Name: Roseateles depolymerans 61A
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2992

Type strain:

Species: Roseateles depolymerans

Strain Designation: 61A

Culture col. no.: DSM 11813, CCUG 52219

Strain history: <- T. Suyama; 61A

NCBI tax ID(s): 76731 (species)

SI-ID 49185

DSM 11813, NCIMB 13588, CCUG 48747, CCUG 52219

Special Collections

Other strains from Roseateles depolymerans

Section

When using BacDive for research please cite our paper

Roseateles depolymerans 61A is an obligate aerobe, Gram-negative, motile bacterium that was isolated from fresh water.

Gram-negative
motile
rod-shaped
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Sphaerotilaceae*
	Genus	*Roseateles*
	Species	**Roseateles depolymerans**
	Full Scientific Name (LPSN)	Roseateles depolymerans Suyama et al. 1999

Information on morphological and physiological properties Morphology

[Ref.: #23092]	Gram stain	negative
[Ref.: #32233]	Gram stain	negative
[Ref.: #125439]	Gram stain	negative Confidence in %90.4
[Ref.: #125438]	Gram stain	negative Confidence in %99

[Ref.: #23092]	Cell length	2.0 µm
[Ref.: #32233]	Cell length	2 µm

[Ref.: #23092]	Cell width	0.5 µm
[Ref.: #32233]	Cell width	0.5 µm

[Ref.: #23092]	Cell shape	rod-shaped
[Ref.: #32233]	Cell shape	rod-shaped

[Ref.: #23092]	Motility	yes
[Ref.: #32233]	Motility	yes

[Ref.: #23092]	Flagellum arrangement	polar

[Ref.: #23092]	Colony color	pink
[Ref.: #23092]	Incubation period	3 days
[Ref.: #23092]	Cultivation medium used	PHC agar plate medium

[Ref.: #23092]	Pigment production	yes
[Ref.: #23092]	Pigment name	carotenoids
[Ref.: #23092]	Pigment production	yes
[Ref.: #23092]	Pigment name	Bacteriochlorophyll c
[Ref.: #32233]	Pigment production	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23092]

Culture medium

PHC agar plate medium

[Ref.: #23092]

Culture medium growth

[Ref.: #4500]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #4500]

Culture medium growth

[Ref.: #4500]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #4500]		growth	28 °C
[Ref.: #23092]	negative	growth	45.0 °C
[Ref.: #23092]		optimum	35.0 °C
[Ref.: #32233]		growth	20-30 °C
[Ref.: #59470]		growth	37 °C

	pH	Kind of pH		pH
[Ref.: #23092]			optimum	6.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23092]	Oxygen tolerance	obligate aerobe
[Ref.: #32233]	Oxygen tolerance	aerobe
[Ref.: #59470]	Oxygen tolerance	aerobe
[Ref.: #125438]	Oxygen tolerance	aerobe Confidence in %92.462
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %90.2

[Ref.: #125439]

Ability of spore formation

no Confidence in %93.5

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23092]	casamino acids	+	carbon source
[Ref.: #23092]	casamino acids	+	growth
[Ref.: #23092]	citrate ChEBI	+	carbon source
[Ref.: #23092]	citrate ChEBI	+	growth
[Ref.: #23092]	D-fructose ChEBI	+	carbon source
[Ref.: #23092]	D-fructose ChEBI	+	growth
[Ref.: #23092]	D-galactose ChEBI	+	carbon source
[Ref.: #23092]	D-galactose ChEBI	+	growth
[Ref.: #23092]	D-glucose ChEBI	+	carbon source
[Ref.: #23092]	D-glucose ChEBI	+	growth
[Ref.: #32233]	gluconate ChEBI	+	carbon source
[Ref.: #32233]	glucose ChEBI	+	carbon source
[Ref.: #23092]	L-malate ChEBI	+	carbon source
[Ref.: #23092]	L-malate ChEBI	+	growth
[Ref.: #23092]	lactate ChEBI	+	carbon source
[Ref.: #23092]	lactate ChEBI	+	growth
[Ref.: #32233]	malate ChEBI	+	carbon source
[Ref.: #32233]	maltose ChEBI	+	carbon source
[Ref.: #23092]	mannitol ChEBI	+	carbon source
[Ref.: #23092]	mannitol ChEBI	+	growth
[Ref.: #23092]	poly(caprolactone) ChEBI	+	degradation
[Ref.: #23092]	poly(hexamethylene carbonate)	+	degradation
[Ref.: #23092]	poly(tetramethylene carbonate)	+	degradation
[Ref.: #23092]	pyruvate ChEBI	+	carbon source
[Ref.: #23092]	pyruvate ChEBI	+	growth
[Ref.: #23092]	succinate ChEBI	+	carbon source
[Ref.: #23092]	succinate ChEBI	+	growth
[Ref.: #23092]	yeast extract	+	carbon source
[Ref.: #23092]	yeast extract	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #23092]		polyhydroxybutyrate ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #23092]	catalase	-	1.11.1.6
[Ref.: #23092]	cytochrome oxidase	+	1.9.3.1
[Ref.: #32233]	cytochrome oxidase	+	1.9.3.1
[Ref.: #23092]	gelatinase	+
[Ref.: #32233]	gelatinase	+

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	quinate degradation	100	2 of 2
[Ref.: #66794]	Entner Doudoroff pathway	100	10 of 10
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	cyanate degradation	100	3 of 3
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	taurine degradation	100	1 of 1
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	ubiquinone biosynthesis	100	7 of 7
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	NAD metabolism	94.44	17 of 18
[Ref.: #66794]	proline metabolism	90.91	10 of 11
[Ref.: #66794]	starch degradation	90	9 of 10
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	tetrahydrofolate metabolism	85.71	12 of 14
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	purine metabolism	82.98	78 of 94
[Ref.: #66794]	vitamin B12 metabolism	82.35	28 of 34
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	pyrimidine metabolism	80	36 of 45
[Ref.: #66794]	D-cycloserine biosynthesis	80	4 of 5
[Ref.: #66794]	glutathione metabolism	78.57	11 of 14
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	citric acid cycle	78.57	11 of 14
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	histidine metabolism	75.86	22 of 29
[Ref.: #66794]	lactate fermentation	75	3 of 4
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	glutamate and glutamine metabolism	75	21 of 28
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	vitamin B6 metabolism	72.73	8 of 11
[Ref.: #66794]	alanine metabolism	72.41	21 of 29
[Ref.: #66794]	chlorophyll metabolism	72.22	13 of 18
[Ref.: #66794]	tyrosine metabolism	71.43	10 of 14
[Ref.: #66794]	lysine metabolism	71.43	30 of 42
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	oxidative phosphorylation	69.23	63 of 91
[Ref.: #66794]	tryptophan metabolism	68.42	26 of 38
[Ref.: #66794]	lipid metabolism	67.74	21 of 31
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	allantoin degradation	66.67	6 of 9
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	isoprenoid biosynthesis	65.38	17 of 26
[Ref.: #66794]	metabolism of disaccharids	63.64	7 of 11
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	urea cycle	61.54	8 of 13
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	degradation of pentoses	60.71	17 of 28
[Ref.: #66794]	non-pathway related	60.53	23 of 38
[Ref.: #66794]	3-phenylpropionate degradation	60	9 of 15
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	arachidonate biosynthesis	60	3 of 5
[Ref.: #66794]	gallate degradation	60	3 of 5
[Ref.: #66794]	vitamin K metabolism	60	3 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	arginine metabolism	58.33	14 of 24
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	nitrate assimilation	55.56	5 of 9
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	pentose phosphate pathway	54.55	6 of 11
[Ref.: #66794]	d-xylose degradation	54.55	6 of 11
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	degradation of sugar acids	52	13 of 25
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	glycogen biosynthesis	50	2 of 4
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	phenol degradation	50	10 of 20
[Ref.: #66794]	ascorbate metabolism	45.45	10 of 22
[Ref.: #66794]	4-hydroxymandelate degradation	44.44	4 of 9
[Ref.: #66794]	degradation of hexoses	44.44	8 of 18
[Ref.: #66794]	benzoyl-CoA degradation	42.86	3 of 7
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
[Ref.: #66794]	O-antigen biosynthesis	40	2 of 5
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	ethylmalonyl-CoA pathway	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	arachidonic acid metabolism	38.89	7 of 18
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	38.46	5 of 13
[Ref.: #66794]	androgen and estrogen metabolism	37.5	6 of 16
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	methane metabolism	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	carotenoid biosynthesis	31.82	7 of 22
[Ref.: #66794]	polyamine pathway	30.43	7 of 23
[Ref.: #66794]	4-hydroxyphenylacetate degradation	30	3 of 10
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	phenylpropanoid biosynthesis	23.08	3 of 13
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4500]	Sample type/isolated from	fresh water
[Ref.: #4500]	Geographic location (country and/or sea, region)	Hanamuro river, Ibaraki prefecture
[Ref.: #4500]	Country	Japan
[Ref.: #4500]	Country ISO 3 Code	JPN
[Ref.: #4500]	Continent	Asia

[Ref.: #23092]	Sample type/isolated from	river
[Ref.: #23092]	Enrichment culture composition	containing emulsified poly(hexamethylene carbonate)

[Ref.: #59470]	Sample type/isolated from	Fresh water
[Ref.: #59470]	Geographic location (country and/or sea, region)	Hanamuro river
[Ref.: #59470]	Country	Japan
[Ref.: #59470]	Country ISO 3 Code	JPN
[Ref.: #59470]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#River (Creek)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM501443 (>99% sequence identity) for Roseateles from Microbeatlas

Aquatic Samples	489
Soil Samples	360
Animal Samples	216
Plant Samples	315
Total Samples	1380

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4500]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32233]	Roseateles depolymerans partial 16S rRNA gene, type strain CCUG 52219T	AM501443	1396	GenBank ENA	76731 tax ID
[Ref.: #4500]	Roseateles depolymerans strain 61A (DSM11813) gene for 16S rRNA, clone:group1	AB003623	1452	GenBank ENA	76731 tax ID
[Ref.: #124043]	Roseateles depolymerans strain CCUG 52219 16S ribosomal RNA gene, partial sequence.	OQ629324	385	GenBank ENA	76731 tax ID	*
[Ref.: #20218]	Roseateles depolymerans strain 61A (DSM11813) gene for 16S rRNA, clone:group2	AB003624	1452	GenBank ENA	76731 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Roseateles depolymerans DSM 11813	GCA_003387155	scaffold	GenBank ENA	76731 tax ID	*
[Ref.: #66792]	Roseateles depolymerans strain DSM 11813	76731.7	wgs	PATRIC	76731 tax ID	*
[Ref.: #66792]	Roseateles depolymerans DSM 11813	2770939641	draft	JGI IMG/M	76731 tax ID	*

[Ref.: #23092]

GC-content

66.2-66.3 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Roseateles depolymerans DSM 11813 NCBI: GCA_003387155.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	99	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	97.011	yes
[Ref.: #125438]	aerobic	aerobicⓘ	yes	92.462	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	85.449	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	99.436	no
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	85.061	yes

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Roseateles depolymerans DSM 11813 NCBI: GCA_003387155
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	93.5
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	75.4
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	90.4
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	90.2

Availability in culture collections External links

[Ref.: #4500]

Culture collection no.

DSM 11813, CCUG 52219

[Ref.: #72514]

SI-ID 49185

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete genome of biodegradable plastics-decomposing Roseateles depolymerans KCTC 42856(T) (=61A(T)).	Lee SH, Choe H, Kim SG, Park DS, Nasir A, Kim BK, Kim KM	J Biotechnol	10.1016/j.jbiotec.2016.01.012	2016	*
Phylogeny	Description of Pelomonas aquatica sp. nov. and Pelomonas puraquae sp. nov., isolated from industrial and haemodialysis water.	Gomila M, Bowien B, Falsen E, Moore ERB, Lalucat J	Int J Syst Evol Microbiol	10.1099/ijs.0.65149-0	2007	*
Phylogeny	Roseateles depolymerans gen. nov., sp. nov., a new bacteriochlorophyll a-containing obligate aerobe belonging to the beta-subclass of the Proteobacteria.	Suyama T, Shigematsu T, Takaichi S, Nodasaka Y, Fujikawa S, Hosoya H, Tokiwa Y, Kanagawa T, Hanada S	Int J Syst Bacteriol	10.1099/00207713-49-2-449	1999	*

References

#4500

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11813

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23092

Tetsushi Suyama,Toru Shigematsu,Shinichi Takaichi,Yoshinobu Nodasaka,Seizo Fujikawa,Hiroyuki Hosoya,Yutaka Tokiwa,Takahiro Kanagawa,Satoshi Hanada: Roseateles depolymerans gen. nov., sp. nov., a new bacteriochlorophyll a-containing obligate aerobe belonging to the beta-subclass of the Proteobacteria. IJSEM 49: 449 - 457 1999 ( DOI 10.1099/00207713-49-2-449 , PubMed 10319464 )

#32233

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28475 (see below)

#59470 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 52219

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#72514

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49185.1 )

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

#28475

IJSEM 6 2008 ( DOI 10.1099/ijs.0.65169-0 , PubMed 18175673 )

* These data were automatically processed and therefore are not curated

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Roseateles depolymerans DSM 11813

Roseateles depolymerans DSM 11813

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