Name: Hydrogenophaga atypica CCUG 53902
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2971

Type strain:

Species: Hydrogenophaga atypica

Culture col. no.: CCUG 53902, CIP 108118, DSM 15342, BSB 31-8

Strain history: CIP <- 2003, DSMZ <- P. Kämpfer, Giessen Univ., Giessen, Germany <- R. Schulze, Germany

NCBI tax ID(s): 249409 (species)

SI-ID 135114

CIP 108118, DSM 15342, CCUG 53902

Section

Hydrogenophaga atypica CCUG 53902 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from activated sludge.

Gram-negative
motile
rod-shaped
mesophilic
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Hydrogenophaga*
	Species	**Hydrogenophaga atypica**
	Full Scientific Name (LPSN)	Hydrogenophaga atypica Kämpfer et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #116546]	Gram stain	negative

[Ref.: #116546]	Cell shape	rod-shaped

[Ref.: #116546]	Motility	yes

[Ref.: #116546]	Pigment production	no
[Ref.: #116546]	Pigment name	Pyocyanin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5857]

Culture medium

HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428)

[Ref.: #5857]

Culture medium growth

[Ref.: #5857]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5857]

Culture medium composition

expand / minimize

[Ref.: #5857]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #5857]

Culture medium growth

[Ref.: #5857]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5857]

Culture medium composition

expand / minimize

[Ref.: #33201]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #33201]

Culture medium growth

[Ref.: #33201]

Culture medium composition

expand / minimize

[Ref.: #116546]

Culture medium

CIP Medium 328

[Ref.: #116546]

Culture medium growth

[Ref.: #116546]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #116546]

Culture medium

CIP Medium 72

[Ref.: #116546]

Culture medium growth

[Ref.: #116546]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5857]		growth	28 °C
[Ref.: #33201]		growth	30 °C
[Ref.: #116546]		growth	25-37 °C
[Ref.: #116546]	no	growth	5 °C
[Ref.: #116546]	no	growth	10 °C
[Ref.: #116546]	no	growth	41 °C

[Ref.: #5857]	Temperature range	mesophilic
[Ref.: #33201]	Temperature range	mesophilic
[Ref.: #116546]	Temperature range	mesophilic
[Ref.: #116546]	Temperature range	psychrophilic
[Ref.: #116546]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #116546]

Oxygen tolerance

obligate aerobe

	Salt	Tested relation		Salt conc.
[Ref.: #116546]	NaCl		growth	0	%
[Ref.: #116546]	NaCl	no	growth	2	%
[Ref.: #116546]	NaCl	no	growth	4	%
[Ref.: #116546]	NaCl	no	growth	6	%
[Ref.: #116546]	NaCl	no	growth	8	%
[Ref.: #116546]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #116546]	citrate ChEBI	-	carbon source
[Ref.: #116546]	esculin ChEBI	-	hydrolysis
[Ref.: #116546]	nitrate ChEBI	+	reduction
[Ref.: #116546]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #116546]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #116546]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #116546]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #116546]	amylase	-
[Ref.: #116546]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116546]	caseinase	-	3.4.21.50
[Ref.: #116546]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #116546]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #116546]	gelatinase	-
[Ref.: #116546]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #116546]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #116546]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116546]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116546]	oxidase	+
[Ref.: #116546]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #116546]	tryptophan deaminase	-
[Ref.: #116546]	tween esterase	-
[Ref.: #116546]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #116546]	2584	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	+	-	-	-	-	+	-	-	-	-	+	-	+	+	-	-	-	-	-	+	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116546]	10898	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5857]	Sample type/isolated from	activated sludge
[Ref.: #5857]	Geographic location (country and/or sea, region)	Munich
[Ref.: #5857]	Country	Germany
[Ref.: #5857]	Country ISO 3 Code	DEU
[Ref.: #5857]	Continent	Europe

[Ref.: #60070]	Sample type/isolated from	Activated sludge
[Ref.: #60070]	Sampling date	1995
[Ref.: #60070]	Geographic location (country and/or sea, region)	München
[Ref.: #60070]	Country	Germany
[Ref.: #60070]	Country ISO 3 Code	DEU
[Ref.: #60070]	Continent	Europe

[Ref.: #116546]	Sample type/isolated from	Environment, Activated sludge
[Ref.: #116546]	Geographic location (country and/or sea, region)	München
[Ref.: #116546]	Country	Germany
[Ref.: #116546]	Country ISO 3 Code	DEU
[Ref.: #116546]	Continent	Europe
[Ref.: #116546]	Isolation date	1995
* marker position based on {}

Isolation sources categories

#Engineered

#Waste

#Activated sludge

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ585992 (>99% sequence identity) for Hydrogenophaga from Microbeatlas

Aquatic Samples	41
Soil Samples	2
Animal Samples	1
Plant Samples	2
Total Samples	46

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5857]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116546]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5857]	Hydrogenophaga atypica partial 16S rRNA gene, type strain BSB 41.8T	AJ585992	1527	ENA	249409 tax ID

Availability in culture collections External links

[Ref.: #5857]

Culture collection no.

CCUG 53902, CIP 108118, DSM 15342, BSB 31-8

[Ref.: #72493]

SI-ID 135114

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hydrogenophaga borbori sp. nov., isolated from activated sludge.	Choi GM, Lee SY, Kim SY, Wee JH, Im WT	Int J Syst Evol Microbiol	10.1099/ijsem.0.003787	2020	*
Phylogeny	Hydrogenophaga soli sp. nov., isolated from rice field soil.	Yang D, Cha S, Choi J, Seo T	Int J Syst Evol Microbiol	10.1099/ijsem.0.002277	2017	*
Phylogeny	Hydrogenophaga defluvii sp. nov. and Hydrogenophaga atypica sp. nov., isolated from activated sludge.	Kampfer P, Schulze R, Jackel U, Malik KA, Amann R, Spring S	Int J Syst Evol Microbiol	10.1099/ijs.0.03041-0	2005	*

References

#5857

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15342

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#33201 ; Curators of the CIP;
#60070 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53902

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#72493

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID135114.1 )

#116546 Collection of Institut Pasteur ; Curators of the CIP; CIP 108118
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Hydrogenophaga atypica in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF