Polaromonas jejuensis (DSM 19351, KACC 12508, JS12-13)

Name: Polaromonas jejuensis (DSM 19351, KACC 12508, JS12-13)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2984

Type strain

Strain Designation JS12-13

Culture col. no. DSM 19351 KACC 12508 JS12-13

NCBI tax ID(s) 457502

Special Collections DSMZ Literature strains

History <- S.-W. Kwon, KACC; JS12-13 <- H.-Y. Weon, Natl. Inst. Agricult. Sci. and Technol., Suwon, Korea

Links

Polaromonas jejuensis JS12-13 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from soil.

Gram-negative rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 402758

NBRC 106434,DSM 19351

@ref 20215

Last LPSN update 2026-02-09 11:18:24

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Comamonadaceae

Genus Polaromonas

Species Polaromonas jejuensis

Full scientific name Polaromonas jejuensis Weon et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
23090	negative	1.0-3.0 µm	0.6 µm	rod-shaped

Colony morphology

@ref	Colony color	Colony shape	Medium used
23090	pale yellow	circular	R2A agar

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
8066	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
23090	nutrient agar (Difco)
23090	Reasoner's 2A agar (R2A)

Culture temp

@ref	Growth	Type	Temperature (°C)
8066	positive	growth	28
23090	positive	growth	5.0-30.0
23090	positive	growth	30.0
23090	positive	optimum	28.0-30.0

Culture pH

@ref	Ability	Type	PH	PH range
23090	positive	optimum	6.0-7.0
23090	positive	growth	5.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

23090

Oxygen toleranceaerobe

Spore formation

23090

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
23090	NaCl	positive	growth	0.0-1.0 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23090	16808 ChEBI	2-dehydro-D-gluconate	-	growth
23090	16193 ChEBI	3-hydroxybenzoate	-	growth
23090	37054 ChEBI	3-hydroxybutyrate	+	growth
23090	17879 ChEBI	4-hydroxybenzoate	-	growth
23090	18101 ChEBI	4-hydroxyphenylacetic acid	-	growth
23090	17426 ChEBI	5-dehydro-D-gluconate	-	growth
23090	17128 ChEBI	adipate	-	growth
23090	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
23090		casein	-	hydrolysis
23090	17029 ChEBI	chitin	-	hydrolysis
23090	17634 ChEBI	D-glucose	-	growth
23090	16899 ChEBI	D-mannitol	-	growth
23090	16024 ChEBI	D-mannose	-	growth
23090	16988 ChEBI	D-ribose	-	growth
23090	17924 ChEBI	D-sorbitol	-	growth
23090	27689 ChEBI	decanoate	-	growth
23090	16991 ChEBI	dna	-	hydrolysis
23090	4853 ChEBI	esculin	-	hydrolysis
23090	5291 ChEBI	gelatin	-	fermentation
23090	17234 ChEBI	glucose	-	fermentation
23090	28087 ChEBI	glycogen	-	growth
23090	17368 ChEBI	hypoxanthine	+	hydrolysis
23090	17240 ChEBI	itaconate	+	growth
23090	16977 ChEBI	L-alanine	+	growth
23090	30849 ChEBI	L-arabinose	-	growth
23090	18287 ChEBI	L-fucose	-	growth
23090	15971 ChEBI	L-histidine	+	growth
23090		L-proline-4-nitroanilide	+	growth
23090	62345 ChEBI	L-rhamnose	-	growth
23090	17115 ChEBI	L-serine	-	growth
23090	24996 ChEBI	lactate	+	growth
23090	25115 ChEBI	malate	+	growth
23090	15792 ChEBI	malonate	-	growth
23090	17306 ChEBI	maltose	-	growth
23090	28053 ChEBI	melibiose	-	growth
23090	17268 ChEBI	myo-inositol	-	growth
23090	506227 ChEBI	N-acetylglucosamine	-	growth
23090	17632 ChEBI	nitrate	-	reduction
23090	17309 ChEBI	pectin	-	hydrolysis
23090	32032 ChEBI	potassium gluconate	+	growth
23090	17272 ChEBI	propionate	+	growth
23090	17814 ChEBI	salicin	-	growth
23090	32954 ChEBI	sodium acetate	-	growth
23090	53258 ChEBI	sodium citrate	+	growth
23090	28017 ChEBI	starch	-	hydrolysis
23090	9300 ChEBI	suberic acid	+	growth
23090	17992 ChEBI	sucrose	-	growth
23090	53426 ChEBI	tween 80	-	hydrolysis
23090	18186 ChEBI	tyrosine	+	hydrolysis
23090	31011 ChEBI	valerate	-	growth
23090	15318 ChEBI	xanthine	+	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
23090	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
23090	acid phosphatase	+	3.1.3.2
23090	alkaline phosphatase	+	3.1.3.1
23090	alpha-chymotrypsin	-	3.4.21.1
23090	alpha-fucosidase	-	3.2.1.51
23090	alpha-galactosidase	-	3.2.1.22
23090	alpha-glucosidase	-	3.2.1.20
23090	alpha-mannosidase	-	3.2.1.24
23090	arginine dihydrolase	-	3.5.3.6
23090	beta-galactosidase	+	3.2.1.23
23090	beta-glucosidase	-	3.2.1.21
23090	beta-glucuronidase	-	3.2.1.31
23090	cystine arylamidase	-	3.4.11.3
23090	esterase (C 4)	+
23090	esterase lipase (C 8)	+
23090	leucine arylamidase	+	3.4.11.1
23090	lipase (C 14)	-
23090	N-acetyl-beta-glucosaminidase	-	3.2.1.52
23090	naphthol-AS-BI-phosphohydrolase	+
23090	trypsin	-	3.4.21.4
23090	urease	-	3.5.1.5
23090	valine arylamidase	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture duration	Enrichment culture temperature
8066	soil	Jeju Island, Halla Mountain	Republic of Korea	KOR	Asia
23090						R2A agar plates	5 days	28.0

Taxonmaps

69479

Global distribution of 16S sequence EU030285 (>99% sequence identity) for Polaromonas from Microbeatlas

Aquatic Samples	917
Soil Samples	743
Animal Samples	220
Plant Samples	362
Total Samples	2242

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8066	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4265686v1 assembly for Polaromonas jejuensis KACC 12508	contig	GCA_042656865	457502	57.55

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8066	Polaromonas jejuensis strain JS12-13 16S ribosomal RNA gene, partial sequence	EU030285	1415		1321608

GC content

@ref	GC-content (mol%)	Method
8066	63.7
23090	63.7	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Polaromonas jejuensis sp. nov., isolated from soil in Korea.	Weon HY, Yoo SH, Hong SB, Kwon SW, Stackebrandt E, Go SJ, Koo BS	Int J Syst Evol Microbiol	10.1099/ijs.0.65529-0	2008

References

#8066	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19351
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23090	Hang-Yeon Weon,Seung-Hee Yoo,Seung-Beom Hong,Soon-Wo Kwon,Erko Stackebrandt,Seung-Joo Go,Bon-Sung Koo: Polaromonas jejuensis sp. nov., isolated from soil in Korea. IJSEM 58: 1525 - 1528 2008 ( DOI 10.1099/ijs.0.65529-0 , PubMed 18599688 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Polaromonas jejuensis (DSM 19351, KACC 12508, JS12-13)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042656865

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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