.: #15836]	Country	Germany
[Ref.: #15836]	Country ISO 3 Code	DEU
[Ref.: #15836]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered

#Waste

#Activated sludge

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ606333 (>99% sequence identity) for Pseudorhodoferax from Microbeatlas

Aquatic Samples	299
Soil Samples	31
Animal Samples	56
Plant Samples	17
Total Samples	403

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15836]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15836]	Pseudorhodoferax caeni partial 16S rRNA gene, type strain SB1T	AJ606333	1453	GenBank ENA	255042 tax ID

[Ref.: #15836]	GC-content	70.1 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29123]	GC-content	70.1 mol%

Availability in culture collections External links

[Ref.: #15836]

Culture collection no.

DSM 21598, LMG 24543

[Ref.: #72549]

SI-ID 343385

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudorhodoferax soli gen. nov., sp. nov. and Pseudorhodoferax caeni sp. nov., two members of the class Betaproteobacteria belonging to the family Comamonadaceae.	Bruland N, Bathe S, Willems A, Steinbuchel A	Int J Syst Evol Microbiol	10.1099/ijs.0.006791-0	2009	*

References

#15836

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21598

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29123

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25549 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#72549

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID343385.1 )

#25549

IJSEM 2702 2009 ( DOI 10.1099/ijs.0.006791-0 , PubMed 19625429 )

* These data were automatically processed and therefore are not curated

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