Hydrogenophaga taeniospiralis (DSM 2082, ATCC 49743, CCUG 15921)

Name: Hydrogenophaga taeniospiralis (DSM 2082, ATCC 49743, CCUG 15921)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2968

Type strain

Strain Designation 2K1

Culture col. no. DSM 2082 ATCC 49743 CCUG 15921 LMG 7170 2K1 6 more

NCBI tax ID(s) 1281780 65656

Special Collections DSMZ CCUG JCM KCTC CIP Literature strains

History <- IMG <- L. Lalucat, 2K1 IAM 14929 <-- DSM 2082 <-- IMG <-- L. Lalucat 2K1. CIP <- 2000, CCM <- LMG <- DSMZ <- IMG <- L. Lalucat: strain 2K1

Links

Hydrogenophaga taeniospiralis 2K1 is an aerobe, chemoorganotroph, Gram-negative bacterium that has a nondiffusible yellow pigmentation and was isolated from soil.

Gram-negative motile rod-shaped pigmented aerobe chemoorganotroph genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 14284

LMG 7170,ATCC 49743,CCUG 15921,CIP 106727,CCM 4458,IAM 14929,KCTC 12153,NBRC 102512,JCM 21411,NCPPB 4119,DSM 2082

@ref 20215

Last LPSN update 2026-02-09 11:18:24

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Comamonadaceae

Genus Hydrogenophaga

Species Hydrogenophaga taeniospiralis

Full scientific name Hydrogenophaga taeniospiralis (Lalucat et al. 1982) Willems et al. 1989

Synonyms (1)

Pseudomonas taeniospiralis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
23086	negative	0.6-5.5 µm	0.3-0.6 µm	rod-shaped	monotrichous
123412	negative			rod-shaped
125438	negative					98.5
125439	negative					97.6

Colony morphology

23086

Type of hemolysisgamma

Pigmentation

@ref	Production	Color	Name
23086		nondiffusible yellow
123412			Pyocyanin

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
716	MINERAL MEDIUM FOR CHEMOLITHOTROPHIC GROWTH (H-3) (DSMZ Medium 81)	Medium recipe at MediaDive	Name: MINERAL MEDIUM FOR CHEMOLITHOTROPHIC GROWTH (H-3) (DSMZ Medium 81) Composition: Agar 20.1005 g/l Na2HPO4 x 2 H2O 2.91457 g/l KH2PO4 2.31156 g/l NH4Cl 1.00503 g/l MgSO4 x 7 H2O 0.502512 g/l Ferric ammonium citrate 0.0502513 g/l CaCl2 x 2 H2O 0.0100503 g/l NaVO3 x H2O 0.00502512 g/l Calcium pantothenate 0.00251256 g/l Pyridoxine hydrochloride 0.00251256 g/l Nicotinic acid 0.00251256 g/l Thiamine-HCl x 2 H2O 0.00251256 g/l H3BO3 0.00150754 g/l CoCl2 x 6 H2O 0.00100503 g/l Riboflavin 0.000502513 g/l ZnSO4 x 7 H2O 0.000502513 g/l MnCl2 x 4 H2O 0.000150754 g/l Na2MoO4 x 2 H2O 0.000150754 g/l NiCl2 x 6 H2O 0.000100503 g/l CuCl2 x 2 H2O 5.02513e-05 g/l Vitamin B12 5.02513e-05 g/l Folic acid 1.00503e-05 g/l Biotin 5.02513e-06 g/l Distilled water
716	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
39561	MEDIUM 328- for nutrient agar		Distilled water make up to (1000.000 ml);Agar (15.000 g);Peptone (5.000g);Beef extract (3.000 g)
123412	CIP Medium 328	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
716	positive	growth	30
23086	negative	growth	37.0
23086	positive	growth	30.0
23086	negative	growth	42.0
39561	positive	growth	30
67770	positive	growth	30
123412	positive	growth	25-37
123412	negative	growth	5
123412	negative	growth	10
123412	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
23086	aerobe
125439	obligate aerobe	90.9

Nutrition type

@ref	Type
23086	chemoorganotroph
23086	chemolithoautotroph

Spore formation

@ref	Spore formation	Confidence
125439		98.2

Halophily

@ref	Salt	Growth	Tested relation	Concentration
23086	NaCl		growth	0.5 %
23086	NaCl		growth	1.5 %
23086	NaCl		growth	3.0 %
23086	NaCl		growth	4.5 %
23086	NaCl		growth	6.5 %
123412	NaCl	positive	growth	0 %
123412	NaCl		growth	2 %
123412	NaCl		growth	4 %
123412	NaCl		growth	6 %
123412	NaCl		growth	8 %
123412	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23086	32382 ChEBI	(R)-mandelate	-	carbon source
23086	32800 ChEBI	(S)-mandelic acid	+	carbon source
23086	16567 ChEBI	2-aminobenzoate	-	carbon source
23086	28340 ChEBI	2-aminobutyrate	-	carbon source
23086	19475 ChEBI	2-aminopentanoic acid	-	carbon source
23086	16808 ChEBI	2-dehydro-D-gluconate	-	carbon source
23086	30916 ChEBI	2-oxoglutarate	+	carbon source
23086	30761 ChEBI	3-aminobenzoate	-	carbon source
23086	87997 ChEBI	3-aminobutyrate	-	growth
23086	87997 ChEBI	3-aminobutyrate	+	carbon source
23086	16193 ChEBI	3-hydroxybenzoate	-	carbon source
23086	37054 ChEBI	3-hydroxybutyrate	+	carbon source
23086	17836 ChEBI	4-aminobenzoate	-	carbon source
23086	17879 ChEBI	4-hydroxybenzoate	-	carbon source
23086	39150 ChEBI	4-oxopentanoate	+	carbon source
23086	15887 ChEBI	5-aminovaleric acid	+	carbon source
23086	15887 ChEBI	5-aminovaleric acid	+	growth
23086	17426 ChEBI	5-dehydro-D-gluconate	-	carbon source
23086	27856 ChEBI	acetamide	-	carbon source
23086	27856 ChEBI	acetamide	-	hydrolysis
23086	30089 ChEBI	acetate	-	carbon source
23086	22210 ChEBI	aconitate	-	carbon source
23086	17128 ChEBI	adipate	-	carbon source
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
23086	27613 ChEBI	amygdalin	-	carbon source
23086	18305 ChEBI	arbutin	-	carbon source
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
23086	78208 ChEBI	azelaate	+	carbon source
23086	78208 ChEBI	azelaate	+	growth
23086	16150 ChEBI	benzoate	-	carbon source
23086	40538 ChEBI	benzylamine	-	carbon source
23086	16958 ChEBI	beta-alanine	-	carbon source
23086	17750 ChEBI	betaine	-	carbon source
23086	43799 ChEBI	butan-1-amine	+	carbon source
23086	43799 ChEBI	butan-1-amine	+	growth
23086	17968 ChEBI	butyrate	+	carbon source
23086	17057 ChEBI	cellobiose	+	carbon source
23086	17057 ChEBI	cellobiose	+	growth
23086	3565 ChEBI	cetrimide	-	growth
23086	30719 ChEBI	citraconate	-	carbon source
23086	16947 ChEBI	citrate	-	carbon source
123412	16947 ChEBI	citrate	-	carbon source
23086	16919 ChEBI	creatine	-	carbon source
23086	15570 ChEBI	D-alanine	-	carbon source
23086	17108 ChEBI	D-arabinose	-	carbon source
23086	18333 ChEBI	D-arabitol	+	carbon source
23086	18333 ChEBI	D-arabitol	+	growth
23086	15824 ChEBI	D-fructose	+	carbon source
23086	15824 ChEBI	D-fructose	+	growth
23086	28847 ChEBI	D-fucose	-	carbon source
23086	12936 ChEBI	D-galactose	+	carbon source
23086	12936 ChEBI	D-galactose	+	growth
23086	17634 ChEBI	D-glucose	+	carbon source
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
23086	62318 ChEBI	D-lyxose	-	carbon source
23086	15588 ChEBI	D-malate	+	carbon source
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
23086	16024 ChEBI	D-mannose	+	carbon source
23086	16024 ChEBI	D-mannose	+	growth
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
23086	16988 ChEBI	D-ribose	-	carbon source
23086	16443 ChEBI	D-tagatose	-	carbon source
23086	30927 ChEBI	D-tartrate	-	carbon source
23086	16296 ChEBI	D-tryptophan	-	carbon source
23086	65327 ChEBI	D-xylose	+	carbon source
23086	65327 ChEBI	D-xylose	+	growth
23086	27689 ChEBI	decanoate	-	carbon source
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
23086	17113 ChEBI	erythritol	-	carbon source
23086	4853 ChEBI	esculin	-	carbon source
23086	4853 ChEBI	esculin	+	hydrolysis
123412	4853 ChEBI	esculin	+	hydrolysis
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
23086	16000 ChEBI	ethanolamine	+	carbon source
23086	16000 ChEBI	ethanolamine	+	growth
23086	15862 ChEBI	ethylamine	-	carbon source
23086	29806 ChEBI	fumarate	+	carbon source
23086	16813 ChEBI	galactitol	-	carbon source
23086	16865 ChEBI	gamma-aminobutyric acid	+	carbon source
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
23086	28066 ChEBI	gentiobiose	-	carbon source
23086	24265 ChEBI	gluconate	+	carbon source
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
23086	5417 ChEBI	glucosamine	-	carbon source
23086	17859 ChEBI	glutaric acid	+	carbon source
23086	33871 ChEBI	glycerate	+	carbon source
23086	17754 ChEBI	glycerol	+	carbon source
23086	15428 ChEBI	glycine	-	carbon source
23086	28087 ChEBI	glycogen	-	carbon source
23086	29805 ChEBI	glycolate	-	carbon source
23086	29805 ChEBI	glycolate	-	growth
23086	32362 ChEBI	heptanoate	-	carbon source
23086	18295 ChEBI	histamine	-	carbon source
23086	15443 ChEBI	inulin	-	carbon source
23086	48944 ChEBI	isobutyrate	-	carbon source
23086	30803 ChEBI	isophthalate	-	carbon source
23086	48942 ChEBI	isovalerate	-	carbon source
23086	17240 ChEBI	itaconate	-	carbon source
23086	28683 ChEBI	kynurenine	-	carbon source
23086	16977 ChEBI	L-alanine	-	carbon source
23086	30849 ChEBI	L-arabinose	+	carbon source
23086	30849 ChEBI	L-arabinose	+	growth
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
23086	18403 ChEBI	L-arabitol	-	carbon source
23086	16467 ChEBI	L-arginine	+	carbon source
23086	29991 ChEBI	L-aspartate	+	carbon source
23086	16349 ChEBI	L-citrulline	-	carbon source
23086	17561 ChEBI	L-cysteine	-	carbon source
23086	18287 ChEBI	L-fucose	-	growth
23086	18287 ChEBI	L-fucose	+	carbon source
23086	29985 ChEBI	L-glutamate	+	carbon source
23086	15971 ChEBI	L-histidine	-	carbon source
23086	15971 ChEBI	L-histidine	-	growth
23086	17191 ChEBI	L-isoleucine	+	carbon source
23086	15603 ChEBI	L-leucine	+	carbon source
23086	18019 ChEBI	L-lysine	-	carbon source
23086	15589 ChEBI	L-malate	+	carbon source
23086	16643 ChEBI	L-methionine	-	carbon source
23086	18347 ChEBI	L-norleucine	-	carbon source
23086	15729 ChEBI	L-ornithine	+	carbon source
23086	17295 ChEBI	L-phenylalanine	+	carbon source
23086	17203 ChEBI	L-proline	+	carbon source
23086	62345 ChEBI	L-rhamnose	+	carbon source
23086	17115 ChEBI	L-serine	-	carbon source
23086	17266 ChEBI	L-sorbose	-	carbon source
23086	30924 ChEBI	L-tartrate	-	carbon source
23086	16857 ChEBI	L-threonine	-	carbon source
23086	16828 ChEBI	L-tryptophan	+	carbon source
23086	17895 ChEBI	L-tyrosine	+	carbon source
23086	16414 ChEBI	L-valine	-	carbon source
23086	65328 ChEBI	L-xylose	-	carbon source
23086	24996 ChEBI	lactate	+	carbon source
23086	17716 ChEBI	lactose	-	carbon source
23086	17716 ChEBI	lactose	-	growth
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
23086	18300 ChEBI	maleic acid	-	carbon source
23086	15792 ChEBI	malonate	-	carbon source
23086	17306 ChEBI	maltose	-	carbon source
23086	17306 ChEBI	maltose	-	growth
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
23086	29864 ChEBI	mannitol	+	carbon source
23086	29864 ChEBI	mannitol	+	growth
23086	6731 ChEBI	melezitose	-	carbon source
23086	28053 ChEBI	melibiose	-	carbon source
23086	36986 ChEBI	mesaconate	-	carbon source
23086	30928 ChEBI	meso-tartrate	-	carbon source
23086	320061 ChEBI	methyl alpha-D-glucopyranoside	-	carbon source
23086	43943 ChEBI	methyl alpha-D-mannoside	-	carbon source
23086	74863 ChEBI	methyl beta-D-xylopyranoside	-	carbon source
23086	17268 ChEBI	myo-inositol	+	carbon source
23086	506227 ChEBI	N-acetylglucosamine	-	carbon source
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
23086	17632 ChEBI	nitrate	+	reduction
123412	17632 ChEBI	nitrate	+	reduction
123412	17632 ChEBI	nitrate	+	respiration
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
23086	16301 ChEBI	nitrite	+	reduction
123412	16301 ChEBI	nitrite	+	reduction
23086	32361 ChEBI	nonanoate	-	carbon source
23086	36405 ChEBI	norleucine	-	carbon source
23086	25646 ChEBI	octanoate	-	carbon source
23086	30623 ChEBI	oxalate	-	carbon source
23086	74848 ChEBI	pentan-1-amine	-	carbon source
23086	18401 ChEBI	phenylacetate	-	carbon source
23086	17563 ChEBI	phthalate	-	carbon source
23086	17774 ChEBI	pimelate	-	carbon source
23086	17272 ChEBI	propionate	-	carbon source
23086	17148 ChEBI	putrescine	+	carbon source
23086	15361 ChEBI	pyruvate	+	carbon source
23086	16634 ChEBI	raffinose	-	carbon source
23086	15963 ChEBI	ribitol	-	carbon source
23086	17814 ChEBI	salicin	-	carbon source
23086	30762 ChEBI	salicylate	-	carbon source
23086	15611 ChEBI	sarcosine	-	carbon source
23086	41865 ChEBI	sebacic acid	+	carbon source
23086	30911 ChEBI	sorbitol	+	carbon source
23086	30911 ChEBI	sorbitol	+	growth
23086	15746 ChEBI	spermine	+	carbon source
23086	28017 ChEBI	starch	-	carbon source
23086	9300 ChEBI	suberic acid	+	carbon source
23086	30031 ChEBI	succinate	+	carbon source
23086	17992 ChEBI	sucrose	+	carbon source
23086	17992 ChEBI	sucrose	+	growth
23086	30043 ChEBI	terephthalate	-	carbon source
23086	27082 ChEBI	trehalose	-	carbon source
23086	18123 ChEBI	trigonelline	-	carbon source
23086	16765 ChEBI	tryptamine	-	carbon source
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
23086	32528 ChEBI	turanose	-	carbon source
23086	32528 ChEBI	turanose	-	growth
23086	53426 ChEBI	tween 80	+	hydrolysis
23086	16199 ChEBI	urea	-	carbon source
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
23086	31011 ChEBI	valerate	-	carbon source
23086	17151 ChEBI	xylitol	-	carbon source

Antibiotic resistance

@ref	ChEBI	Metabolite	Is resistant	Resistance conc.	Is sensitive
123412		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
23086	17334	penicillin		10 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
123412	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
23086	acid phosphatase	-	3.1.3.2
123412	alcohol dehydrogenase	-	1.1.1.1
23086	alpha-chymotrypsin	-	3.4.21.1
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
23086	alpha-fucosidase	-	3.2.1.51
68382	alpha-fucosidase	-	3.2.1.51	from API zym
23086	alpha-galactosidase	-	3.2.1.22
23086	alpha-glucosidase	-	3.2.1.20
23086	alpha-mannosidase	-	3.2.1.24
68382	alpha-mannosidase	-	3.2.1.24	from API zym
123412	amylase	-
23086	arginine dihydrolase	-	3.5.3.6
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
23086	beta-galactosidase	-	3.2.1.23
123412	beta-galactosidase	+	3.2.1.23
23086	beta-glucosidase	+	3.2.1.21
68382	beta-glucosidase	+	3.2.1.21	from API zym
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
23086	beta-glucuronidase	-	3.2.1.31
68382	beta-glucuronidase	-	3.2.1.31	from API zym
123412	caseinase	-	3.4.21.50
23086	catalase	-	1.11.1.6
123412	catalase	-	1.11.1.6
23086	cystine arylamidase	-	3.4.11.3
68382	cystine arylamidase	-	3.4.11.3	from API zym
23086	cytochrome oxidase	+	1.9.3.1
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
123412	DNase	-
23086	esterase (C 4)	+
68382	esterase (C 4)	+		from API zym
23086	esterase lipase (C 8)	+
68382	esterase lipase (C 8)	+		from API zym
123412	gelatinase	+/-
68369	gelatinase	-		from API 20NE
123412	lecithinase	-
23086	leucine arylamidase	+	3.4.11.1
68382	leucine arylamidase	+	3.4.11.1	from API zym
123412	lipase	-
23086	lipase (C 14)	-
68382	lipase (C 14)	-		from API zym
23086	lysine decarboxylase	-	4.1.1.18
123412	lysine decarboxylase	-	4.1.1.18
23086	N-acetyl-beta-glucosaminidase	-	3.2.1.52
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
23086	naphthol-AS-BI-phosphohydrolase	-
23086	ornithine decarboxylase	-	4.1.1.17
123412	ornithine decarboxylase	-	4.1.1.17
123412	oxidase	+
123412	protease	-
23086	trypsin	-	3.4.21.4
68382	trypsin	-	3.4.21.4	from API zym
123412	tryptophan deaminase	-
123412	tween esterase	-
23086	urease	+	3.5.1.5
123412	urease	+	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
23086	valine arylamidase	-
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
46387	-	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-
123412	-	+	+	+	-	+	-	-	-	-	+	+	+	+	-	+	+	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
46387	+	-	-	-	-	+	-	+	+	+	-	+	-	-	+	-	-	+	-	-	+

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
123412	not determinedn.d.	+	+	+	-	+	-	-	+	-	-	+	-	-	-	-	+	-	-	-	-	+	+	-	+	+	-	+	-	-	-	-	+	+	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	+	+	-	+	+	-	+	-	+	-	+	-	-	-	-	-	-	+	+	+	-	+	-	-	-	+	+	+	+	+	+	-	-	-	+	+	+	+	+	+	+	-	-	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
716	soil	near Barcelona	Spain	ESP	Europe
46387	Soil	near Barcelona	Spain	ESP	Europe
67770	Soil		Spain	ESP	Europe
123412	Environment, Soil		Spain	ESP	Europe

Taxonmaps

69479

Global distribution of 16S sequence AF078768 (>99% sequence identity) for Hydrogenophaga from Microbeatlas

Aquatic Samples	515
Soil Samples	12
Animal Samples	29
Plant Samples	16
Total Samples	572

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
716	1	Risk group (German classification) According to TRBA 466
123412	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM159230v1 assembly for Hydrogenophaga taeniospiralis CCUG 15921 NBRC 102512	contig	GCA_001592305	1349793.3	2731957688	1281780	68.43
124043	HydTae1.0 assembly for Hydrogenophaga taeniospiralis CCUG 15921	contig	GCA_029748465	1281780.7		1281780	65.73

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Hydrogenophaga taeniospiralis 16S ribosomal RNA gene, partial sequence	AF078768	1514		1281780
20218	Hydrogenophaga taeniospiralis gene for 16S rRNA, partial sequence, strain: NBRC 102512	AB681846	1458		1281780

GC content

@ref	GC-content (mol%)	Method
23086	65.0	thermal denaturation, midpoint method (Tm)
716	60.2

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Hydrogenophaga taeniospiralis CCUG 15921 NBRC 102512
NCBI: GCA_001592305

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.20	no
125439	motility	BacteriaNetⓘ	yes	89.20	no
125439	gram_stain	BacteriaNetⓘ	negative	97.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	90.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Hydrogenophaga taeniospiralis NBRC 102512
PATRIC: 1349793.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	no
125438	anaerobic	anaerobicⓘ	no	92.94	no
125438	spore-forming	spore-formingⓘ	no	88.88	no
125438	aerobic	aerobicⓘ	yes	81.79	yes
125438	thermophilic	thermophileⓘ	no	98.35	yes
125438	flagellated	motile2+ⓘ	yes	86.47	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Activity and electron donor preference of two denitrifying bacterial strains identified by Raman gas spectroscopy.	Blohm A, Kumar S, Knebl A, Herrmann M, Kusel K, Popp J, Frosch T.	Anal Bioanal Chem	10.1007/s00216-021-03541-y	2022
Phylogeny	A Cross-section Metagenomics and 16S Ribosomal DNA Based Evaluation of the Bacterial and Archaeal Communities Resident in the Forumad Chromite Mine, Northeastern of Iran.	Mousavi Maleki MS, Yakhchali B, Karkhaneh AA, Rezvani M, Ahmadpour F.	Iran J Biotechnol	10.30498/ijb.2022.240607.2818	2022
	Differential Impacts of Willow and Mineral Fertilizer on Bacterial Communities and Biodegradation in Diesel Fuel Oil-Contaminated Soil.	Leewis MC, Uhlik O, Fraraccio S, McFarlin K, Kottara A, Glover C, Macek T, Leigh MB.	Front Microbiol	10.3389/fmicb.2016.00837	2016
	Evaluating the aerobic xylene-degrading potential of the intrinsic microbial community of a legacy BTEX-contaminated aquifer by enrichment culturing coupled with multi-omics analysis: uncovering the role of Hydrogenophaga strains in xylene degradation.	Banerjee S, Bedics A, Harkai P, Kriszt B, Alpula N, Tancsics A.	Environ Sci Pollut Res Int	10.1007/s11356-021-18300-w	2022
Metabolism	Microbiological oxidation of antimony(III) with oxygen or nitrate by bacteria isolated from contaminated mine sediments.	Terry LR, Kulp TR, Wiatrowski H, Miller LG, Oremland RS.	Appl Environ Microbiol	10.1128/aem.01970-15	2015
Phylogeny	Hydrogenophaga aromaticivorans sp. nov., isolated from a para-xylene-degrading enrichment culture, capable of degrading benzene, meta- and para-xylene.	Banerjee S, Tancsics A, Toth E, Revesz F, Boka K, Kriszt B	Int J Syst Evol Microbiol	10.1099/ijsem.0.004743	2021
Phylogeny	Hydrogenophaga borbori sp. nov., isolated from activated sludge.	Choi GM, Lee SY, Kim SY, Wee JH, Im WT	Int J Syst Evol Microbiol	10.1099/ijsem.0.003787	2020
Phylogeny	Hydrogenophaga temperata sp. nov., a betaproteobacterium isolated from compost in Korea.	Kim YJ, Kim MK, Weon HY, Kim HB, Yang DC	J Gen Appl Microbiol	10.2323/jgam.56.419	2010

References

#716	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2082
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#23086	A. Willems,J. Busse,M. Goor,B. Pot,E. Falsen,E. Jantzen,B. Hoste,M. Gillis,K. Kersters,G. Auling,J. De Ley: Hydrogenophaga, a New Genus of Hydrogen-Oxidizing Bacteria That Includes Hydrogenophaga flava comb. nov. (Formerly Pseudomonas flava), Hydrogenophaga palleronii (Formerly Pseudomonas palleronii), Hydrogenophaga pseudoflava (Formerly Pseudomonas pseudoflava and 'Pseudomonas carboxydoflava'), and Hydrogenophaga taeniospiralis (Formerly Pseudomonas taeniospiralis). IJSEM 39: 319 - 333 1989 ( DOI 10.1099/00207713-39-3-319 )
#39561	; Curators of the CIP;
#46387	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 15921
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123412	Collection of Institut Pasteur ; Curators of the CIP; CIP 106727
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Hydrogenophaga taeniospiralis (DSM 2082, ATCC 49743, CCUG 15921)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Nutrition type

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001592305

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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