Comamonas zonglianii (DSM 22523, CCTCC AB 209170, BF-3)

Name: Comamonas zonglianii (DSM 22523, CCTCC AB 209170, BF-3)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2938

Type strain

Strain Designation BF-3

Culture col. no. DSM 22523 CCTCC AB 209170 BF-3 CIP 110332

NCBI tax ID(s) 663949

Special Collections DSMZ Literature strains CIP

History <- X.-Y. Yu, Nanjing Agric. Univ., China; BF-3 CIP <- 2011, <- X. Yu, Nanjing Agric. Univ., China: strain BF-3

Links

Comamonas zonglianii BF-3 is an aerobe, mesophilic, Gram-negative prokaryote that forms circular colonies and was isolated from phenol-contaminated soil.

Gram-negative rod-shaped colony-forming aerobe mesophilic 16S sequence

Name and taxonomic classification

SI-ID 376085

DSM 22523,CIP 110332

@ref 20215

Last LPSN update 2026-02-09 11:18:23

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Comamonadaceae

Genus Comamonas

Species Comamonas zonglianii

Full scientific name Comamonas zonglianii Yu et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
23083	negative	0.9-1.5 µm	0.6-0.8 µm	rod-shaped
124033	negative			rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
23083	2.0 mm	pale yellow	circular	2 days	LB agar

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16378	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
23083	LB (Luria-Bertani) MEDIUM
37630	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
124033	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16378	positive	growth	28	mesophilic
23083	positive	growth	15.0-43.0
23083	positive	optimum	25.0-37.0	mesophilic
37630	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
23083	positive	optimum	7.0-8.0
23083	positive	growth	6.0-10.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
23083	aerobe
124033	obligate aerobe

Spore formation

23083

Spore formationno

Halophily

@ref	Salt	Tested relation	Concentration
23083	NaCl	optimum	0.0-1.0 %
23083	NaCl	optimum	0.0-2.5 %
23083	NaCl	growth	3.0 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23083	17521 ChEBI	(-)-quinic acid	+	oxidation
23083	64552 ChEBI	2-hydroxybutyrate	+	oxidation
23083	16763 ChEBI	2-oxobutanoate	+	oxidation
23083	37054 ChEBI	3-hydroxybutyrate	+	oxidation
23083	18240 ChEBI	4-hydroxy-L-proline	-	growth
23083	16724 ChEBI	4-hydroxybutyrate	+	growth
23083	16724 ChEBI	4-hydroxybutyrate	+	oxidation
23083	18101 ChEBI	4-hydroxyphenylacetic acid	+	oxidation
23083	30089 ChEBI	acetate	+	oxidation
23083	17128 ChEBI	adipate	+	growth
23083	22599 ChEBI	arabinose	-	growth
23083	73706 ChEBI	bromosuccinate	+	oxidation
23083	16947 ChEBI	citrate	+	growth
23083	16947 ChEBI	citrate	+	oxidation
23083	15895 ChEBI	D-galactonic acid lactone	+	oxidation
23083	8391 ChEBI	D-gluconate	+	oxidation
23083	17784 ChEBI	D-glucosaminic acid	+	oxidation
23083	14314 ChEBI	D-glucose 6-phosphate	+	oxidation
23083	27689 ChEBI	decanoate	+	growth
23083	4853 ChEBI	esculin	-	hydrolysis
23083	16865 ChEBI	gamma-aminobutyric acid	+	oxidation
23083	5291 ChEBI	gelatin	+	hydrolysis
23083	24265 ChEBI	gluconate	+	growth
23083	17234 ChEBI	glucose	-	fermentation
23083	17234 ChEBI	glucose	-	growth
23083	14336 ChEBI	glycerol 1-phosphate	+	oxidation
23083	73804 ChEBI	glycyl L-aspartic acid	-	growth
23083	73804 ChEBI	glycyl L-aspartic acid	+	oxidation
23083	73784 ChEBI	glycyl-l-glutamate	-	growth
23083	17240 ChEBI	itaconate	-	growth
23083	21217 ChEBI	L-alaninamide	+	oxidation
23083	16977 ChEBI	L-alanine	+	oxidation
23083	17196 ChEBI	L-asparagine	+	oxidation
23083	29985 ChEBI	L-glutamate	+	oxidation
23083	15603 ChEBI	L-leucine	+	oxidation
23083	17295 ChEBI	L-phenylalanine	+	growth
23083	17295 ChEBI	L-phenylalanine	+	oxidation
23083	17203 ChEBI	L-proline	+	oxidation
23083	18183 ChEBI	L-pyroglutamic acid	+	oxidation
23083	24996 ChEBI	lactate	+	oxidation
23083	25115 ChEBI	malate	-	growth
23083	17306 ChEBI	maltose	-	growth
23083	29864 ChEBI	mannitol	-	growth
23083	37684 ChEBI	mannose	-	growth
23083	51850 ChEBI	methyl pyruvate	+	oxidation
23083	75146 ChEBI	monomethyl succinate	+	oxidation
23083	506227 ChEBI	N-acetylglucosamine	-	growth
23083	17632 ChEBI	nitrate	-	reduction
124033	17632 ChEBI	nitrate	-	reduction
124033	16301 ChEBI	nitrite	-	reduction
23083	18401 ChEBI	phenylacetate	-	growth
23083	17272 ChEBI	propionate	+	oxidation
23083	41865 ChEBI	sebacic acid	+	oxidation
23083	32954 ChEBI	sodium acetate	+	growth
23083	143136 ChEBI	succinamate	+	oxidation
23083	30031 ChEBI	succinate	+	oxidation
23083	53423 ChEBI	tween 40	+	growth
23083	53423 ChEBI	tween 40	+	oxidation
23083	53426 ChEBI	tween 80	+	oxidation
23083	27248 ChEBI	urocanic acid	+	oxidation

Antibiotic resistance

@ref	ChEBI	Metabolite
23083	28971	ampicillin
23083	17833	gentamicin
23083	18208	penicillin g
23083	28077	rifampicin
23083	17076	streptomycin

Metabolite production

@ref	Chebi-ID	Metabolite	Production
23083	35581 ChEBI	indole
124033	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
23083	acid phosphatase	+	3.1.3.2
68382	acid phosphatase	+	3.1.3.2	from API zym
23083	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
23083	alpha-chymotrypsin	-	3.4.21.1
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
23083	alpha-fucosidase	-	3.2.1.51
68382	alpha-fucosidase	-	3.2.1.51	from API zym
23083	alpha-galactosidase	-	3.2.1.22
68382	alpha-galactosidase	-	3.2.1.22	from API zym
23083	alpha-glucosidase	-	3.2.1.20
68382	alpha-glucosidase	-	3.2.1.20	from API zym
23083	alpha-mannosidase	-	3.2.1.24
68382	alpha-mannosidase	-	3.2.1.24	from API zym
23083	arginine dihydrolase	+	3.5.3.6
23083	beta-galactosidase	-	3.2.1.23
68382	beta-galactosidase	-	3.2.1.23	from API zym
23083	beta-glucosidase	-	3.2.1.21
68382	beta-glucosidase	-	3.2.1.21	from API zym
23083	beta-glucuronidase	-	3.2.1.31
68382	beta-glucuronidase	-	3.2.1.31	from API zym
23083	catalase	+	1.11.1.6
124033	catalase	+	1.11.1.6
23083	cystine arylamidase	-	3.4.11.3
68382	cystine arylamidase	-	3.4.11.3	from API zym
23083	cytochrome oxidase	+	1.9.3.1
23083	esterase (C 4)	+
68382	esterase (C 4)	+		from API zym
23083	esterase lipase (C 8)	+
68382	esterase lipase (C 8)	+		from API zym
23083	leucine arylamidase	+	3.4.11.1
68382	leucine arylamidase	+	3.4.11.1	from API zym
23083	lipase (C 14)	-
68382	lipase (C 14)	-		from API zym
23083	N-acetyl-beta-glucosaminidase	+	3.2.1.52
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
23083	naphthol-AS-BI-phosphohydrolase	+
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
124033	oxidase	+
23083	trypsin	-	3.4.21.4
68382	trypsin	-	3.4.21.4	from API zym
23083	urease	+	3.5.1.5
124033	urease	+	3.5.1.5
23083	valine arylamidase	+
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
124033	-	+	+	+	-	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Contamination	-
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date	Enrichment culture	Enrichment culture composition
16378	phenol-contaminated soil	Jiangsu Province, Nanjing	China	CHN	Asia
23083		chemical factory in Nanjing,Jiangsu Province					LB medium	supplemented with 500 mg phenol l-1
124033	Environment, Soil contaminated by phenol	Nanjing, Jiangsu	China	CHN	Asia	2008

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16378	1	Risk group (German classification) According to TRBA 466
124033	1	Risk group (French classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16378	Comamonas zonglianii strain BF-3 16S ribosomal RNA gene, partial sequence	GQ245981	1453		663949

GC content

@ref	GC-content (mol%)	Method
16378	65.2±1	thermal denaturation, midpoint method (Tm)
23083	64.2-66.2

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Comamonas humi sp. nov., isolated from soil.	Hatayama K	Int J Syst Evol Microbiol	10.1099/ijs.0.067439-0	2014
Phylogeny	Comamonas faecalis sp. nov., isolated from domestic pig feces.	Kim D, Lee SS	Curr Microbiol	10.1007/s00284-014-0561-4	2014
Phylogeny	Comamonas zonglianii sp. nov., isolated from phenol-contaminated soil.	Yu XY, Li YF, Zheng JW, Li Y, Li L, He J, Li SP	Int J Syst Evol Microbiol	10.1099/ijs.0.019612-0	2010

References

#16378	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22523
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23083	Xin-Yan Yu,Yong-Feng Li,Jin-Wei Zheng,Yi Li,Lian Li,Jian He,Shun-Peng Li: Comamonas zonglianii sp. nov., isolated from phenol-contaminated soil. IJSEM 61: 255 - 258 2011 ( DOI 10.1099/ijs.0.019612-0 , PubMed 20207803 )
#37630	; Curators of the CIP;
#68382	Automatically annotated from API zym .
#124033	Collection of Institut Pasteur ; Curators of the CIP; CIP 110332
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Comamonas zonglianii (DSM 22523, CCTCC AB 209170, BF-3)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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