Name: Variovorax paradoxus 351
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3008

Type strain:

Species: Variovorax paradoxus

Strain Designation: 351, B13-0-1 D, B13-0-1D

Culture col. no.: DSM 30034, ATCC 17713, DSM 66, IFO 15149, NBRC 15149, CCUG 1777, LMG 1797, JCM 20526, IAM 12373, IAM 13535, ICPB 3985, JCM 20895, CIP 103459, NCIMB 11964

Strain history: CIP <- 1991, CCUG <- ATCC <- R.Y. Stanier, Inst. Pasteur, Paris, France: strain 351, Alcaligenes paradoxus biotype I <- D.H. Davis: strain B13-0-1D

NCBI tax ID(s): 1321610 (strain), 34073 (species)

SI-ID 5036

LMG 1797, ATCC 17713, CCUG 1777, DSM 30034, DSM 66, IAM 12373, IAM 13535, CIP 103459, NCIB 11964, IFO 15149, NCIMB 11964, CCM 4467, VKM B-1329, KCTC 1007, NBRC 15149, BCRC 17070, CCRC 17070, KCTC 12459, KACC 10222, JCM 20526, JCM 20895

Other strains from Variovorax paradoxus

V. paradoxus 12-6-2, 350, DSM 645, ATCC 17712, ...
V. paradoxus 14-O-1, 353, CCUG 15917, DSM 646, ...
V. paradoxus 3-20-2, 360, DSM 647, ATCC 17722, ...
V. paradoxus 444, DSM 1070, ICPB 2921-444, CCUG ...
V. paradoxus DSM 1071, ICPB 2922-447, JCM 20899, ...
V. paradoxus DSM 1072, ICPB 2923-449
V. paradoxus JMP116, pJP1, DSM 4065
V. paradoxus R1L1, DSM 16541
V. paradoxus 180, P2-106-S (3), CCUG 1778, LMG ...
V. paradoxus B4, DSM 21786
V. paradoxus BF3, DSM 9258
V. paradoxus SF004496(FSU),
V. paradoxus CCUG 22893, ATCC 17719, LMG 3577, ...
V. paradoxus CCUG 52932
V. paradoxus CCUG 63252
V. paradoxus CCUG 64149
V. paradoxus CCUG 65978
V. paradoxus CCUG 66021
V. paradoxus JCM 20910, ATCC 17716, IAM 13550, ...
V. paradoxus JCM 20911, ATCC 17718, IAM 13551, ...
V. paradoxus IDSBO-4, DSM 113672

Section

Variovorax paradoxus 351 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Variovorax*
	Species	**Variovorax paradoxus**
	Full Scientific Name (LPSN)	Variovorax paradoxus (Davis 1969) Willems et al. 1991

Synonym

Alcaligenes paradoxus

Information on morphological and physiological properties Morphology

[Ref.: #121552]	Gram stain	negative

[Ref.: #121552]	Cell shape	rod-shaped

[Ref.: #121552]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #36606]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #36606]

Culture medium growth

[Ref.: #36606]

Culture medium composition

expand / minimize

[Ref.: #9096]

Culture medium

MINERAL MEDIUM FOR CHEMOLITHOTROPHIC GROWTH (H-3) (DSMZ Medium 81)

[Ref.: #9096]

Culture medium growth

[Ref.: #9096]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9096]

Culture medium composition

expand / minimize

[Ref.: #9096]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #9096]

Culture medium growth

[Ref.: #9096]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9096]

Culture medium composition

expand / minimize

[Ref.: #121552]

Culture medium

CIP Medium 72

[Ref.: #121552]

Culture medium growth

[Ref.: #121552]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #9096]		growth	30 °C
[Ref.: #36606]		growth	25 °C
[Ref.: #44417]		growth	30 °C
[Ref.: #67770]		growth	25 °C
[Ref.: #121552]		growth	15-37 °C
[Ref.: #121552]	no	growth	5 °C
[Ref.: #121552]	no	growth	41 °C
[Ref.: #121552]	no	growth	45 °C

[Ref.: #9096]	Temperature range	mesophilic
[Ref.: #36606]	Temperature range	mesophilic
[Ref.: #44417]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #121552]	Temperature range	psychrophilic
[Ref.: #121552]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #44417]	Oxygen tolerance	aerobe
[Ref.: #121552]	Oxygen tolerance	obligate aerobe

	Salt	Tested relation		Salt conc.
[Ref.: #121552]	NaCl		growth	0-2	%
[Ref.: #121552]	NaCl	no	growth	4	%
[Ref.: #121552]	NaCl	no	growth	6	%
[Ref.: #121552]	NaCl	no	growth	8	%
[Ref.: #121552]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE, API ID32E
[Ref.: #68374]	cellobiose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #121552]	citrate ChEBI	-	carbon source
[Ref.: #68374]	D-arabitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	D-galacturonic acid ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68374]	D-glucose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68374]	D-mannitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #121552]	esculin ChEBI	-	hydrolysis
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #121552]	hippurate ChEBI	-	hydrolysis
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68374]	L-arabinose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	L-arabitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	L-rhamnose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	lysine ChEBI	-	degradation	* from API ID32E
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #121552]	malonate ChEBI	+	assimilation
[Ref.: #68374]	malonate ChEBI	-	assimilation	* from API ID32E
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68374]	maltose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	myo-inositol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #121552]	nitrate ChEBI	-	builds gas from
[Ref.: #121552]	nitrate ChEBI	+	reduction
[Ref.: #121552]	nitrate ChEBI	-	respiration
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #121552]	nitrite ChEBI	-	builds gas from
[Ref.: #121552]	nitrite ChEBI	-	reduction
[Ref.: #68374]	ornithine ChEBI	-	degradation	* from API ID32E
[Ref.: #68374]	palatinose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	ribitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	sorbitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	sucrose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	trehalose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE, API ID32E
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE, API ID32E
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #121552]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #121552]		indole ChEBI	no
[Ref.: #68374]		indole ChEBI	no	* from API ID32E, API 20NE

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #121552]	acetoin ChEBI	-
[Ref.: #121552]	glucose ChEBI		-
[Ref.: #68374]	indole ChEBI			-	* from API ID32E, API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #121552]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym, API ID32E
[Ref.: #68374]	alpha-glucosidase	+	3.2.1.20	* from API ID32E
[Ref.: #68374]	alpha-maltosidase	-		* from API ID32E
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #121552]	amylase	-
[Ref.: #68374]	arginine dihydrolase	-	3.5.3.6	* from API ID32E, API 20NE
[Ref.: #121552]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API ID32E
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API ID32E, API 20NE
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API ID32E
[Ref.: #121552]	caseinase	-	3.4.21.50
[Ref.: #121552]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #121552]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #121552]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #121552]	gelatinase	-
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68374]	L-aspartate arylamidase	+	3.4.11.21	* from API ID32E
[Ref.: #121552]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #121552]	lipase	-
[Ref.: #68374]	lipase	-		* from API ID32E
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #121552]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68374]	lysine decarboxylase	-	4.1.1.18	* from API ID32E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API ID32E
[Ref.: #121552]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #68374]	ornithine decarboxylase	-	4.1.1.17	* from API ID32E
[Ref.: #121552]	oxidase	+
[Ref.: #121552]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #121552]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #121552]	tryptophan deaminase	-
[Ref.: #121552]	tween esterase	-
[Ref.: #121552]	urease	+	3.5.1.5
[Ref.: #68374]	urease	-	3.5.1.5	* from API ID32E, API 20NE
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #44417]	7329	+	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	+	+	-	-	+

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #121552]	422	not determinedn.d.	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	+	-	+	+	-	-	-	+	-	+	-	-	+	+	-	-	-	-	-	-	-	-	+	-	+	+	-	-	-	-	+	-	+	+	+	-	+	-	+	+	+	+	+	-	-	+	-	-	-	+	-	+	+	-	+	+	+	+	+	-	-	-	-	+	+	+	+	+	-	+	+	+	-	+	-

API® ID32E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Ornithine decarboxylaseODC	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Urease/urea hydrolysisURE	Acid from L-arabitolLARL	Acid from D-galacturonic acidGAT	Acid from 5-Ketogluconate5KG	LipaseLIP	Phenol red (Acidification)RP	beta-Glucosidasebeta GLU	Acid from D-mannitolMAN	Acid from maltoseMAL	Acid from D-adonitolADO	Acid from palatinosePLE	beta-Glucuronidasebeta GUR	MalonateMNT	Indole productionIND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta-Galactosidasebeta GAL	Acid from D-glucoseGLU	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	alpha-Glucosidasealpha GLU	alpha-Galactosidasealpha GAL	Acid from trehaloseTRE	Acid from L-rhamnoseRHA	Acid from inositolINO	Acid from cellobioseCEL	Acid from sorbitolSOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
[Ref.: #44417]	709	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #44417]	3683	-	+	+	+	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-
[Ref.: #121552]	7547	-	+	+	+	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	quinate degradation	100	2 of 2
[Ref.: #66794]	4-hydroxymandelate degradation	100	9 of 9
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	methanofuran biosynthesis	100	5 of 5
[Ref.: #66794]	Entner Doudoroff pathway	100	10 of 10
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	pentose phosphate pathway	100	11 of 11
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	gallate degradation	100	5 of 5
[Ref.: #66794]	photosynthesis	100	14 of 14
[Ref.: #66794]	ketogluconate metabolism	100	8 of 8
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	resorcinol degradation	100	2 of 2
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	butanoate fermentation	100	4 of 4
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	IAA biosynthesis	100	3 of 3
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	ceramide biosynthesis	100	1 of 1
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	reductive acetyl coenzyme A pathway	100	7 of 7
[Ref.: #66794]	cyanate degradation	100	3 of 3
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	lactate fermentation	100	4 of 4
[Ref.: #66794]	taurine degradation	100	1 of 1
[Ref.: #66794]	NAD metabolism	94.44	17 of 18
[Ref.: #66794]	citric acid cycle	92.86	13 of 14
[Ref.: #66794]	leucine metabolism	92.31	12 of 13
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	starch degradation	90	9 of 10
[Ref.: #66794]	phenol degradation	90	18 of 20
[Ref.: #66794]	glutamate and glutamine metabolism	89.29	25 of 28
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	3-phenylpropionate degradation	86.67	13 of 15
[Ref.: #66794]	purine metabolism	86.17	81 of 94
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	tetrahydrofolate metabolism	85.71	12 of 14
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	methionine metabolism	84.62	22 of 26
[Ref.: #66794]	tryptophan metabolism	84.21	32 of 38
[Ref.: #66794]	glycolate and glyoxylate degradation	83.33	5 of 6
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	83.33	10 of 12
[Ref.: #66794]	alanine metabolism	82.76	24 of 29
[Ref.: #66794]	glycolysis	82.35	14 of 17
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	lysine metabolism	80.95	34 of 42
[Ref.: #66794]	vitamin K metabolism	80	4 of 5
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	degradation of sugar acids	80	20 of 25
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	3-chlorocatechol degradation	80	4 of 5
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	4-hydroxyphenylacetate degradation	80	8 of 10
[Ref.: #66794]	lipid A biosynthesis	77.78	7 of 9
[Ref.: #66794]	urea cycle	76.92	10 of 13
[Ref.: #66794]	pyrimidine metabolism	75.56	34 of 45
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	toluene degradation	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	oxidative phosphorylation	73.63	67 of 91
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	vitamin B6 metabolism	72.73	8 of 11
[Ref.: #66794]	metabolism of disaccharids	72.73	8 of 11
[Ref.: #66794]	tyrosine metabolism	71.43	10 of 14
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	lipid metabolism	70.97	22 of 31
[Ref.: #66794]	arginine metabolism	70.83	17 of 24
[Ref.: #66794]	vitamin B1 metabolism	69.23	9 of 13
[Ref.: #66794]	sulfate reduction	69.23	9 of 13
[Ref.: #66794]	degradation of pentoses	67.86	19 of 28
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	degradation of hexoses	66.67	12 of 18
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	allantoin degradation	66.67	6 of 9
[Ref.: #66794]	cysteine metabolism	66.67	12 of 18
[Ref.: #66794]	sulfoquinovose degradation	66.67	2 of 3
[Ref.: #66794]	non-pathway related	65.79	25 of 38
[Ref.: #66794]	histidine metabolism	65.52	19 of 29
[Ref.: #66794]	glutathione metabolism	64.29	9 of 14
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	androgen and estrogen metabolism	62.5	10 of 16
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	hydrogen production	60	3 of 5
[Ref.: #66794]	myo-inositol biosynthesis	60	6 of 10
[Ref.: #66794]	glycine betaine biosynthesis	60	3 of 5
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	isoprenoid biosynthesis	57.69	15 of 26
[Ref.: #66794]	aspartate and asparagine metabolism	55.56	5 of 9
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	vitamin E metabolism	50	2 of 4
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	carnitine metabolism	50	4 of 8
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	47.06	8 of 17
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	46.15	6 of 13
[Ref.: #66794]	cholesterol biosynthesis	45.45	5 of 11
[Ref.: #66794]	ascorbate metabolism	45.45	10 of 22
[Ref.: #66794]	carotenoid biosynthesis	45.45	10 of 22
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	benzoyl-CoA degradation	42.86	3 of 7
[Ref.: #66794]	methanogenesis from CO2	41.67	5 of 12
[Ref.: #66794]	vitamin B12 metabolism	41.18	14 of 34
[Ref.: #66794]	factor 420 biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	creatinine degradation	40	2 of 5
[Ref.: #66794]	elloramycin biosynthesis	40	2 of 5
[Ref.: #66794]	polyamine pathway	39.13	9 of 23
[Ref.: #66794]	arachidonic acid metabolism	38.89	7 of 18
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	phenylpropanoid biosynthesis	30.77	4 of 13
[Ref.: #66794]	aclacinomycin biosynthesis	28.57	2 of 7
[Ref.: #66794]	chlorophyll metabolism	27.78	5 of 18
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	daunorubicin biosynthesis	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9096]	Sample type/isolated from	soil

[Ref.: #44417]	Sample type/isolated from	Soil in mineral medium with an atmosphere of H2...
[Ref.: #44417]	Country	USA
[Ref.: #44417]	Country ISO 3 Code	USA
[Ref.: #44417]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Soil

[Ref.: #121552]	Sample type/isolated from	Environment, Soil enriched with pantothenate
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence D88006 (>99% sequence identity) for Variovorax from Microbeatlas

Aquatic Samples	2157
Soil Samples	3106
Animal Samples	2122
Plant Samples	2332
Total Samples	9717

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9096]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121552]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Variovorax paradoxus gene for 16S rRNA, partial sequence, strain: DSM 30034	AB622219	1483	ENA	34073 tax ID	*
[Ref.: #20218]	Variovorax paradoxus DNA, 16S-23S rRNA gene internal transcribed spacer, strain: DSM 30034	AB622229	634	ENA	34073 tax ID	*
[Ref.: #20218]	Variovorax paradoxus 16S rRNA gene, strain DSM 66	AJ420329	1483	ENA	34073 tax ID	*
[Ref.: #20218]	Variovorax paradoxus gene for 16S ribosomal RNA	D30793	1457	ENA	34073 tax ID	*
[Ref.: #20218]	Variovorax paradoxus DNA for 16S ribosomal RNA	D88006	1467	ENA	34073 tax ID	*
[Ref.: #20218]	Variovorax paradoxus gene for 16S rRNA, partial sequence, strain: NBRC 15149	AB680784	1460	ENA	1321610 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Variovorax paradoxus NBRC 15149	GCA_001591365	contig	GenBank	1321610 tax ID
[Ref.: #66792]	Variovorax paradoxus NBRC 15149	1321610.3	wgs	PATRIC	1321610 tax ID	*
[Ref.: #66792]	Variovorax paradoxus NBRC 15149	2731957648	draft	JGI IMG/M	1321610 tax ID	*

[Ref.: #9096]	GC-content	67.0 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #9096]	GC-content	68.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Variovorax paradoxus NBRC 15149 PATRIC: 1321610.3
[Ref.: #69480]	motile	yes	84.767	no
[Ref.: #69480]	gram-positive	no	98.627	no
[Ref.: #69480]	anaerobic	no	98.094	yes
[Ref.: #69480]	halophile	no	95.905	no
[Ref.: #69480]	spore-forming	no	94.372	no
[Ref.: #69480]	glucose-util	yes	65.199	yes
[Ref.: #69480]	flagellated	no	53.019	no
[Ref.: #69480]	thermophile	no	98.76	no
[Ref.: #69480]	aerobic	yes	92.066	yes
[Ref.: #69480]	glucose-ferment	no	89.02	no

Availability in culture collections External links

[Ref.: #9096]

Culture collection no.

DSM 30034, ATCC 17713, DSM 66, IFO 15149, NBRC 15149, CCUG 1777, LMG 1797, JCM 20526, IAM 12373, IAM 13535, ICPB 3985, JCM 20895, CIP 103459, NCIMB 11964

[Ref.: #72530]

SI-ID 5036

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Variovorax gossypii sp. nov., isolated from Gossypium hirsutum.	Kampfer P, Busse HJ, McInroy JA, Glaeser SP	Int J Syst Evol Microbiol	10.1099/ijsem.0.000581	2015	*
Phylogeny	Variovorax guangxiensis sp. nov., an aerobic, 1-aminocyclopropane-1-carboxylate deaminase producing bacterium isolated from banana rhizosphere.	Gao JL, Yuan M, Wang XM, Qiu TL, Li JW, Liu HC, Li XA, Chen J, Sun JG	Antonie Van Leeuwenhoek	10.1007/s10482-014-0304-3	2014	*
Phylogeny	Variovorax defluvii sp. nov., isolated from sewage.	Jin L, Kim KK, Ahn CY, Oh HM	Int J Syst Evol Microbiol	10.1099/ijs.0.035295-0	2011	*
Enzymology	Gene cloning of alpha-methylserine aldolase from Variovorax paradoxus and purification and characterization of the recombinant enzyme.	Nozaki H, Kuroda S, Watanabe K, Yokozeki K	Biosci Biotechnol Biochem	10.1271/bbb.80274	2008	*
Phylogeny	Variovorax boronicumulans sp. nov., a boron-accumulating bacterium isolated from soil.	Miwa H, Ahmed I, Yoon J, Yokota A, Fujiwara T	Int J Syst Evol Microbiol	10.1099/ijs.0.65315-0	2008	*
Phylogeny	Variovorax soli sp. nov., isolated from greenhouse soil.	Kim BY, Weon HY, Yoo SH, Lee SY, Kwon SW, Go SJ, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.64390-0	2006	*
Phylogeny	Variovorax dokdonensis sp. nov., isolated from soil.	Yoon JH, Kang SJ, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.64070-0	2006	*
Phylogeny	Variovorax terrae sp. nov. Isolated from Soil with Potential Antioxidant Activity.	Woo CY, Kim J	J Microbiol Biotechnol	10.4014/jmb.2205.05018	2022	*

References

#9096

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30034

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#36606 ; Curators of the CIP;
#44417 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 1777

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#68374

Automatically annotated from API ID32E .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#72530

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID5036.1 )

#121552 Collection of Institut Pasteur ; Curators of the CIP; CIP 103459
* These data were automatically processed and therefore are not curated

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Variovorax paradoxus NBRC 15149

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