Name: Albidiferax ferrireducens T118
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 3028

Type strain:

Species: Albidiferax ferrireducens

Strain Designation: T118

Culture col. no.: DSM 15236, ATCC BAA-621

Strain history: <- D. R. Lovely; T118 <- UMass, Amherst Microbiology Dept. <- K. T. Finneran

NCBI tax ID(s): 192843 (species)

SI-ID 100908

ATCC BAA-621, DSM 15236

Special Collections

DSMZ

Section

Albidiferax ferrireducens T118 is a Gram-negative bacterium that was isolated from coastal aquifer sediment.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Albidiferax*
	Species	**Albidiferax ferrireducens**
	Full Scientific Name (LPSN)	Albidiferax ferrireducens corrig. (Finneran et al. 2003) Ramana and Sasikala 2009

	Synonym	Albidoferax ferrireducens
	Synonym	Rhodoferax ferrireducens

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5775]

Culture medium

BASAL MEDIUM (DSMZ Medium 1001)

[Ref.: #5775]

Culture medium growth

[Ref.: #5775]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5775]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5775]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5775]	Sample type/isolated from	coastal aquifer sediment
[Ref.: #5775]	Geographic location (country and/or sea, region)	VA, Oyster Bay
[Ref.: #5775]	Country	USA
[Ref.: #5775]	Country ISO 3 Code	USA
[Ref.: #5775]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF435948 (>99% sequence identity) for Rhodoferax ferrireducens subclade from Microbeatlas

Aquatic Samples	16
Soil Samples
Animal Samples	1
Plant Samples	1
Total Samples	18

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5775]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5775]	Rhodoferax ferrireducens 16S ribosomal RNA gene, partial sequence	AF435948	1470	GenBank ENA	338969 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhodoferax ferrireducens T118 DSM 15236	GCA_000013605	complete	GenBank ENA	338969 tax ID	*
[Ref.: #66792]	Rhodoferax ferrireducens T118 strain DSM 15236	338969.25	plasmid	PATRIC	338969 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rhodoferax ferrireducens T118 DSM 15236 NCBI: GCA_000013605.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhodoferax ferrireducens T118 DSM 15236 NCBI: GCA_000013605.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	83.152	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	68.107	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.634	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.956	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	85.894	no

Availability in culture collections External links

[Ref.: #5775]

Culture collection no.

DSM 15236, ATCC BAA-621

[Ref.: #72548]

SI-ID 100908

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhodoferax koreense sp. nov, an obligately aerobic bacterium within the family Comamonadaceae, and emended description of the genus Rhodoferax.	Farh ME, Kim YJ, Singh P, Jung SY, Kang JP, Yang DC	J Microbiol	10.1007/s12275-017-7033-z	2017	*
Phylogeny	Rhodoferax ferrireducens sp. nov., a psychrotolerant, facultatively anaerobic bacterium that oxidizes acetate with the reduction of Fe(III).	Finneran KT, Johnsen CV, Lovley DR	Int J Syst Evol Microbiol	10.1099/ijs.0.02298-0	2003	*

References

#5775

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15236

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72548

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100908.1 )

* These data were automatically processed and therefore are not curated

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Rhodoferax ferrireducens T118 DSM 15236

Rhodoferax ferrireducens T118 DSM 15236

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